RLG00000009935

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000417
Physical Location & Seq
Forward (+)
60593830 .. 60595191
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009935

Sequence Viewer

Length: 1362 bp
ATGGGACCTTTTCATCATTACCGAGAAAAGCAAGGCAAGGAGGAAGGTAAAGGAGGCAAGGGAGGCAACGAAGGCAAGGGCGAGGAACATTTCCAACTGACGGAACGAGTGAAGAAGAGCTATTTGAATGGAATTCTCACAGGTATGAAGATTACTTTGGAAGAGTTGACCGCAAAAGTTACTGAGCTATCAGATCAGAAAAATGAAGGTGGCTTTGAGGAACGAGCCCGCAATTTTTATGCAGAACCACTTGATCATATTTCTTCCAAAGACTTCATCGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGTAAGCGTGATGATCCGAAACTTAGGGCCTTTGATGACCCGGTGTTCAACATGGATTGTATGTTTCATTTCCTATGCCATGACATTTTGCTTCTAGAGAATCAACTACCTTGGTTTGTTATCCACAGTTTGTATGGCCTTACCCTTGATATATACTCTGGAGAAGCTTCCCGTGATGTGTACTCTGGTGAAGCTTCCCTCTCTATGCTAATCCTGAAAGCGCTTAGCATACTACCATCACTGAAGCATAGTTGCTCAACCTATAAAAAAAATCTCCATGAAAACGAGTGTCATTGTGATGCTGATGTTCTGCACATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTAACTAACATAAAAGAGACAGGGCATAAAGCAGCTTGTAAAGAAGGTACATCCAACCCTCAAGAACATCAAGTGCACACTGGGAACAAAGACAAGAGAGACAATAAAGCTGTTCATGAAGACCCAGATCAAAATCAAATTCGTACCGCAACCGCTCTCTCAAAGGCAGACATTAAATTCAAAAGCATCGAAAAGGATAGCATAATGGCCATCCAATTCAAAGAGGGTGGGTGGTTCAGGAATGGGATTCTTGAGATTCCACAGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATTGAGCAATGCTACCATGGTTATTCAAACGAGATAACATCTTATGCCATCTTTATGGATAACCTCATATCTTCAAAGGAAGATATGGAATTACTTTGCAAGGAAAAAGTAATTGGTAACTGGATGAGTGATGAAGATGGTCGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAATAAGTTCTACTATGTTGAGCTGTGCGAAAAAGTGAATGATCGTTACAGGTCGAGATGGCATACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAATCCCTGGAGAATTTTAGCTTTCGGGATAGGTATCTTCATTTTGATTCTCACTGCGTGCAGTCAGACACTCAACATTCGGGTTAACATGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

454

Amino Acids

52.07

Weight (kDa)

