Rorug03G0331800

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000417
Physical Location & Seq
Forward (+)
38505690 .. 38507550
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0331800.1

Sequence Viewer

Length: 567 bp
ATGCAATCACTAGATATATCTCGACCAAAATTTGGAGGTTATAAGAGGGAGTGGGTGCCATTTTGGGGCAAATCTAGACACGTCCGAATCTTCTCAATATATCTTCATTTATCATACAACAGAAATGACACCAGCGTCGTCAGTCCCACCCTCGGCTTCAACATCAAGACTCTCACTTACCAGAAGTATACACTTAACATATGGGATGTGGGGGGTCAAAAAACAATACGATCTTATCGGAGAAACTATTTTGAACAAACTGATGGTCTCGTATGGGTAGTTGACAGTTCTGATCTTAGAAGATTAGATGACTGCAAAATGGAGCTTGATAATCTTTTGAGGGAAGAGAGGCTATCAGGATCGTCCTTACTGATACTAGCAAATAAGCAGGACATAAAAGGTACCCTTACTCCACAAGAAATTGCCAAGGTTTTGAACTTGGAGGCTATGAATAAAACTCGGCACTGGAATATTGTTGGCTGCAGTGCATACACTGGTGAGGGGCTGCTTCAGGGATTTGATTGGTTGGTCCAAGACATTGCCTCTCGGATCTATGTGCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

188

Amino Acids

21.84

Weight (kDa)

9.04

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 39 - 180 1.5e-50 ADP-ribosylation factor family
Ras PF00071 48 - 180 6.6e-10 Ras family
Roc PF08477 50 - 131 7e-08 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AasI GACNNNNNNGTC 1 cut(s) 134
Acc65I GGTACC 1 cut(s) 401
AccB1I GGYRCC 2 cut(s) 55, 401
AccB7I CCANNNNNTGG 1 cut(s) 32
AccI GTMKAC 1 cut(s) 188
AclWI GGATC 2 cut(s) 367, 557
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 3 cut(s) 32, 65, 152
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 3 cut(s) 160, 254, 436
AjiI CACGTC 1 cut(s) 82
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 2 cut(s) 367, 557
ApeKI GCWGC 2 cut(s) 480, 505
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
Asp718I GGTACC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 509
AvaII GGWCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 55, 401
BbvI GCAGC 2 cut(s) 467, 492
BccI CCATC 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 3 cut(s) 11, 75, 377
BfmI CTRYAG 1 cut(s) 481
BisI GCNGC 2 cut(s) 481, 506
BlsI GCNGC 2 cut(s) 482, 507
Bme18I GGWCC 1 cut(s) 529
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 2 cut(s) 57, 403
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 151, 426
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 65, 152
Bse1I ACTGG 2 cut(s) 470, 499
Bse3DI GCAATG 1 cut(s) 537
BseDI CCNNGG 2 cut(s) 151, 426
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 32, 65, 152
BseMI GCAATG 1 cut(s) 537
BseNI ACTGG 2 cut(s) 470, 499
BseXI GCAGC 2 cut(s) 467, 492
BshNI GGYRCC 2 cut(s) 55, 401
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 3 cut(s) 32, 65, 152
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 272
Bsp143I GATC 4 cut(s) 230, 292, 359, 549
BspLI GGNNCC 2 cut(s) 57, 403
BspMAI CTGCAG 1 cut(s) 485
BspPI GGATC 2 cut(s) 367, 557
BspT107I GGYRCC 2 cut(s) 55, 401
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 2 cut(s) 470, 499
BssECI CCNNGG 2 cut(s) 151, 426
BssMI GATC 4 cut(s) 230, 292, 359, 549
BssNAI GTATAC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 426
Bst1107I GTATAC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 4 cut(s) 233, 295, 362, 552
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 4 cut(s) 230, 292, 359, 549
BstSFI CTRYAG 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 467, 492
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BstZ17I GTATAC 1 cut(s) 189
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 3 cut(s) 463, 490, 492
Cfr13I GGNCC 1 cut(s) 529
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 402
CviJI RGCY 6 cut(s) 156, 325, 352, 446, 480, 505
CviKI_1 RGCY 6 cut(s) 156, 325, 352, 446, 480, 505
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 296
DpnI GATC 4 cut(s) 232, 294, 361, 551
DpnII GATC 4 cut(s) 230, 292, 359, 549
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 426
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 200
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 481, 506
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 481, 506
FspBI CTAG 3 cut(s) 11, 75, 377
GluI GCNGC 2 cut(s) 481, 506
HgaI GACGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 87, 169
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 189, 283
Hpy188I TCNGA 4 cut(s) 86, 240, 292, 549
Hpy188III TCNNGA 4 cut(s) 21, 75, 166, 357
Hpy8I GTNNAC 2 cut(s) 189, 283
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 4 cut(s) 4, 315, 483, 488
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 81
KpnI GGTACC 1 cut(s) 405
Kzo9I GATC 4 cut(s) 230, 292, 359, 549
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 7 cut(s) 145, 194, 342, 374, 451, 480, 497
Lsp1109I GCAGC 2 cut(s) 467, 492
MaeI CTAG 3 cut(s) 11, 75, 377
MaeII ACGT 1 cut(s) 81
MalI GATC 4 cut(s) 232, 294, 361, 551
MboI GATC 4 cut(s) 230, 292, 359, 549
MboII GAAGA 4 cut(s) 82, 95, 312, 356
MflI RGATCY 1 cut(s) 549
MluCI AATT 2 cut(s) 29, 420
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 8 cut(s) 29, 39, 161, 333, 342, 436, 493, 553
MseI TTAA 1 cut(s) 195
NdeI CATATG 1 cut(s) 200
NdeII GATC 4 cut(s) 230, 292, 359, 549
NlaIV GGNNCC 2 cut(s) 57, 403
NmeAIII GCCGAG 2 cut(s) 132, 439
PfeI GAWTC 1 cut(s) 87
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 482, 507
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 57, 403
PspPI GGNCC 1 cut(s) 529
PstI CTGCAG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 481, 506
Sau3AI GATC 4 cut(s) 230, 292, 359, 549
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 1 cut(s) 163
SetI ASST 5 cut(s) 40, 84, 327, 403, 432
SfcI CTRYAG 1 cut(s) 481
SinI GGWCC 1 cut(s) 529
Sse9I AATT 2 cut(s) 29, 420
SspI AATATT 1 cut(s) 472
SspMI CTAG 3 cut(s) 11, 75, 377
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 29, 420
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 3 cut(s) 470, 490, 499
TseI GCWGC 2 cut(s) 480, 505
TspDTI ATGAA 2 cut(s) 95, 464
TspRI CASTG 3 cut(s) 470, 490, 499
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 529
XapI RAATTY 1 cut(s) 29
XbaI TCTAGA 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 3 cut(s) 11, 75, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.