Rroxscaffold_5G00336700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000417
Physical Location & Seq
Reverse (-)
4533050 .. 4534510
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336700.1

Sequence Viewer

Length: 1461 bp
ATGTCTACAAATCATGGGAGTAATGATCATACAGTTATCAATATTGGCAAGAAATGCAAGAAATGCATCTTCAGAGTTCCTAACGTGCTCTGCAGACAAAATCCAGAAGCATATACACCTGACGTTGTTTCAATCGGACCTTTTCATCATTATCCAGAAGAGCGAGCCAAGGAGGAAGGTAAAGGAGGCAAAAAACGCAATCGCGAAAAATATTTCCAACTCATGGAAGAAGTGAAAAAGAGCTATTTGAATGAAATTCTCGCAGGTACGAAGATTAAAAATTTGGAAGAGTTGACTGCAGAAGTCATTAAGCTCTCAGATCAAAAGAATGAAGGCGAATTTGAGCAACGTGCGCTCGAATTTGACCAACGCGCGCGCGAATTTTATGCCGAACCACTTCATCGAGATCATATTCCCCCTAAAGACTTCATCGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTAACGATCCGAAACTCAGGGCCTTTGATGACCCGGTGTTCAACATGGACTGTATGTTTCATTTCATATGCCATGACATTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTATCCACAGTTTGTATAGCCTTATCATTGAAACATCCCCTAATCAAGCCAACCTCTCTTTTCTCATCCTTGAAGCCTTCAGCATGCTACCATCACTGAAGCAAGGTTGCTCATCTTATAGTAAGCATCTCCGCCAAAACAATTGTCATTTTGCTACTGATTATCTGCACGTACTTGATCTGATAAGAAGTTCCATAGTAGTTCCATTAAGGACCATAAAAGAGAGAGCGCATAAAGCAGCTGGAAATGAATCTATGTCCAACCCGGGAGAACATGAAGTTGTTCATGAAGCTATCATTGACCCAGATCTACATCAAATTCGTACCGCAAGCGAACTCTCAAAGGCAGACATTAAATTCAAAAGCGTCGAAAAGGATAGCATAATGGACATCCAGTTCAAAGAGGGTGGGTGGTTCAGGAATGGGATTCTTGAGATTCCACCGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCCATTGAGCAATGCTACCATGGTTATTCAAACGAGATAACATCTTATGCTATCTTTATGGATAACCTCATCTCTTCAAATGAAGATATGGAATTACTTTGCAAGAAAAAAGTAATAGGTAACTTGATGAGTGATGAGGATGGCTGTAAGTTTTTCAGCAACCTTTACAAGGACATCCCGCACAAGAAGTTCTACTATGTTGAGCTGTGTAAACAAGTGAATGCTCGTTACAATTTGACATGGTATACGTGGTTGGCTTTACTCAAGTTTGAAAAGTTTTCTAACCCCTGGAAGGTTTTGGCTTTCGTGATAGCTATTATCGTTTTGACTCTCACCGCGTGGAGTCAGACAAACCACATTCGGGTTAACTGGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

486

Amino Acids

56.47

Weight (kDa)

6.58

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 23 - 471 8.9e-98 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 254
AccB7I CCANNNNNTGG 1 cut(s) 223
AccI GTMKAC 2 cut(s) 5, 1325
AccII CGCG 6 cut(s) 204, 372, 374, 376, 378, 1418
AciI CCGC 5 cut(s) 724, 918, 1034, 1259, 1416
AclI AACGTT 1 cut(s) 1041
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 7 cut(s) 255, 280, 338, 359, 380, 909, 947
AcuI CTGAAG 3 cut(s) 55, 655, 710
AdeI CACNNNGTG 1 cut(s) 1419
AfaI GTAC 3 cut(s) 268, 765, 916
AfiI CCNNNNNNNGG 4 cut(s) 223, 1249, 1372, 1441
AjnI CCWGG 1 cut(s) 1367
AloI GAACNNNNNNTCC 2 cut(s) 971, 1003
AluBI AGCT 6 cut(s) 243, 313, 833, 884, 1285, 1394
AluI AGCT 6 cut(s) 243, 313, 833, 884, 1285, 1394
