Rmu_co8464925.1_g000001

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8464925.1
OG0000417
Physical Location & Seq
Reverse (-)
2 .. 1119
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8464925.1_g000001.1.cds

Sequence Viewer

Length: 1118 bp
atgtctgcaaatcgtaaaagtggtagagatcatacagttattgatattatcgatgaccgcgagaaaagcaagaaatgcatcttcagagttcctaacgtgctccggagacaaaacccagaagcatatacacctgacgttgtttctattggaccctttcatcattatcgacaaaagcgaggaaaggaggacggtaatggaggcaaagaaggcaaatgcgaggaagatttccaactcatggaacgagtgaaaaactgctatttgaatgaaattctcgcagatatgaagaatattactctcgaagagttgactgcaaaagttattgagctctcagatcaaaagaatgaaggtgcctttgaggaacgagcccgcaatttttatgcagaaccacttgatcatatttcttccaaagacttcattgagatgatgatagttgacggttgcttcctagttcaactgtttcggaagtttaacgatccgaaactcagggcctttgatgacccggtgttcaacatggactgtatgtttcatttcctatgccacgacattttgctcctagagaatcaactaccttggtttgttatccacattttgtatggccatattatccacagttcgcatggccataccccagatataaaccatggtgaagcttccctctctattctcatcctgaaagcgctcagcatactaccctcactgaagcatagttgcgcaacctataaaacgcatctcaagaaaaacaagtgtcattgtgatgctcatgttctgcacatacttgatctggtaagagcttccatagttattccattaacgaccatagaagagagagcgcataaagcaactgataaagaaggtacatccagccctgaagaacatcaagtgcacactgggaacaaagacaagagagacaataaagctgtccatgaagacccagatcaacaccaaattcgtaccgcaaccgcactgtcaaaggcagacattaaattcgaaaaagtcgaaagggagagcataatggacattcgattcaacaagggtggctggttcaggaatgggattcttgagattccacagctaaacgttggaatgtcatcggaaacattattcaggaacctcattgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

373

Amino Acids

42.86

Weight (kDa)

