Rmu_sc0004336.1_g000002

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004336.1
OG0000417
Physical Location & Seq
Forward (+)
7904 .. 9100
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004336.1_g000002.1.cds

Sequence Viewer

Length: 1197 bp
atgaagataagtttggaagagttgaccgcaaaagttactgagctctcagatcagaagaatgaaggtggctttgatgaggaacgagcccgcaatttttatgcagaaccatttgatcatatttgttccaaagacttcatcgagatgatgatagttgacggttgcttcctaattcaactgtttcggaagtgtgaaaattcaaaactcagggcctttgatgatccgctgttcaacatgcactgtatgtttcatttcctatgccatgacattttgctcctagagaatcaattaccttggtttgttatccacagtttgtatagcattacccatgaaatataccctgatgaagcctccctctctactctcatccttaaagccttcagcatgtcaccatcactgaagcaaagttgctcatcttataataagcatctccgccaaagcaagtgtcattgtgatgttgattatctgcacatacttgatctggtaagagcttccatagttattccattcaagaccatcgatgcgagagtagctagaaaagaatctatgtccagccaagctgaagagcatcaagtacataaaaggaccattgacaaggcagagagtaaagctgttcaggaagctatctttgacccagatctacatcgtatatgtaccgtaaccgctctctcaaaggcagacgttaaattcaaaagcgtagaaaaggacagcataatggacatccaattcaaagagggtgggtggttcaggaatggaattcttatgattccaaagctaaacgttggaatgtcatcagaaacattattcaggaacctcattgcaattgagcaatgctaccatggttattcaaacgagataacatcttatgccatctttatggataacctcatctcttcaaaggaagatatggaattactttgcaagcaaaaagtaattggtaactcgatgagtgatgaagatggttgtaagtttttcagcaacctttacaaaaacatcccgcacaacaagttctactatgttgagctgtgcaaaaaagtgaatgatcgttacagatcgagatggtttacatggttggctttactcaagagtgaaaaattttctagtccctggagaattttagcttttgggataggtattatcattttgattctcaccgcgtggagtcagacactcagcattcgggttaacatgcgtaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

398

Amino Acids

46.27

Weight (kDa)

