Rorug05G0312900

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000417
Physical Location & Seq
Reverse (-)
36983047 .. 36987644
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0312900.1

Sequence Viewer

Length: 1284 bp
ATGATGGGTGAACCATCGTTACAAGAGACGAATGAGGATGCTGTTGTAGATGAACCAAAACTTCAGCTTGGTCAAGAATTTGAATCAATAGAGGAGGCCTATTACTTTTACAATGAGATATATGCAAAGACTGTTGGTTTTAGTGTGAGAATGGGTTCAACTAAGAGAAGTAAGGTGACTGGAGATATTACTTGGAAACAATTTTTATGTTCCAAGGAAGGAAAAACAGATGACACTTATGAGAACTCAAGACGGCAACATTCATTGACCATGGAAGAAAGGAGGTGCGGAATAAAGCGTATGGGTTGTAAGGCAAGGTTGAACATCGTCTTTAACAAGGCAAGCAAAAAATGGTGTGTAAGTGACTTCGAGGAGGCTCATACACATGAACTTACAACCCCCAAAAGAGTACATTTATTACCATCACACCGCAAGCTTACAAAGGCAAAGAAGTGTCTCATGGAAAAGCTAAGTAGTGTTAATGTTCGAACAAGTCAGCAATTCAAAATAATGGAGACTGTGGCAGGTGGTATACAGAATGTTGGATGTATTCCAAGAGATTTGAGAAACTTTGAAAGAGATTCGAGGGAAGAAGTGAAGGGACATGATGCAACTATGCTACTTGAGTTCTTAGAGTCAGAAAAGGAAAAGAAGCAGTCTTTTTATTTTGAAGTTGACCGAGATGAAGAAAATAGGATGAATCGCTGCTTTTGGGCTGATCCTACCTCAAAAAAAGCATATTATTTCTTTAACGATGTTGTTGTGTTTGATACCACGTACAACACAAACAAATATCGCATGATCTTTGCTCCAATCACAGGCGTCAACCATCATGGCCAGACAATTGTATTTGGTTGTGGACTTTTAAGTGATGAGAAAACTGAGTCTTTTATTTGGTTACTGGAACAATGGTTGAAAGCTATGCCTAGTGGTCCACCGAAAGTTATAATTACTGATCAAGATCCAGCAATTGCAAAAGCCATTGCTCAAGTTCTTCCACTTACACTCCACCGTTTTTGTCTTTGGCATATCATGTTTAAATTTCGAGATAAGCTTGGTCCTGTGATTGCCCAAAGTTATTATGGACTCTTCAAAGCCAGTGTATATAACTCCGGGACTAAAGAAGAATTTGAAGCTAGTTGGAAGAATGCTGTGCAACAAAGTAGTCAAGAAAATCATGCTTGGTTGAACACAATGTATGAACTACGAAGTAAATGGGTCCCTGCATTTTGCAATCACATCTTTCATGCAGGTTTTCATACTGAAGAAGTAGAAAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

427

Amino Acids

49.66

Weight (kDa)