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 856
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 1 cut(s) 830
ApoI RAATTY 7 cut(s) 255, 280, 338, 359, 380, 909, 947
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
Asp700I GAANNNNTTC 2 cut(s) 396, 873
AspLEI GCGC 5 cut(s) 355, 374, 376, 378, 823
AspS9I GGNCC 3 cut(s) 137, 501, 804
AsuC2I CCSGG 3 cut(s) 515, 857, 858
AsuHPI GGTGA 1 cut(s) 1405
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 2 cut(s) 137, 804
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 842
BccI CCATC 2 cut(s) 691, 1214
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 1 cut(s) 1369
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 3 cut(s) 515, 857, 858
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 2 cut(s) 91, 297
BfuAI ACCTGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 898
BisI GCNGC 1 cut(s) 831
BlsI GCNGC 1 cut(s) 832
Bme1390I CCNGG 4 cut(s) 515, 857, 858, 1369
Bme18I GGWCC 2 cut(s) 137, 804
BmeT110I CYCGRG 1 cut(s) 856
BmgT120I GGNCC 3 cut(s) 137, 501, 804
BmiI GGNNCC 1 cut(s) 1073
BmrFI CCNGG 4 cut(s) 515, 857, 858, 1369
BmsI GCATC 2 cut(s) 75, 727
BpuEI CTTGAG 2 cut(s) 1043, 1328
BpuMI CCSGG 3 cut(s) 515, 857, 858
BsaAI YACGTR 2 cut(s) 763, 1329
BsaBI GATNNNNATC 1 cut(s) 903
BsaJI CCNNGG 5 cut(s) 168, 584, 856, 1099, 1367
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 1249, 1372, 1441
Bse1I ACTGG 2 cut(s) 985, 1454
Bse3DI GCAATG 2 cut(s) 1077, 1097
Bse8I GATNNNNATC 1 cut(s) 903
BseBI CCWGG 1 cut(s) 1369
BseDI CCNNGG 5 cut(s) 168, 584, 856, 1099, 1367
BseGI GGATG 5 cut(s) 626, 657, 981, 1225, 1254
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 4 cut(s) 223, 1249, 1372, 1441
BseMI GCAATG 2 cut(s) 1077, 1097
BseMII CTCAG 2 cut(s) 330, 511
BseNI ACTGG 2 cut(s) 985, 1454
BsePI GCGCGC 2 cut(s) 372, 374
BseXI GCAGC 1 cut(s) 842
BsgI GTGCAG 1 cut(s) 743
Bsh1236I CGCG 6 cut(s) 204, 372, 374, 376, 378, 1418
BshFI GGCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 2 cut(s) 515, 857
BslI CCNNNNNNNGG 4 cut(s) 223, 1249, 1372, 1441
BsmI GAATGC 1 cut(s) 1306
BsnI GGCC 1 cut(s) 503
BsoBI CYCGRG 1 cut(s) 856
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 6 cut(s) 25, 319, 406, 487, 769, 898
Bsp19I CCATGG 1 cut(s) 1099
Bsp68I TCGCGA 1 cut(s) 204
BspACI CCGC 5 cut(s) 724, 918, 1034, 1259, 1416
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 2 cut(s) 329, 510
BspFNI CGCG 6 cut(s) 204, 372, 374, 376, 378, 1418
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 1 cut(s) 1073
BspMAI CTGCAG 2 cut(s) 95, 301