6.52

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 712
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 4 cut(s) 58, 367, 954, 960
AclI AACGTT 1 cut(s) 1077
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 2 cut(s) 595, 619
AcsI RAATTY 3 cut(s) 267, 945, 983
AcuI CTGAAG 3 cut(s) 67, 719, 888
AfaI GTAC 2 cut(s) 856, 952
AfeI AGCGCT 1 cut(s) 678
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 4 cut(s) 262, 452, 508, 1027
AluBI AGCT 5 cut(s) 325, 650, 791, 917, 1072
AluI AGCT 5 cut(s) 325, 650, 791, 917, 1072
Alw21I GWGCWC 3 cut(s) 102, 327, 885
Alw26I GTCTC 2 cut(s) 100, 900
Alw44I GTGCAC 1 cut(s) 881
AlwI GGATC 1 cut(s) 467
Aor13HI TCCGGA 1 cut(s) 102
Aor51HI AGCGCT 1 cut(s) 678
AoxI GGCC 3 cut(s) 486, 595, 619
ApaLI GTGCAC 1 cut(s) 881
ApoI RAATTY 3 cut(s) 267, 945, 983
ArsI GACNNNNNNTTYG 2 cut(s) 968, 1000
AspLEI GCGC 3 cut(s) 679, 713, 832
AspS9I GGNCC 2 cut(s) 149, 486
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 656
AsuII TTCGAA 1 cut(s) 987
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 885
BalI TGGCCA 2 cut(s) 597, 621
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 2 cut(s) 327, 367
BbsI GAAGAC 1 cut(s) 933
Bbv12I GWGCWC 3 cut(s) 102, 327, 885
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 100, 900
BfaI CTAG 2 cut(s) 446, 554
BfoI RGCGCY 1 cut(s) 680
BlpI GCTNAGC 1 cut(s) 680
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 149, 486
BmiI GGNNCC 3 cut(s) 151, 349, 1109
BmrFI CCNGG 1 cut(s) 500
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 3 cut(s) 87, 736, 745
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 1 cut(s) 933
Bpu1102I GCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 716, 1079
BpuMI CCSGG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 569, 640
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 892
Bse3DI GCAATG 1 cut(s) 1113
BseAI TCCGGA 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 569, 640
BseGI GGATG 2 cut(s) 666, 857
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 3 cut(s) 342, 496, 694
BseNI ACTGG 1 cut(s) 892
BseSI GKGCMC 1 cut(s) 885
BsgI GTGCAG 1 cut(s) 752
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 488, 597, 621
BshNI GGYRCC 1 cut(s) 347
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 3 cut(s) 102, 327, 885
BsiSI CCGG 2 cut(s) 103, 500
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 100, 900
BsnI GGCC 3 cut(s) 488, 597, 621
Bsp119I TTCGAA 1 cut(s) 987
Bsp1286I GDGCHC 4 cut(s) 102, 327, 367, 885
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 6 cut(s) 28, 331, 391, 472, 778, 934
Bsp1720I GCTNAGC 1 cut(s) 680
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 4 cut(s) 58, 367, 954, 960
BspANI GGCC 3 cut(s) 488, 597, 621
BspCNI CTCAG 3 cut(s) 341, 495, 693
BspDI ATCGAT 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 102
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 151, 349, 1109
BspPI GGATC 1 cut(s) 467
BspT104I TTCGAA 1 cut(s) 987
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 1113
BsrI ACTGG 1 cut(s) 892
BssECI CCNNGG 2 cut(s) 569, 640
BssMI GATC 6 cut(s) 28, 331, 391, 472, 778, 934
BssT1I CCWWGG 2 cut(s) 569, 640
Bst4CI ACNGT 7 cut(s) 37, 191, 437, 456, 518, 611, 966
Bst6I CTCTTC 2 cut(s) 294, 816
BstAPI GCANNNNNTGC 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 987
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 3 cut(s) 328, 482, 680
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 666, 857
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 680
BstHHI GCGC 3 cut(s) 679, 713, 832
BstKTI GATC 6 cut(s) 31, 334, 394, 475, 781, 937
BstMAI GTCTC 2 cut(s) 100, 900
BstMBI GATC 6 cut(s) 28, 331, 391, 472, 778, 934
BstMWI GCNNNNNNNGC 4 cut(s) 66, 75, 207, 836
BstSCI CCNGG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 885
BstUI CGCG 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 933
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 3 cut(s) 488, 597, 621
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 2 cut(s) 666, 857
BtsIMutI CAGTG 3 cut(s) 695, 885, 962
Cac8I GCNNGC 1 cut(s) 367
CfoI GCGC 3 cut(s) 679, 713, 832
Cfr13I GGNCC 2 cut(s) 149, 486
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 2 cut(s) 855, 951
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 6 cut(s) 235, 511, 617, 641, 761, 923
CviQI GTAC 2 cut(s) 855, 951
DdeI CTNAG 3 cut(s) 328, 482, 680
DpnI GATC 6 cut(s) 30, 333, 393, 474, 780, 936
DpnII GATC 6 cut(s) 28, 331, 391, 472, 778, 934
EaeI YGGCCR 2 cut(s) 595, 619
Eam1104I CTCTTC 2 cut(s) 294, 816
EarI CTCTTC 2 cut(s) 294, 816