6.91

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 662
AccII CGCG 1 cut(s) 1154
AciI CCGC 7 cut(s) 27, 88, 221, 430, 660, 995, 1152
AclI AACGTT 1 cut(s) 777
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 5 cut(s) 193, 683, 753, 1091, 1110
AcuI CTGAAG 3 cut(s) 361, 416, 579
AdeI CACNNNGTG 1 cut(s) 1155
AfaI GTAC 2 cut(s) 573, 652
AgsI TTSAA 8 cut(s) 173, 198, 229, 508, 688, 727, 846, 894
AjnI CCWGG 1 cut(s) 1103
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 9 cut(s) 43, 488, 530, 557, 608, 620, 772, 1021, 1118
AluI AGCT 9 cut(s) 43, 488, 530, 557, 608, 620, 772, 1021, 1118
Alw21I GWGCWC 1 cut(s) 45
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 207
ApoI RAATTY 5 cut(s) 193, 683, 753, 1091, 1110
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
AspS9I GGNCC 2 cut(s) 207, 582
AsuHPI GGTGA 2 cut(s) 378, 1141
AvaII GGWCC 1 cut(s) 582
BanII GRGCYC 2 cut(s) 45, 88
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 5 cut(s) 397, 521, 875, 950, 1050
BciT130I CCWGG 1 cut(s) 1105
BclI TGATCA 1 cut(s) 112
BfaI CTAG 3 cut(s) 275, 531, 1098
BglII AGATCT 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 1105
Bme18I GGWCC 1 cut(s) 582
BmgT120I GGNCC 2 cut(s) 207, 582
BmiI GGNNCC 1 cut(s) 809
BmrFI CCNGG 1 cut(s) 1105
BmsI GCATC 3 cut(s) 433, 508, 574
BpmI CTGGAG 1 cut(s) 1126
BpuEI CTTGAG 1 cut(s) 1064
Bsa29I ATCGAT 1 cut(s) 516
BsaBI GATNNNNATC 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 290, 835, 1103
Bse3DI GCAATG 2 cut(s) 813, 833
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 1 cut(s) 1105
BseCI ATCGAT 1 cut(s) 516
BseDI CCNNGG 3 cut(s) 290, 835, 1103
BseGI GGATG 3 cut(s) 363, 717, 990
BseJI GATNNNNATC 1 cut(s) 639
BseMI GCAATG 2 cut(s) 813, 833
BseMII CTCAG 4 cut(s) 30, 60, 217, 1183
BsgI GTGCAG 1 cut(s) 449
Bsh1236I CGCG 1 cut(s) 1154
BshFI GGCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 1086
BsmFI GGGAC 1 cut(s) 1086
BsmI GAATGC 1 cut(s) 1173
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 45, 88
Bsp143I GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 7 cut(s) 27, 88, 221, 430, 660, 995, 1152
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 4 cut(s) 31, 59, 216, 1182
BspDI ATCGAT 1 cut(s) 516
BspFNI CGCG 1 cut(s) 1154
BspLI GGNNCC 1 cut(s) 809
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 555
BsrBI CCGCTC 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 813, 833
BssECI CCNNGG 3 cut(s) 290, 835, 1103
BssMI GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
BssT1I CCWWGG 2 cut(s) 290, 835
Bst2UI CCWGG 1 cut(s) 1105
Bst4CI ACNGT 5 cut(s) 158, 177, 239, 308, 655
Bst6I CTCTTC 3 cut(s) 12, 555, 895
BstC8I GCNNGC 2 cut(s) 88, 920
BstDEI CTNAG 4 cut(s) 39, 46, 203, 1169
BstDSI CCRYGG 1 cut(s) 835
BstF5I GGATG 3 cut(s) 363, 717, 990
BstFNI CGCG 1 cut(s) 1154
BstKTI GATC 7 cut(s) 52, 115, 220, 478, 637, 1042, 1052
BstMBI GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNI CCWGG 1 cut(s) 1105
BstNSI RCATGY 3 cut(s) 235, 385, 1189
BstSCI CCNGG 1 cut(s) 1103
BstUI CGCG 1 cut(s) 1154
BstX2I RGATCY 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 1 cut(s) 634
Bsu15I ATCGAT 1 cut(s) 516
BsuRI GGCC 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 3 cut(s) 363, 717, 990
BtsIMutI CAGTG 2 cut(s) 235, 392
Cac8I GCNNGC 2 cut(s) 88, 920
Cfr13I GGNCC 2 cut(s) 207, 582
ClaI ATCGAT 1 cut(s) 516
Csp6I GTAC 2 cut(s) 572, 651
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviAII CATG 7 cut(s) 232, 260, 326, 382, 836, 1065, 1186
CviQI GTAC 2 cut(s) 572, 651
DdeI CTNAG 4 cut(s) 39, 46, 203, 1169
DpnI GATC 7 cut(s) 51, 114, 219, 477, 636, 1041, 1051
DpnII GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
DraIII CACNNNGTG 1 cut(s) 1155
Eam1104I CTCTTC 3 cut(s) 12, 555, 895
EarI CTCTTC 3 cut(s) 12, 555, 895
EciI GGCGGA 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 290, 835
Eco24I GRGCYC 2 cut(s) 45, 88
Eco47I GGWCC 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 3 cut(s) 361, 416, 579
EcoICRI GAGCTC 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 753
EcoRII CCWGG 1 cut(s) 1103