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 153
BsrDI GCAATG 2 cut(s) 1077, 1097
BsrI ACTGG 2 cut(s) 985, 1454
BssECI CCNNGG 5 cut(s) 168, 584, 856, 1099, 1367
BssHII GCGCGC 2 cut(s) 372, 374
BssMI GATC 6 cut(s) 25, 319, 406, 487, 769, 898
BssNAI GTATAC 1 cut(s) 1326
BssT1I CCWWGG 3 cut(s) 168, 584, 1099
Bst1107I GTATAC 1 cut(s) 1326
Bst2UI CCWGG 1 cut(s) 1369
Bst4CI ACNGT 5 cut(s) 34, 452, 471, 533, 602
Bst6I CTCTTC 3 cut(s) 153, 282, 1159
BstAPI GCANNNNNTGC 2 cut(s) 54, 63
BstBAI YACGTR 2 cut(s) 763, 1329
BstC8I GCNNGC 5 cut(s) 165, 374, 376, 677, 922
BstDEI CTNAG 2 cut(s) 316, 497
BstDSI CCRYGG 1 cut(s) 1099
BstENI CCTNNNNNAGG 1 cut(s) 1247
BstF5I GGATG 5 cut(s) 626, 657, 981, 1225, 1254
BstFNI CGCG 6 cut(s) 204, 372, 374, 376, 378, 1418
BstHHI GCGC 5 cut(s) 355, 374, 376, 378, 823
BstKTI GATC 6 cut(s) 28, 322, 409, 490, 772, 901
BstMBI GATC 6 cut(s) 25, 319, 406, 487, 769, 898
BstMWI GCNNNNNNNGC 5 cut(s) 54, 63, 195, 352, 827
BstNI CCWGG 1 cut(s) 1369
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 4 cut(s) 513, 855, 856, 1367
BstSFI CTRYAG 2 cut(s) 91, 297
BstUI CGCG 6 cut(s) 204, 372, 374, 376, 378, 1418
BstV1I GCAGC 1 cut(s) 842
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
BstZ17I GTATAC 1 cut(s) 1326
BsuRI GGCC 1 cut(s) 503
BtgI CCRYGG 1 cut(s) 1099
BtsCI GGATG 5 cut(s) 626, 657, 981, 1225, 1254
BtsIMutI CAGTG 1 cut(s) 686
BtuMI TCGCGA 1 cut(s) 204
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 5 cut(s) 165, 374, 376, 677, 922
CciI TCATGA 1 cut(s) 877
CfoI GCGC 5 cut(s) 355, 374, 376, 378, 823
Cfr13I GGNCC 3 cut(s) 137, 501, 804
Cfr9I CCCGGG 1 cut(s) 856
CseI GACGC 1 cut(s) 946
Csp6I GTAC 3 cut(s) 267, 764, 915
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviAII CATG 9 cut(s) 14, 223, 526, 554, 676, 866, 878, 1100, 1320
CviQI GTAC 3 cut(s) 267, 764, 915
DdeI CTNAG 2 cut(s) 316, 497
DpnI GATC 6 cut(s) 27, 321, 408, 489, 771, 900
DpnII GATC 6 cut(s) 25, 319, 406, 487, 769, 898
DraIII CACNNNGTG 1 cut(s) 1419
Eam1104I CTCTTC 3 cut(s) 153, 282, 1159
EarI CTCTTC 3 cut(s) 153, 282, 1159
EciI GGCGGA 1 cut(s) 713
Eco130I CCWWGG 3 cut(s) 168, 584, 1099
Eco47I GGWCC 2 cut(s) 137, 804
Eco57I CTGAAG 3 cut(s) 55, 655, 710
Eco88I CYCGRG 1 cut(s) 856
EcoNI CCTNNNNNAGG 1 cut(s) 1247
EcoO109I RGGNCCY 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 1367
EcoT14I CCWWGG 3 cut(s) 168, 584, 1099
EcoT22I ATGCAT 1 cut(s) 68
ErhI CCWWGG 3 cut(s) 168, 584, 1099
FaeI CATG 9 cut(s) 17, 226, 529, 557, 679, 869, 881, 1103, 1323