7.95

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 36 - 132 1.8e-17 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 217 - 333 4.4e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 253 - 345 8.8e-32 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 947
AarI CACCTGC 1 cut(s) 515
Acc36I ACCTGC 2 cut(s) 515, 1241
AccI GTMKAC 1 cut(s) 532
AciI CCGC 2 cut(s) 288, 430
AclWI GGATC 2 cut(s) 713, 956
AcoI YGGCCR 1 cut(s) 835
AcsI RAATTY 3 cut(s) 77, 1040, 1127
AcuI CTGAAG 2 cut(s) 47, 1284
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 2 cut(s) 411, 779
AfiI CCNNNNNNNGG 1 cut(s) 818
AluBI AGCT 6 cut(s) 67, 436, 469, 920, 1054, 1136
AluI AGCT 6 cut(s) 67, 436, 469, 920, 1054, 1136
Alw26I GTCTC 3 cut(s) 20, 461, 509
AlwI GGATC 2 cut(s) 713, 956
AoxI GGCC 2 cut(s) 96, 835
ApeKI GCWGC 1 cut(s) 705
ApoI RAATTY 3 cut(s) 77, 1040, 1127
Asp700I GAANNNNTTC 1 cut(s) 154
AspS9I GGNCC 3 cut(s) 932, 1058, 1219
AsuC2I CCSGG 1 cut(s) 1114
AsuHPI GGTGA 2 cut(s) 20, 187
AsuII TTCGAA 1 cut(s) 487
AvaII GGWCC 3 cut(s) 932, 1058, 1219
BalI TGGCCA 1 cut(s) 837
BbvI GCAGC 1 cut(s) 692
BccI CCATC 3 cut(s) 22, 430, 837
BceAI ACGGC 1 cut(s) 269
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 1 cut(s) 1114
BcoDI GTCTC 3 cut(s) 20, 461, 509
BfaI CTAG 2 cut(s) 927, 1137
BfuAI ACCTGC 2 cut(s) 515, 1241
BisI GCNGC 1 cut(s) 706
BlsI GCNGC 1 cut(s) 707
Bme1390I CCNGG 1 cut(s) 1114
Bme18I GGWCC 3 cut(s) 932, 1058, 1219
BmgT120I GGNCC 3 cut(s) 932, 1058, 1219
BmiI GGNNCC 2 cut(s) 1220, 1221
BmrFI CCNGG 1 cut(s) 1114
BmsI GCATC 2 cut(s) 28, 598
BpmI CTGGAG 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 487
BpuEI CTTGAG 3 cut(s) 232, 644, 972
BpuMI CCSGG 1 cut(s) 1114
BsaAI YACGTR 1 cut(s) 777
BsaBI GATNNNNATC 1 cut(s) 960
BsaHI GRCGYC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 213, 270
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bsc4I CCNNNNNNNGG 1 cut(s) 818
Bse1I ACTGG 3 cut(s) 184, 906, 1098
Bse3DI GCAATG 1 cut(s) 981
Bse8I GATNNNNATC 1 cut(s) 960
BseDI CCNNGG 2 cut(s) 213, 270
BseGI GGATG 3 cut(s) 43, 551, 702
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 1 cut(s) 818
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 1 cut(s) 873
BseNI ACTGG 3 cut(s) 184, 906, 1098
BseRI GAGGAG 2 cut(s) 107, 386
BseXI GCAGC 1 cut(s) 692
BshFI GGCC 2 cut(s) 98, 837
BsiSI CCGG 1 cut(s) 1113
BslFI GGGAC 3 cut(s) 615, 1129, 1205
BslI CCNNNNNNNGG 1 cut(s) 818
BsmAI GTCTC 3 cut(s) 20, 461, 509
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 3 cut(s) 615, 1129, 1205
BsmI GAATGC 1 cut(s) 1153
BsnI GGCC 2 cut(s) 98, 837
Bsp119I TTCGAA 1 cut(s) 487
Bsp143I GATC 4 cut(s) 718, 801, 955, 961
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 2 cut(s) 288, 430
BspANI GGCC 2 cut(s) 98, 837
BspCNI CTCAG 1 cut(s) 874
BspLI GGNNCC 2 cut(s) 1220, 1221
BspMI ACCTGC 2 cut(s) 515, 1241
BspPI GGATC 2 cut(s) 713, 956
BspT104I TTCGAA 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 3 cut(s) 184, 906, 1098
BssECI CCNNGG 2 cut(s) 213, 270
BssMI GATC 4 cut(s) 718, 801, 955, 961
BssNAI GTATAC 1 cut(s) 533
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 2 cut(s) 213, 270
