RLG00000035208

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000417
Physical Location & Seq
Forward (+)
62887735 .. 62888333
599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035208

Sequence Viewer

Length: 411 bp
ATGGCGGAAAATCATGATACTGTTATATGTGTTGATGGCGGCAAGAATTGCATCTTCAGAGTTCCTAAGGTGCTCCAGAAACATAACCCAGACGCATATACACCTTGTGTTCTCTCGATTGGACCTTTTCATCATCAAAAAAAGGGAAGCGAGGATGAAGGGAAAGATGACAAGGAGGAAGGCAAAGATGGGAAGGATAAAAAATATTTCCAACTCGTGGAACGAATGAAAGAGAGGTATTTGAATGAAGTCCTCTCATGCATGCACATAAATTTGAAAGAGTTGATTGCAAAAGTTGTTGAGCTTTCAGATCAAAAGAATGATGGGCCTATTCAGTTTGAGAAAGGCGCCCGCGATCTCTATGCAGAAAAACTTGATTATGAATCCATGCCAATTACTTCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

6.21

Isoelectric Point (pI)

27.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 18 - 128 4e-14 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 217
AccII CGCG 1 cut(s) 354
AciI CCGC 3 cut(s) 5, 39, 352
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 3 cut(s) 244, 277, 402
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 75
AoxI GGCC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 122, 326
AvaII GGWCC 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 66
BanI GGYRCC 1 cut(s) 347
BauI CACGAG 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 3 cut(s) 29, 182, 317
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BfoI RGCGCY 1 cut(s) 351
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 122, 326
BmiI GGNNCC 1 cut(s) 349
BmsI GCATC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse21I CCTNAGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 328
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 217
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 310, 355
BspACI CCGC 3 cut(s) 5, 39, 352
BspANI GGCC 1 cut(s) 328
BspFNI CGCG 1 cut(s) 354
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 347
BssMI GATC 2 cut(s) 310, 355
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 263, 352
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 2 cut(s) 313, 358
BstMBI GATC 2 cut(s) 310, 355
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 265
BstUI CGCG 1 cut(s) 354
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 263, 352
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 2 cut(s) 122, 326
CseI GACGC 1 cut(s) 101
CviAII CATG 4 cut(s) 14, 258, 262, 388
CviJI RGCY 2 cut(s) 304, 328
CviKI_1 RGCY 2 cut(s) 304, 328
DdeI CTNAG 1 cut(s) 66
DinI GGCGCC 1 cut(s) 349
DpnI GATC 2 cut(s) 312, 357
DpnII GATC 2 cut(s) 310, 355
DraIII CACNNNGTG 1 cut(s) 107
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 263
EgeI GGCGCC 1 cut(s) 349
EheI GGCGCC 1 cut(s) 349
FaeI CATG 4 cut(s) 17, 261, 265, 391
FatI CATG 4 cut(s) 13, 257, 261, 387
FauI CCCGC 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 40
GlaI GCGC 1 cut(s) 349
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 1 cut(s) 328
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 4 cut(s) 17, 261, 265, 391
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 59, 310
Hpy188III TCNNGA 3 cut(s) 14, 76, 115
HpyAV CCTTC 3 cut(s) 152, 173, 187
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 51, 261, 265, 290, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 4 cut(s) 17, 261, 265, 391
HspAI GCGC 1 cut(s) 348
KasI GGCGCC 1 cut(s) 347
Kzo9I GATC 2 cut(s) 310, 355
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 2 cut(s) 89, 102
LweI GCATC 1 cut(s) 60
MalI GATC 2 cut(s) 312, 357
MboI GATC 2 cut(s) 310, 355
MboII GAAGA 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 46, 271, 393
Mly113I GGCGCC 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 145, 169, 228, 263
Mph1103I ATGCAT 1 cut(s) 263
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 48
NarI GGCGCC 1 cut(s) 348
NdeII GATC 2 cut(s) 310, 355
NlaIII CATG 4 cut(s) 17, 261, 265, 391
NlaIV GGNNCC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 263
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PagI TCATGA 1 cut(s) 13
PfeI GAWTC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 1 cut(s) 41
PluTI GGCGCC 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 122, 326
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 310, 355
Sau96I GGNCC 2 cut(s) 122, 326
SduI GDGCHC 1 cut(s) 75
SetI ASST 5 cut(s) 72, 106, 127, 239, 306
SfaNI GCATC 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 349
SinI GGWCC 1 cut(s) 122
SphI GCATGC 1 cut(s) 265
Sse9I AATT 3 cut(s) 46, 271, 393
SsiI CCGC 3 cut(s) 5, 39, 352
SspDI GGCGCC 1 cut(s) 347
SspI AATATT 1 cut(s) 206
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 116
TasI AATT 3 cut(s) 46, 271, 393
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 383
TspDTI ATGAA 5 cut(s) 119, 171, 242, 261, 396
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 271
XceI RCATGY 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.