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 2 cut(s) 569, 640
Eco24I GRGCYC 2 cut(s) 327, 367
Eco47I GGWCC 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 3 cut(s) 67, 719, 888
EcoICRI GAGCTC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 569, 640
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 2 cut(s) 327, 367
ErhI CCWWGG 2 cut(s) 569, 640
FaeI CATG 6 cut(s) 238, 514, 620, 644, 764, 926
FatI CATG 6 cut(s) 234, 510, 616, 640, 760, 922
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 1 cut(s) 391
FokI GGATG 2 cut(s) 653, 844
FriOI GRGCYC 2 cut(s) 327, 367
FspBI CTAG 2 cut(s) 446, 554
FspI TGCGCA 1 cut(s) 712
GlaI GCGC 3 cut(s) 678, 712, 831
HaeII RGCGCY 1 cut(s) 680
HaeIII GGCC 3 cut(s) 488, 597, 621
HapII CCGG 2 cut(s) 103, 500
HhaI GCGC 3 cut(s) 679, 713, 832
Hin1II CATG 6 cut(s) 238, 514, 620, 644, 764, 926
Hin6I GCGC 3 cut(s) 677, 711, 830
HinP1I GCGC 3 cut(s) 677, 711, 830
HincII GTYRAC 2 cut(s) 306, 433
HindII GTYRAC 2 cut(s) 306, 433
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 4 cut(s) 559, 1023, 1054, 1063
HpaII CCGG 2 cut(s) 103, 500
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 3 cut(s) 306, 433, 883
Hpy188I TCNGA 5 cut(s) 86, 331, 462, 477, 1093
Hpy188III TCNNGA 7 cut(s) 103, 296, 670, 733, 1045, 1058, 1105
Hpy8I GTNNAC 3 cut(s) 306, 433, 883
HpyAV CCTTC 3 cut(s) 200, 338, 845
HpyCH4III ACNGT 7 cut(s) 37, 191, 437, 456, 518, 611, 966
HpyCH4IV ACGT 3 cut(s) 96, 135, 1077
HpyCH4V TGCA 6 cut(s) 8, 78, 311, 380, 769, 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 75, 207, 836
HpyF3I CTNAG 3 cut(s) 328, 482, 680
HpySE526I ACGT 3 cut(s) 96, 135, 1077
Hsp92II CATG 6 cut(s) 238, 514, 620, 644, 764, 926
HspAI GCGC 3 cut(s) 677, 711, 830
Kpn2I TCCGGA 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 6 cut(s) 28, 331, 391, 472, 778, 934
LmnI GCTCC 2 cut(s) 105, 555
LweI GCATC 3 cut(s) 87, 736, 745
MaeI CTAG 2 cut(s) 446, 554
MaeII ACGT 3 cut(s) 96, 135, 1077
MalI GATC 6 cut(s) 30, 333, 393, 474, 780, 936
MboI GATC 6 cut(s) 28, 331, 391, 472, 778, 934
MboII GAAGA 8 cut(s) 73, 233, 295, 311, 393, 833, 881, 938
MhlI GDGCHC 4 cut(s) 102, 327, 367, 885
MlsI TGGCCA 2 cut(s) 597, 621
MluCI AATT 4 cut(s) 267, 370, 945, 983
MluNI TGGCCA 2 cut(s) 597, 621
MmeI TCCRAC 2 cut(s) 253, 1060
MnlI CCTC 7 cut(s) 170, 178, 191, 211, 349, 665, 703
Mox20I TGGCCA 2 cut(s) 597, 621
Mph1103I ATGCAT 1 cut(s) 80
MroI TCCGGA 1 cut(s) 102
MscI TGGCCA 2 cut(s) 597, 621
MseI TTAA 3 cut(s) 468, 809, 981
MslI CAYNNNNRTG 2 cut(s) 419, 753
Msp20I TGGCCA 2 cut(s) 597, 621
MspI CCGG 2 cut(s) 103, 500
MspR9I CCNGG 1 cut(s) 500
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 4 cut(s) 66, 75, 207, 836
NciI CCSGG 1 cut(s) 500
NcoI CCATGG 1 cut(s) 640
NdeII GATC 6 cut(s) 28, 331, 391, 472, 778, 934
NlaIII CATG 6 cut(s) 238, 514, 620, 644, 764, 926
NlaIV GGNNCC 3 cut(s) 151, 349, 1109
NsbI TGCGCA 1 cut(s) 712
NsiI ATGCAT 1 cut(s) 80
NspV TTCGAA 1 cut(s) 987
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 172, 993
PfeI GAWTC 4 cut(s) 559, 1023, 1054, 1063
PflMI CCANNNNNTGG 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 1077
PspN4I GGNNCC 3 cut(s) 151, 349, 1109
PspPI GGNCC 2 cut(s) 149, 486
RsaI GTAC 2 cut(s) 856, 952
RsaNI GTAC 2 cut(s) 855, 951
RseI CAYNNNNRTG 2 cut(s) 419, 753
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 3 cut(s) 468, 809, 981
Sau3AI GATC 6 cut(s) 28, 331, 391, 472, 778, 934
Sau96I GGNCC 2 cut(s) 149, 486
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 4 cut(s) 102, 327, 367, 885
SfaNI GCATC 3 cut(s) 87, 736, 745
SfuI TTCGAA 1 cut(s) 987
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 419, 753
SmlI CTYRAG 2 cut(s) 731, 1058
SmoI CTYRAG 2 cut(s) 731, 1058
Sse9I AATT 4 cut(s) 267, 370, 945, 983
SsiI CCGC 4 cut(s) 58, 367, 954, 960
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 446, 554
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 2 cut(s) 569, 640
TaaI ACNGT 7 cut(s) 37, 191, 437, 456, 518, 611, 966
TaiI ACGT 3 cut(s) 99, 138, 1080
TaqI TCGA 6 cut(s) 51, 166, 297, 987, 996, 1021
TasI AATT 4 cut(s) 267, 370, 945, 983
TfiI GAWTC 4 cut(s) 559, 1023, 1054, 1063
Tru1I TTAA 3 cut(s) 468, 809, 981
Tru9I TTAA 3 cut(s) 468, 809, 981
TscAI CASTG 3 cut(s) 702, 892, 969
TspDTI ATGAA 7 cut(s) 146, 279, 296, 357, 403, 515, 939
TspRI CASTG 3 cut(s) 702, 892, 969
Van91I CCANNNNNTGG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 881
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 3 cut(s) 267, 945, 983
XcmI CCANNNNNNNNNTGG 2 cut(s) 590, 614
XspI CTAG 2 cut(s) 446, 554
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.