RLG00000009938

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000417
Physical Location & Seq
Forward (+)
60650246 .. 60658380
8135 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009938

Sequence Viewer

Length: 1776 bp
ATGGCAGGAGAAGAAATTCTTGTGCCGGCCACACCTACCTATGATTTTGGCAGGAGTTTAGCTTGCATGGAAGCCTCGGATGACCGTCTCTCTGATCATTTTCTCACCTATTCCACCTTTGACTATAAAGAGGAGGTTTTGAATCCAAAGAAGGGGATTTCAGCTGAGAAAAGCTGGCCAAAAATGTTTGCATTGAGAGAAGGGAATGATGGACTGCCCACATGCAAAGTGCACTCCTTGTATGAGATTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGAAGAGATCATACACTTATTGATATCATCGATGACCGCGAGAAAAGCAAGAAAAGCAAGAAATGCAAGAAATGCATCTTCCGAGTTCCTAACGTGCTCCGGAGACAAAACCCTGAAGCATATACACCTGACGTTGTTTCAATAGGACCTTTTCATCATTATCGAGAAAAGCGAGGCAAGGAGAAAGGTAAAGGAGTCAAGGAAGGCAAACAAGGCATAGGCGAGGTAGATTTCCAACTTAAGAAACGAGTGAAAAAGAGCTATTTGAATGAAGTTCTCACAGGTATGAAGATAACTTTGGAAGAGTTGACCGCAAAAGTTACTGAGCTCTCAGATCTGAAGAATGAAGGTGGCTTTGAGGAACGAGCCCGCAATTTTTATGCAGAACCACTTGATCATATTTCTTCCAAAGACTTCATCGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTGAAAATTCAAAACTCAGGGCCTTTGATGATCCGCTGTTCAACATGAGCTGTATGTTTCATTTCCTATGCGATGACATTTTGCTTCTAGAGAATCAATTACCTTGGTTTGTTATCCACAGTTTGTATAGCCTTACCCATGAAATATACCCTGATGAAGCCTCCCTCTCTACTATCATCCTTAAAGCCTTCAGCATGTCACCATCACTGAAGCAAAGTTGCTCATCTTATAATAAGCATCTCCGCAAAAGCAAGTGTCATTGTGATGCTGATTATCTGCACATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTCAAGACCATAGATGCGAGAGTAGCTAGAAAAGAATCTATGTCCAACCGAGCTGGAGAACATCAAGTGCATAGAAGGACCATTGACAAGGGAGAGAGTAAAGCTGTTCAGGAAGCTATCTTTGACCCAGATCTACATCGTATATGTACCGCAACCGCTCTCTCAAAGGCAGACATTAAATTCAGAATGGTCAAAAAGGAGAGCATAATGGATATCCGATTCGAGAATGGTGGGTGGTTCTGCAATGGGATTCTTGAGATTCCACAACTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATTGAGCAATGCTACCATGGTTATTCAAACGAGATAACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAAGAAGATATGGAATTACTTTGCAAGCAAAAAGTAATTGGTAACTCGATGAGTGATGAAGATGGTTGTAAGTTTTTCAGCAACCTTTACAAAGACATCCCGCACAACAAGTTCTACTATGTTGAGCTGTGCAAAAAAGTGAATGATCGTTACAGATCGAGATGGTTTACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAGTCCCTGGAGAATTTTAGCTTTTGGGATAGGTATTATCATTTTGATTCTCACCGCGTGGAGTCAGACACTCAGCATTCGGGTTAACATGCGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

592

Amino Acids

68.29

Weight (kDa)