Bst1107I GTATAC 1 cut(s) 533
Bst4CI ACNGT 3 cut(s) 133, 520, 1013
Bst6I CTCTTC 1 cut(s) 1094
BstACI GRCGYC 1 cut(s) 822
BstBAI YACGTR 1 cut(s) 777
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 343, 434
BstDEI CTNAG 4 cut(s) 162, 470, 631, 882
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 43, 551, 702
BstKTI GATC 4 cut(s) 721, 804, 958, 964
BstMAI GTCTC 3 cut(s) 20, 461, 509
BstMBI GATC 4 cut(s) 718, 801, 955, 961
BstSCI CCNGG 1 cut(s) 1112
BstV1I GCAGC 1 cut(s) 692
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
BstZ17I GTATAC 1 cut(s) 533
BsuRI GGCC 2 cut(s) 98, 837
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 3 cut(s) 43, 551, 702
BtsIMutI CAGTG 1 cut(s) 1105
BveI ACCTGC 2 cut(s) 515, 1241
Cac8I GCNNGC 2 cut(s) 343, 434
Cfr13I GGNCC 3 cut(s) 932, 1058, 1219
CseI GACGC 1 cut(s) 811
Csp6I GTAC 2 cut(s) 410, 778
CspCI CAANNNNNGTGG 2 cut(s) 998, 1033
CviAII CATG 9 cut(s) 271, 386, 460, 605, 799, 833, 1033, 1178, 1247
CviQI GTAC 2 cut(s) 410, 778
DdeI CTNAG 4 cut(s) 162, 470, 631, 882
DpnI GATC 4 cut(s) 720, 803, 957, 963
DpnII GATC 4 cut(s) 718, 801, 955, 961
DraI TTTAAA 1 cut(s) 1039
EaeI YGGCCR 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 1094
EarI CTCTTC 1 cut(s) 1094
Eco130I CCWWGG 2 cut(s) 213, 270
Eco147I AGGCCT 1 cut(s) 98
Eco47I GGWCC 3 cut(s) 932, 1058, 1219
Eco57I CTGAAG 2 cut(s) 47, 1284
EcoO109I RGGNCCY 1 cut(s) 1219
EcoT14I CCWWGG 2 cut(s) 213, 270
ErhI CCWWGG 2 cut(s) 213, 270
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 9 cut(s) 274, 389, 463, 608, 802, 836, 1036, 1181, 1250
FaqI GGGAC 3 cut(s) 615, 1129, 1205
FatI CATG 9 cut(s) 270, 385, 459, 604, 798, 832, 1032, 1177, 1246
FbaI TGATCA 1 cut(s) 955
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 706
FokI GGATG 3 cut(s) 50, 558, 709
Fsp4HI GCNGC 1 cut(s) 706
FspBI CTAG 2 cut(s) 927, 1137
GluI GCNGC 1 cut(s) 706
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 98, 837
HapII CCGG 1 cut(s) 1113
HgaI GACGC 1 cut(s) 811
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 9 cut(s) 274, 389, 463, 608, 802, 836, 1036, 1181, 1250
HincII GTYRAC 2 cut(s) 676, 826
HindII GTYRAC 2 cut(s) 676, 826
HindIII AAGCTT 2 cut(s) 434, 1052
HinfI GANTC 6 cut(s) 83, 581, 635, 700, 884, 1086
HpaII CCGG 1 cut(s) 1113
HphI GGTGA 2 cut(s) 20, 187
Hpy166II GTNNAC 6 cut(s) 11, 533, 676, 826, 860, 935
Hpy188I TCNGA 1 cut(s) 640
Hpy188III TCNNGA 5 cut(s) 74, 249, 959, 1046, 1169
Hpy8I GTNNAC 6 cut(s) 11, 533, 676, 826, 860, 935
HpyAV CCTTC 2 cut(s) 212, 592
HpyCH4III ACNGT 3 cut(s) 133, 520, 1013
HpyCH4IV ACGT 1 cut(s) 776
HpyCH4V TGCA 7 cut(s) 125, 611, 974, 1156, 1226, 1233, 1250
HpyF3I CTNAG 4 cut(s) 162, 470, 631, 882
HpySE526I ACGT 1 cut(s) 776
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 9 cut(s) 274, 389, 463, 608, 802, 836, 1036, 1181, 1250
KflI GGGWCCC 1 cut(s) 1219
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 4 cut(s) 718, 801, 955, 961
LmnI GCTCC 1 cut(s) 814
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 2 cut(s) 28, 598
MaeI CTAG 2 cut(s) 927, 1137
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 4 cut(s) 18, 175, 362, 897
MalI GATC 4 cut(s) 720, 803, 957, 963