FatI CATG 9 cut(s) 13, 222, 525, 553, 675, 865, 877, 1099, 1319
FauI CCCGC 1 cut(s) 1266
FauNDI CATATG 1 cut(s) 548
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 2 cut(s) 5, 1325
Fnu4HI GCNGC 1 cut(s) 831
FokI GGATG 5 cut(s) 613, 644, 968, 1232, 1241
Fsp4HI GCNGC 1 cut(s) 831
FspBI CTAG 1 cut(s) 569
GlaI GCGC 5 cut(s) 354, 373, 375, 377, 822
GluI GCNGC 1 cut(s) 831
HaeIII GGCC 1 cut(s) 503
HapII CCGG 2 cut(s) 515, 857
HgaI GACGC 1 cut(s) 946
HhaI GCGC 5 cut(s) 355, 374, 376, 378, 823
Hin1II CATG 9 cut(s) 17, 226, 529, 557, 679, 869, 881, 1103, 1323
Hin6I GCGC 5 cut(s) 353, 372, 374, 376, 821
HinP1I GCGC 5 cut(s) 353, 372, 374, 376, 821
HincII GTYRAC 3 cut(s) 294, 448, 1447
HindII GTYRAC 3 cut(s) 294, 448, 1447
HinfI GANTC 5 cut(s) 842, 1018, 1027, 1408, 1423
HpaI GTTAAC 1 cut(s) 1447
HpaII CCGG 2 cut(s) 515, 857
HphI GGTGA 1 cut(s) 1405
Hpy166II GTNNAC 6 cut(s) 6, 294, 448, 1292, 1326, 1447
Hpy188I TCNGA 8 cut(s) 74, 137, 319, 477, 492, 774, 1057, 1428
Hpy8I GTNNAC 6 cut(s) 6, 294, 448, 1292, 1326, 1447
Hpy99I CGWCG 1 cut(s) 962
HpyAV CCTTC 4 cut(s) 170, 326, 679, 1366
HpyCH4III ACNGT 5 cut(s) 34, 452, 471, 533, 602
HpyCH4IV ACGT 6 cut(s) 84, 123, 349, 762, 1041, 1328
HpyCH4V TGCA 6 cut(s) 57, 66, 93, 299, 760, 1182
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 63, 195, 352, 827
HpyF3I CTNAG 2 cut(s) 316, 497
HpySE526I ACGT 6 cut(s) 84, 123, 349, 762, 1041, 1328
Hsp92II CATG 9 cut(s) 17, 226, 529, 557, 679, 869, 881, 1103, 1323
HspAI GCGC 5 cut(s) 353, 372, 374, 376, 821
Ksp22I TGATCA 1 cut(s) 25
KspAI GTTAAC 1 cut(s) 1447
Kzo9I GATC 6 cut(s) 25, 319, 406, 487, 769, 898
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 570
Lsp1109I GCAGC 1 cut(s) 842
LweI GCATC 2 cut(s) 75, 727
MaeI CTAG 1 cut(s) 569
MaeII ACGT 6 cut(s) 84, 123, 349, 762, 1041, 1328
MaeIII GTNAC 3 cut(s) 482, 1199, 1307
MalI GATC 6 cut(s) 27, 321, 408, 489, 771, 900
MauBI CGCGCGCG 2 cut(s) 372, 374
MboI GATC 6 cut(s) 25, 319, 406, 487, 769, 898
MboII GAAGA 7 cut(s) 61, 170, 239, 283, 299, 1146, 1175
MfeI CAATTG 1 cut(s) 733
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 1 cut(s) 90
MlyI GAGTC 2 cut(s) 1402, 1432
MmeI TCCRAC 3 cut(s) 241, 876, 1024
MnlI CCTC 7 cut(s) 166, 179, 656, 988, 1085, 1157, 1210
Mph1103I ATGCAT 1 cut(s) 68
MroXI GAANNNNTTC 2 cut(s) 396, 873
MseI TTAA 5 cut(s) 276, 309, 800, 945, 1446
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 2 cut(s) 515, 857
MspR9I CCNGG 4 cut(s) 515, 857, 858, 1369
MunI CAATTG 1 cut(s) 733
Mva1269I GAATGC 1 cut(s) 1306
MvaI CCWGG 1 cut(s) 1369