6.27

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 438 9.5e-88 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 827
AciI CCGC 5 cut(s) 171, 229, 819, 825, 1160
AclI AACGTT 1 cut(s) 942
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 5 cut(s) 132, 810, 848, 1256, 1275
AcuI CTGAAG 2 cut(s) 584, 1120
AdeI CACNNNGTG 1 cut(s) 1320
AfaI GTAC 3 cut(s) 503, 721, 817
AfeI AGCGCT 1 cut(s) 543
AfiI CCNNNNNNNGG 2 cut(s) 100, 1150
AgsI TTSAA 7 cut(s) 127, 314, 370, 853, 892, 1011, 1059
AjnI CCWGG 1 cut(s) 1268
AjuI GAANNNNNNNTTGG 4 cut(s) 140, 172, 1080, 1112
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 2 cut(s) 683, 765
Alw44I GTGCAC 1 cut(s) 746
AlwI GGATC 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 543
AoxI GGCC 3 cut(s) 348, 457, 879
ApaLI GTGCAC 1 cut(s) 746
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 5 cut(s) 132, 810, 848, 1256, 1275
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 5, 348
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 750
BalI TGGCCA 1 cut(s) 881
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 716
BccI CCATC 5 cut(s) 565, 890, 1040, 1115, 1215
BciT130I CCWGG 1 cut(s) 1270
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 683, 765
BfaI CTAG 1 cut(s) 416
BfoI RGCGCY 1 cut(s) 545
BisI GCNGC 1 cut(s) 705
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 1 cut(s) 706
Bme1390I CCNGG 2 cut(s) 362, 1270
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 5, 348
BmiI GGNNCC 2 cut(s) 6, 974
BmrFI CCNGG 2 cut(s) 362, 1270
BmrI ACTGGG 1 cut(s) 762
BmsI GCATC 2 cut(s) 610, 867
BmuI ACTGGG 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 798
BpmI CTGGAG 2 cut(s) 501, 1291
Bpu1102I GCTNAGC 1 cut(s) 545
BpuEI CTTGAG 3 cut(s) 717, 944, 1229
BpuMI CCSGG 1 cut(s) 362
BsaBI GATNNNNATC 2 cut(s) 804, 1295
BsaJI CCNNGG 3 cut(s) 431, 1000, 1268
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 1150
Bse1I ACTGG 2 cut(s) 757, 1109
Bse3DI GCAATG 2 cut(s) 978, 998
Bse8I GATNNNNATC 2 cut(s) 804, 1295
BseBI CCWGG 1 cut(s) 1270
BseDI CCNNGG 3 cut(s) 431, 1000, 1268
BseGI GGATG 4 cut(s) 722, 882, 1113, 1155
BseJI GATNNNNATC 2 cut(s) 804, 1295
BseLI CCNNNNNNNGG 2 cut(s) 100, 1150
BseMI GCAATG 2 cut(s) 978, 998
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 757, 1109
BseSI GKGCMC 1 cut(s) 750
BseXI GCAGC 1 cut(s) 716
BsgI GTGCAG 2 cut(s) 617, 1342
BshFI GGCC 3 cut(s) 350, 459, 881
BsiHKAI GWGCWC 1 cut(s) 750
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 100, 1150
BsmAI GTCTC 2 cut(s) 683, 765
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 350, 459, 881
Bsp1286I GDGCHC 2 cut(s) 229, 750
Bsp143I GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
Bsp1720I GCTNAGC 1 cut(s) 545
Bsp19I CCATGG 1 cut(s) 1000
BspACI CCGC 5 cut(s) 171, 229, 819, 825, 1160
BspANI GGCC 3 cut(s) 350, 459, 881
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 6, 974
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 978, 998
BsrI ACTGG 2 cut(s) 757, 1109
BssECI CCNNGG 3 cut(s) 431, 1000, 1268
BssMI GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
BssT1I CCWWGG 2 cut(s) 431, 1000
Bst2UI CCWGG 1 cut(s) 1270
Bst4CI ACNGT 3 cut(s) 299, 318, 449
Bst6I CTCTTC 2 cut(s) 110, 156
BstC8I GCNNGC 2 cut(s) 229, 1321
BstDEI CTNAG 3 cut(s) 183, 344, 545
BstDSI CCRYGG 1 cut(s) 1000
BstENI CCTNNNNNAGG 1 cut(s) 1148
BstF5I GGATG 4 cut(s) 722, 882, 1113, 1155
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 6 cut(s) 196, 256, 337, 646, 802, 1207
BstMAI GTCTC 2 cut(s) 683, 765
BstMBI GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
BstMWI GCNNNNNNNGC 2 cut(s) 63, 72
BstNI CCWGG 1 cut(s) 1270
BstNSI RCATGY 1 cut(s) 1354
BstSCI CCNGG 2 cut(s) 360, 1268
BstSLI GKGCMC 1 cut(s) 750
BstV1I GCAGC 1 cut(s) 716
BstV2I GAAGAC 1 cut(s) 798
BstXI CCANNNNNNTGG 1 cut(s) 1039
BsuRI GGCC 3 cut(s) 350, 459, 881
BtgI CCRYGG 1 cut(s) 1000
BtsCI GGATG 4 cut(s) 722, 882, 1113, 1155
BtsI GCAGTG 1 cut(s) 1314
BtsIMutI CAGTG 3 cut(s) 560, 750, 1314
Cac8I GCNNGC 2 cut(s) 229, 1321
CciI TCATGA 1 cut(s) 787
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 5, 348
Csp6I GTAC 3 cut(s) 502, 720, 816
CspCI CAANNNNNGTGG 2 cut(s) 880, 915
CviAII CATG 7 cut(s) 373, 401, 599, 788, 1001, 1230, 1351
CviQI GTAC 3 cut(s) 502, 720, 816
DdeI CTNAG 3 cut(s) 183, 344, 545
DpnI GATC 6 cut(s) 195, 255, 336, 645, 801, 1206
DpnII GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
DraIII CACNNNGTG 1 cut(s) 1320
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 2 cut(s) 110, 156
EarI CTCTTC 2 cut(s) 110, 156
Eco130I CCWWGG 2 cut(s) 431, 1000
Eco24I GRGCYC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 5