EcoT14I CCWWGG 2 cut(s) 290, 835
EcoT38I GRGCYC 2 cut(s) 45, 88
ErhI CCWWGG 2 cut(s) 290, 835
FaeI CATG 7 cut(s) 235, 263, 329, 385, 839, 1068, 1189
FaqI GGGAC 1 cut(s) 1086
FatI CATG 7 cut(s) 231, 259, 325, 381, 835, 1064, 1185
FauI CCCGC 2 cut(s) 95, 1002
FbaI TGATCA 1 cut(s) 112
FokI GGATG 3 cut(s) 350, 704, 977
FriOI GRGCYC 2 cut(s) 45, 88
FspBI CTAG 3 cut(s) 275, 531, 1098
GsuI CTGGAG 1 cut(s) 1126
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 7 cut(s) 235, 263, 329, 385, 839, 1068, 1189
HincII GTYRAC 3 cut(s) 24, 154, 1183
HindII GTYRAC 3 cut(s) 24, 154, 1183
HinfI GANTC 5 cut(s) 280, 539, 763, 1144, 1159
HpaI GTTAAC 1 cut(s) 1183
HphI GGTGA 2 cut(s) 378, 1141
Hpy166II GTNNAC 4 cut(s) 24, 154, 1062, 1183
Hpy188I TCNGA 5 cut(s) 49, 54, 183, 793, 1164
Hpy188III TCNNGA 7 cut(s) 139, 508, 614, 745, 805, 1053, 1081
Hpy8I GTNNAC 4 cut(s) 24, 154, 1062, 1183
HpyAV CCTTC 2 cut(s) 56, 385
HpyCH4III ACNGT 5 cut(s) 158, 177, 239, 308, 655
HpyCH4IV ACGT 2 cut(s) 678, 777
HpyCH4V TGCA 6 cut(s) 101, 235, 466, 818, 918, 1026
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 4 cut(s) 39, 46, 203, 1169
HpySE526I ACGT 2 cut(s) 678, 777
Hsp92II CATG 7 cut(s) 235, 263, 329, 385, 839, 1068, 1189
Ksp22I TGATCA 1 cut(s) 112
KspAI GTTAAC 1 cut(s) 1183
Kzo9I GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 276
LweI GCATC 3 cut(s) 433, 508, 574
MaeI CTAG 3 cut(s) 275, 531, 1098
MaeII ACGT 2 cut(s) 678, 777
MaeIII GTNAC 5 cut(s) 34, 384, 655, 935, 1043
MalI GATC 7 cut(s) 51, 114, 219, 477, 636, 1041, 1051
MbiI CCGCTC 1 cut(s) 662
MboI GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
MboII GAAGA 7 cut(s) 16, 29, 67, 572, 882, 911, 965
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 1 cut(s) 634
MhlI GDGCHC 2 cut(s) 45, 88
MlyI GAGTC 1 cut(s) 1168
MmeI TCCRAC 1 cut(s) 760
MnlI CCTC 6 cut(s) 70, 358, 362, 724, 821, 893
MseI TTAA 3 cut(s) 369, 681, 1182
MslI CAYNNNNRTG 3 cut(s) 140, 450, 872
MspA1I CMGCKG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 1105
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 1173
MvaI CCWGG 1 cut(s) 1105
MvnI CGCG 1 cut(s) 1154
MwoI GCNNNNNNNGC 1 cut(s) 527
NcoI CCATGG 1 cut(s) 835
NdeII GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
NlaIII CATG 7 cut(s) 235, 263, 329, 385, 839, 1068, 1189
NlaIV GGNNCC 1 cut(s) 809
NmuCI GTSAC 1 cut(s) 384
NspI RCATGY 3 cut(s) 235, 385, 1189
PciSI GCTCTTC 1 cut(s) 555
PctI GAATGC 1 cut(s) 1173
PfeI GAWTC 4 cut(s) 280, 539, 763, 1144
PleI GAGTC 1 cut(s) 1167
PpsI GAGTC 1 cut(s) 1167
PsiI TTATAA 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 45
Psp1406I AACGTT 1 cut(s) 777
Psp6I CCWGG 1 cut(s) 1103
PspGI CCWGG 1 cut(s) 1103
PspN4I GGNNCC 1 cut(s) 809
PspPI GGNCC 2 cut(s) 207, 582
PsuI RGATCY 1 cut(s) 634
RsaI GTAC 2 cut(s) 573, 652
RsaNI GTAC 2 cut(s) 572, 651
RseI CAYNNNNRTG 3 cut(s) 140, 450, 872
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 3 cut(s) 369, 681, 1182
Sau3AI GATC 7 cut(s) 49, 112, 217, 475, 634, 1039, 1049
Sau96I GGNCC 2 cut(s) 207, 582
SchI GAGTC 1 cut(s) 1168
ScrFI CCNGG 1 cut(s) 1105
SduI GDGCHC 2 cut(s) 45, 88
SfaNI GCATC 3 cut(s) 433, 508, 574
SinI GGWCC 1 cut(s) 582
SmiMI CAYNNNNRTG 3 cut(s) 140, 450, 872
SmlI CTYRAG 1 cut(s) 1079
SmoI CTYRAG 1 cut(s) 1079
SsiI CCGC 7 cut(s) 27, 88, 221, 430, 660, 995, 1152
SspMI CTAG 3 cut(s) 275, 531, 1098
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 1103
StyI CCWWGG 2 cut(s) 290, 835
TaaI ACNGT 5 cut(s) 158, 177, 239, 308, 655
TaiI ACGT 2 cut(s) 681, 780
TaqI TCGA 4 cut(s) 138, 516, 941, 1052
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 4 cut(s) 280, 539, 763, 1144
Tru1I TTAA 3 cut(s) 369, 681, 1182
Tru9I TTAA 3 cut(s) 369, 681, 1182
TscAI CASTG 2 cut(s) 242, 399
TseFI GTSAC 1 cut(s) 384
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 7 cut(s) 17, 75, 124, 236, 342, 357, 966
TspRI CASTG 2 cut(s) 242, 399
VpaK11BI GGWCC 1 cut(s) 582
XapI RAATTY 5 cut(s) 193, 683, 753, 1091, 1110
XceI RCATGY 3 cut(s) 235, 385, 1189
XspI CTAG 3 cut(s) 275, 531, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.