MboI GATC 4 cut(s) 718, 801, 955, 961
MboII GAAGA 8 cut(s) 287, 602, 698, 986, 1081, 1136, 1156, 1277
MfeI CAATTG 2 cut(s) 843, 969
MflI RGATCY 1 cut(s) 961
MlsI TGGCCA 1 cut(s) 837
MluCI AATT 8 cut(s) 77, 200, 500, 843, 948, 969, 1040, 1127
MluNI TGGCCA 1 cut(s) 837
MlyI GAGTC 3 cut(s) 644, 893, 1080
MmeI TCCRAC 2 cut(s) 523, 1121
MnlI CCTC 8 cut(s) 28, 85, 88, 276, 364, 367, 579, 736
Mox20I TGGCCA 1 cut(s) 837
MroXI GAANNNNTTC 1 cut(s) 154
MscI TGGCCA 1 cut(s) 837
MseI TTAA 5 cut(s) 333, 480, 750, 866, 1038
MslI CAYNNNNRTG 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 837
MspI CCGG 1 cut(s) 1113
MspR9I CCNGG 1 cut(s) 1114
MunI CAATTG 2 cut(s) 843, 969
Mva1269I GAATGC 1 cut(s) 1153
NciI CCSGG 1 cut(s) 1114
NcoI CCATGG 1 cut(s) 270
NdeII GATC 4 cut(s) 718, 801, 955, 961
NlaIII CATG 9 cut(s) 274, 389, 463, 608, 802, 836, 1036, 1181, 1250
NlaIV GGNNCC 2 cut(s) 1220, 1221
NmuCI GTSAC 2 cut(s) 175, 362
NspV TTCGAA 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 515
PceI AGGCCT 1 cut(s) 98
PctI GAATGC 1 cut(s) 1153
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 3 cut(s) 83, 581, 700
PfoI TCCNGGA 1 cut(s) 1112
PkrI GCNGC 1 cut(s) 707
PleI GAGTC 3 cut(s) 643, 892, 1080
PpsI GAGTC 3 cut(s) 643, 892, 1080
Ppu21I YACGTR 1 cut(s) 777
PpuMI RGGWCCY 1 cut(s) 1219
PsiI TTATAA 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 1219
PspN4I GGNNCC 2 cut(s) 1220, 1221
PspPI GGNCC 3 cut(s) 932, 1058, 1219
PspPPI RGGWCCY 1 cut(s) 1219
PsrI GAACNNNNNNTAC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 961
RsaI GTAC 2 cut(s) 411, 779
RsaNI GTAC 2 cut(s) 410, 778
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 5 cut(s) 333, 480, 750, 866, 1038
SatI GCNGC 1 cut(s) 706
Sau3AI GATC 4 cut(s) 718, 801, 955, 961
Sau96I GGNCC 3 cut(s) 932, 1058, 1219
SchI GAGTC 3 cut(s) 644, 893, 1080
ScrFI CCNGG 1 cut(s) 1114
SfaNI GCATC 2 cut(s) 28, 598
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 3 cut(s) 932, 1058, 1219
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 3 cut(s) 247, 623, 987
SmoI CTYRAG 3 cut(s) 247, 623, 987
Sse9I AATT 8 cut(s) 77, 200, 500, 843, 948, 969, 1040, 1127
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 2 cut(s) 288, 430
SspMI CTAG 2 cut(s) 927, 1137
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 1112
StyI CCWWGG 2 cut(s) 213, 270
TaaI ACNGT 3 cut(s) 133, 520, 1013
TaiI ACGT 1 cut(s) 779
TaqI TCGA 4 cut(s) 369, 487, 584, 1045
TaqII GACCGA 1 cut(s) 693
TasI AATT 8 cut(s) 77, 200, 500, 843, 948, 969, 1040, 1127
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 3 cut(s) 83, 581, 700
Tru1I TTAA 5 cut(s) 333, 480, 750, 866, 1038
Tru9I TTAA 5 cut(s) 333, 480, 750, 866, 1038
TscAI CASTG 1 cut(s) 1105
TseFI GTSAC 2 cut(s) 175, 362
TseI GCWGC 1 cut(s) 705
Tsp45I GTSAC 2 cut(s) 175, 362
TspDTI ATGAA 8 cut(s) 66, 252, 402, 699, 713, 1215, 1235, 1247
TspRI CASTG 1 cut(s) 1105
VpaK11BI GGWCC 3 cut(s) 932, 1058, 1219
XapI RAATTY 3 cut(s) 77, 1040, 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 1079
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 154
XspI CTAG 2 cut(s) 927, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.