8.63

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 125 - 576 8.5e-96 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 996
AarI CACCTGC 1 cut(s) 1761
Acc16I TGCGCA 1 cut(s) 1769
Acc36I ACCTGC 1 cut(s) 1761
AccBSI CCGCTC 1 cut(s) 1241
AccII CGCG 2 cut(s) 336, 1733
AccIII TCCGGA 1 cut(s) 396
AciI CCGC 9 cut(s) 334, 609, 667, 800, 1009, 1233, 1239, 1574, 1731
AclI AACGTT 1 cut(s) 1356
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 2 cut(s) 27, 176
AcsI RAATTY 5 cut(s) 15, 772, 1262, 1670, 1689
AcuI CTGAAG 4 cut(s) 432, 656, 940, 995
AdeI CACNNNGTG 1 cut(s) 1734
AfaI GTAC 1 cut(s) 1231
AfiI CCNNNNNNNGG 1 cut(s) 152
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 9 cut(s) 142, 438, 565, 752, 777, 808, 1087, 1425, 1473
AjnI CCWGG 1 cut(s) 1682
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
Alw21I GWGCWC 3 cut(s) 234, 396, 627
Alw26I GTCTC 2 cut(s) 92, 394
Alw44I GTGCAC 1 cut(s) 230
AlwI GGATC 1 cut(s) 791
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 3 cut(s) 27, 176, 786
ApaLI GTGCAC 1 cut(s) 230
ApoI RAATTY 5 cut(s) 15, 772, 1262, 1670, 1689
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 1770
AspS9I GGNCC 3 cut(s) 443, 786, 1161
AsuHPI GGTGA 3 cut(s) 97, 957, 1720
AvaII GGWCC 2 cut(s) 443, 1161
BaeGI GKGCMC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 178
BanII GRGCYC 2 cut(s) 627, 667
BarI GAAGNNNNNNTAC 2 cut(s) 292, 324
Bbv12I GWGCWC 3 cut(s) 234, 396, 627
BccI CCATC 5 cut(s) 203, 976, 1454, 1529, 1629
BciT130I CCWGG 1 cut(s) 1684
BclI TGATCA 2 cut(s) 94, 691
BcoDI GTCTC 2 cut(s) 92, 394
BfaI CTAG 3 cut(s) 854, 1110, 1677
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 1761
BglII AGATCT 2 cut(s) 631, 1213
Bme1390I CCNGG 1 cut(s) 1684
Bme18I GGWCC 2 cut(s) 443, 1161
BmgT120I GGNCC 3 cut(s) 443, 786, 1161
BmiI GGNNCC 1 cut(s) 1388
BmrFI CCNGG 1 cut(s) 1684
BmsI GCATC 4 cut(s) 381, 1012, 1021, 1087
BpmI CTGGAG 2 cut(s) 1158, 1705
BpuEI CTTGAG 3 cut(s) 284, 1358, 1643
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 1218
BsaJI CCNNGG 4 cut(s) 75, 869, 1414, 1682
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 25
Bse3DI GCAATG 3 cut(s) 1333, 1392, 1412
Bse8I GATNNNNATC 1 cut(s) 1218
BseAI TCCGGA 1 cut(s) 396
BseBI CCWGG 1 cut(s) 1684
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 4 cut(s) 75, 869, 1414, 1682
BseGI GGATG 3 cut(s) 85, 942, 1569
BseJI GATNNNNATC 1 cut(s) 1218
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 3 cut(s) 1333, 1392, 1412
BseMII CTCAG 6 cut(s) 156, 287, 612, 642, 796, 1762
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 1028
Bsh1236I CGCG 2 cut(s) 336, 1733
BshFI GGCC 3 cut(s) 29, 178, 788
BshVI ATCGAT 1 cut(s) 327
BsiHKAI GWGCWC 3 cut(s) 234, 396, 627
BsiSI CCGG 2 cut(s) 26, 397
BslFI GGGAC 1 cut(s) 1665
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 92, 394
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 1665
BsmI GAATGC 1 cut(s) 1752
BsnI GGCC 3 cut(s) 29, 178, 788
Bsp1286I GDGCHC 4 cut(s) 234, 396, 627, 667
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
Bsp19I CCATGG 1 cut(s) 1414
BspACI CCGC 9 cut(s) 334, 609, 667, 800, 1009, 1233, 1239, 1574, 1731
BspANI GGCC 3 cut(s) 29, 178, 788
BspCNI CTCAG 6 cut(s) 157, 288, 613, 641, 795, 1761
BspDI ATCGAT 1 cut(s) 327
BspEI TCCGGA 1 cut(s) 396
BspFNI CGCG 2 cut(s) 336, 1733
BspLI GGNNCC 1 cut(s) 1388
BspMI ACCTGC 1 cut(s) 1761
BspPI GGATC 1 cut(s) 791
BspTI CTTAAG 1 cut(s) 536
BsrBI CCGCTC 1 cut(s) 1241
BsrDI GCAATG 3 cut(s) 1333, 1392, 1412
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 75, 869, 1414, 1682
BssMI GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
BssT1I CCWWGG 2 cut(s) 869, 1414
Bst2UI CCWGG 1 cut(s) 1684
Bst4CI ACNGT 4 cut(s) 86, 737, 756, 887
Bst6I CTCTTC 3 cut(s) 295, 594, 1474