MvnI CGCG 6 cut(s) 204, 372, 374, 376, 378, 1418
MwoI GCNNNNNNNGC 5 cut(s) 54, 63, 195, 352, 827
NciI CCSGG 3 cut(s) 515, 857, 858
NcoI CCATGG 1 cut(s) 1099
NdeI CATATG 1 cut(s) 548
NdeII GATC 6 cut(s) 25, 319, 406, 487, 769, 898
NlaIII CATG 9 cut(s) 17, 226, 529, 557, 679, 869, 881, 1103, 1323
NlaIV GGNNCC 1 cut(s) 1073
NruI TCGCGA 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 679
PaeI GCATGC 1 cut(s) 679
PagI TCATGA 1 cut(s) 877
PauI GCGCGC 2 cut(s) 372, 374
PciSI GCTCTTC 1 cut(s) 153
PctI GAATGC 1 cut(s) 1306
PdmI GAANNNNTTC 2 cut(s) 396, 873
PfeI GAWTC 3 cut(s) 842, 1018, 1027
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 1 cut(s) 832
PleI GAGTC 2 cut(s) 1402, 1431
PpsI GAGTC 2 cut(s) 1402, 1431
Ppu21I YACGTR 2 cut(s) 763, 1329
Psp1406I AACGTT 1 cut(s) 1041
Psp6I CCWGG 1 cut(s) 1367
PspGI CCWGG 1 cut(s) 1367
PspN4I GGNNCC 1 cut(s) 1073
PspPI GGNCC 3 cut(s) 137, 501, 804
PstI CTGCAG 2 cut(s) 95, 301
PsuI RGATCY 1 cut(s) 898
PteI GCGCGC 2 cut(s) 372, 374
PvuII CAGCTG 1 cut(s) 833
RruI TCGCGA 1 cut(s) 204
RsaI GTAC 3 cut(s) 268, 765, 916
RsaNI GTAC 3 cut(s) 267, 764, 915
RseI CAYNNNNRTG 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 5 cut(s) 276, 309, 800, 945, 1446
SatI GCNGC 1 cut(s) 831
Sau3AI GATC 6 cut(s) 25, 319, 406, 487, 769, 898
Sau96I GGNCC 3 cut(s) 137, 501, 804
SchI GAGTC 2 cut(s) 1402, 1432
ScrFI CCNGG 4 cut(s) 515, 857, 858, 1369
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 2 cut(s) 75, 727
SfcI CTRYAG 2 cut(s) 91, 297
SinI GGWCC 2 cut(s) 137, 804
SmaI CCCGGG 1 cut(s) 858
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 1022, 1343
SmoI CTYRAG 2 cut(s) 1022, 1343
SphI GCATGC 1 cut(s) 679
SsiI CCGC 5 cut(s) 724, 918, 1034, 1259, 1416
SspI AATATT 2 cut(s) 43, 212
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 4 cut(s) 513, 855, 856, 1367
StyI CCWWGG 3 cut(s) 168, 584, 1099
TaaI ACNGT 5 cut(s) 34, 452, 471, 533, 602
TaiI ACGT 6 cut(s) 87, 126, 352, 765, 1044, 1331
TaqI TCGA 4 cut(s) 357, 403, 432, 960
TfiI GAWTC 3 cut(s) 842, 1018, 1027
Tru1I TTAA 5 cut(s) 276, 309, 800, 945, 1446
Tru9I TTAA 5 cut(s) 276, 309, 800, 945, 1446
TscAI CASTG 1 cut(s) 693
TseI GCWGC 1 cut(s) 830
TspMI CCCGGG 1 cut(s) 856
TspRI CASTG 1 cut(s) 693
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 2 cut(s) 137, 804
XagI CCTNNNNNAGG 1 cut(s) 1247
XapI RAATTY 7 cut(s) 255, 280, 338, 359, 380, 909, 947
XceI RCATGY 1 cut(s) 679
XmaI CCCGGG 1 cut(s) 856
XmiI GTMKAC 2 cut(s) 5, 1325
XmnI GAANNNNTTC 2 cut(s) 396, 873
XspI CTAG 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.