Eco47III AGCGCT 1 cut(s) 543
Eco57I CTGAAG 2 cut(s) 584, 1120
EcoNI CCTNNNNNAGG 1 cut(s) 1148
EcoO109I RGGNCCY 2 cut(s) 5, 348
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 1268
EcoT14I CCWWGG 2 cut(s) 431, 1000
EcoT22I ATGCAT 1 cut(s) 1356
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 431, 1000
FaeI CATG 7 cut(s) 376, 404, 602, 791, 1004, 1233, 1354
FaqI GGGAC 1 cut(s) 18
FatI CATG 7 cut(s) 372, 400, 598, 787, 1000, 1229, 1350
FauI CCCGC 2 cut(s) 236, 1167
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 705
FokI GGATG 4 cut(s) 709, 869, 1120, 1142
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 705
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 543
GluI GCNGC 1 cut(s) 705
GsuI CTGGAG 2 cut(s) 501, 1291
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 3 cut(s) 350, 459, 881
HapII CCGG 1 cut(s) 362
HhaI GCGC 1 cut(s) 544
Hin1II CATG 7 cut(s) 376, 404, 602, 791, 1004, 1233, 1354
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HincII GTYRAC 3 cut(s) 168, 295, 1348
HindII GTYRAC 3 cut(s) 168, 295, 1348
HindIII AAGCTT 2 cut(s) 486, 513
HinfI GANTC 4 cut(s) 421, 919, 928, 1309
HpaI GTTAAC 1 cut(s) 1348
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 5 cut(s) 168, 295, 502, 748, 1348
Hpy188I TCNGA 5 cut(s) 193, 198, 339, 958, 1329
Hpy8I GTNNAC 5 cut(s) 168, 295, 502, 748, 1348
HpyAV CCTTC 4 cut(s) 38, 65, 200, 710
HpyCH4III ACNGT 3 cut(s) 299, 318, 449
HpyCH4IV ACGT 1 cut(s) 942
HpyCH4V TGCA 7 cut(s) 242, 634, 748, 983, 1083, 1323, 1354
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 72
HpyF3I CTNAG 3 cut(s) 183, 344, 545
HpySE526I ACGT 1 cut(s) 942
Hsp92II CATG 7 cut(s) 376, 404, 602, 791, 1004, 1233, 1354
HspAI GCGC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 1348
Kzo9I GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
LguI GCTCTTC 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 716
LweI GCATC 2 cut(s) 610, 867
MaeI CTAG 1 cut(s) 416
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 3 cut(s) 178, 1100, 1208
MalI GATC 6 cut(s) 195, 255, 336, 645, 801, 1206
MbiI CCGCTC 1 cut(s) 827
MboI GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
MfeI CAATTG 1 cut(s) 984
MhlI GDGCHC 2 cut(s) 229, 750
MlsI TGGCCA 1 cut(s) 881
MluNI TGGCCA 1 cut(s) 881
MmeI TCCRAC 3 cut(s) 118, 750, 925
Mox20I TGGCCA 1 cut(s) 881
Mph1103I ATGCAT 1 cut(s) 1356
MscI TGGCCA 1 cut(s) 881
MseI TTAA 3 cut(s) 674, 846, 1347
MslI CAYNNNNRTG 4 cut(s) 143, 281, 618, 1037
Msp20I TGGCCA 1 cut(s) 881
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 362, 1270
MunI CAATTG 1 cut(s) 984
MvaI CCWGG 1 cut(s) 1270
MwoI GCNNNNNNNGC 2 cut(s) 63, 72
NciI CCSGG 1 cut(s) 362
NcoI CCATGG 1 cut(s) 1000
NdeII GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
NlaIII CATG 7 cut(s) 376, 404, 602, 791, 1004, 1233, 1354
NlaIV GGNNCC 2 cut(s) 6, 974
NsiI ATGCAT 1 cut(s) 1356
NspI RCATGY 1 cut(s) 1354
PagI TCATGA 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 110
PfeI GAWTC 4 cut(s) 421, 919, 928, 1309
PkrI GCNGC 1 cut(s) 706
PpuMI RGGWCCY 1 cut(s) 5
Psp1406I AACGTT 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 1268
PspGI CCWGG 1 cut(s) 1268
PspN4I GGNNCC 2 cut(s) 6, 974
PspPI GGNCC 2 cut(s) 5, 348
PspPPI RGGWCCY 1 cut(s) 5
RsaI GTAC 3 cut(s) 503, 721, 817
RsaNI GTAC 3 cut(s) 502, 720, 816
RseI CAYNNNNRTG 4 cut(s) 143, 281, 618, 1037
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 3 cut(s) 674, 846, 1347
SatI GCNGC 1 cut(s) 705
Sau3AI GATC 6 cut(s) 193, 253, 334, 643, 799, 1204
Sau96I GGNCC 2 cut(s) 5, 348
ScrFI CCNGG 2 cut(s) 362, 1270
SduI GDGCHC 2 cut(s) 229, 750
SfaNI GCATC 2 cut(s) 610, 867
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 4 cut(s) 143, 281, 618, 1037
SmlI CTYRAG 3 cut(s) 732, 923, 1244
SmoI CTYRAG 3 cut(s) 732, 923, 1244
SsiI CCGC 5 cut(s) 171, 229, 819, 825, 1160
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 2 cut(s) 360, 1268
StyI CCWWGG 2 cut(s) 431, 1000
TaaI ACNGT 3 cut(s) 299, 318, 449
TaiI ACGT 1 cut(s) 945
TaqI TCGA 3 cut(s) 279, 861, 1217
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 4 cut(s) 421, 919, 928, 1309
Tru1I TTAA 3 cut(s) 674, 846, 1347
Tru9I TTAA 3 cut(s) 674, 846, 1347
TscAI CASTG 3 cut(s) 567, 757, 1321
TseI GCWGC 1 cut(s) 704
TspDTI ATGAA 9 cut(s) 161, 219, 265, 377, 615, 776, 804, 1131, 1291
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 3 cut(s) 567, 757, 1321
VneI GTGCAC 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 5
XagI CCTNNNNNAGG 1 cut(s) 1148
XapI RAATTY 5 cut(s) 132, 810, 848, 1256, 1275
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 1 cut(s) 1354
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.