BstAFI CTTAAG 1 cut(s) 536
BstAPI GCANNNNNTGC 2 cut(s) 360, 369
BstC8I GCNNGC 5 cut(s) 27, 64, 176, 667, 1499
BstDEI CTNAG 6 cut(s) 165, 296, 621, 628, 782, 1748
BstDSI CCRYGG 1 cut(s) 1414
BstF5I GGATG 3 cut(s) 85, 942, 1569
BstFNI CGCG 2 cut(s) 336, 1733
BstHHI GCGC 1 cut(s) 1770
BstKTI GATC 9 cut(s) 97, 307, 634, 694, 799, 1057, 1216, 1621, 1631
BstMAI GTCTC 2 cut(s) 92, 394
BstMBI GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
BstMWI GCNNNNNNNGC 6 cut(s) 342, 351, 360, 369, 510, 1106
BstNI CCWGG 1 cut(s) 1684
BstNSI RCATGY 3 cut(s) 225, 964, 1768
BstSCI CCNGG 1 cut(s) 1682
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 2 cut(s) 336, 1733
BstX2I RGATCY 2 cut(s) 631, 1213
BstXI CCANNNNNNTGG 1 cut(s) 1453
BstYI RGATCY 2 cut(s) 631, 1213
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 3 cut(s) 29, 178, 788
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 1414
BtgZI GCGATG 1 cut(s) 852
BtsCI GGATG 3 cut(s) 85, 942, 1569
BtsIMutI CAGTG 1 cut(s) 971
BveI ACCTGC 1 cut(s) 1761
Cac8I GCNNGC 5 cut(s) 27, 64, 176, 667, 1499
CfoI GCGC 1 cut(s) 1770
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 443, 786, 1161
ClaI ATCGAT 1 cut(s) 327
Csp6I GTAC 1 cut(s) 1230
CviAII CATG 8 cut(s) 67, 222, 811, 905, 961, 1415, 1644, 1765
CviQI GTAC 1 cut(s) 1230
DdeI CTNAG 6 cut(s) 165, 296, 621, 628, 782, 1748
DpnI GATC 9 cut(s) 96, 306, 633, 693, 798, 1056, 1215, 1620, 1630
DpnII GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
DraIII CACNNNGTG 1 cut(s) 1734
EaeI YGGCCR 2 cut(s) 27, 176
Eam1104I CTCTTC 3 cut(s) 295, 594, 1474
EarI CTCTTC 3 cut(s) 295, 594, 1474
Ecl136II GAGCTC 1 cut(s) 625
Eco130I CCWWGG 2 cut(s) 869, 1414
Eco24I GRGCYC 2 cut(s) 627, 667
Eco32I GATATC 2 cut(s) 322, 1297
Eco47I GGWCC 2 cut(s) 443, 1161
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 4 cut(s) 432, 656, 940, 995
EcoICRI GAGCTC 1 cut(s) 625
EcoO109I RGGNCCY 2 cut(s) 443, 786
EcoRII CCWGG 1 cut(s) 1682
EcoRV GATATC 2 cut(s) 322, 1297
EcoT14I CCWWGG 2 cut(s) 869, 1414
EcoT22I ATGCAT 1 cut(s) 374
EcoT38I GRGCYC 2 cut(s) 627, 667
ErhI CCWWGG 2 cut(s) 869, 1414
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 8 cut(s) 70, 225, 814, 908, 964, 1418, 1647, 1768
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 1 cut(s) 1665
FatI CATG 8 cut(s) 66, 221, 810, 904, 960, 1414, 1643, 1764
FauI CCCGC 2 cut(s) 674, 1581
FbaI TGATCA 2 cut(s) 94, 691
FokI GGATG 3 cut(s) 92, 929, 1556
FriOI GRGCYC 2 cut(s) 627, 667
FspBI CTAG 3 cut(s) 854, 1110, 1677
FspI TGCGCA 1 cut(s) 1769
GlaI GCGC 1 cut(s) 1769
GsuI CTGGAG 2 cut(s) 1158, 1705
HaeIII GGCC 3 cut(s) 29, 178, 788
HapII CCGG 2 cut(s) 26, 397
HhaI GCGC 1 cut(s) 1770
Hin1II CATG 8 cut(s) 70, 225, 814, 908, 964, 1418, 1647, 1768
Hin6I GCGC 1 cut(s) 1768
HinP1I GCGC 1 cut(s) 1768
HincII GTYRAC 3 cut(s) 606, 733, 1762
HindII GTYRAC 3 cut(s) 606, 733, 1762
HinfI GANTC 9 cut(s) 142, 492, 859, 1118, 1302, 1333, 1342, 1723, 1738
HpaI GTTAAC 1 cut(s) 1762
HpaII CCGG 2 cut(s) 26, 397
HphI GGTGA 3 cut(s) 97, 957, 1720
Hpy166II GTNNAC 5 cut(s) 232, 606, 733, 1641, 1762
Hpy8I GTNNAC 5 cut(s) 232, 606, 733, 1641, 1762
HpyAV CCTTC 6 cut(s) 145, 194, 494, 638, 964, 1152
HpyCH4III ACNGT 4 cut(s) 86, 737, 756, 887
HpyCH4IV ACGT 3 cut(s) 390, 429, 1356
HpyF10VI GCNNNNNNNGC 6 cut(s) 342, 351, 360, 369, 510, 1106
HpyF3I CTNAG 6 cut(s) 165, 296, 621, 628, 782, 1748
HpySE526I ACGT 3 cut(s) 390, 429, 1356
Hsp92II CATG 8 cut(s) 70, 225, 814, 908, 964, 1418, 1647, 1768
HspAI GCGC 1 cut(s) 1768
Kpn2I TCCGGA 1 cut(s) 396
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 2 cut(s) 94, 691
KspAI GTTAAC 1 cut(s) 1762
Kzo9I GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
LmnI GCTCC 1 cut(s) 399
LweI GCATC 4 cut(s) 381, 1012, 1021, 1087
MaeI CTAG 3 cut(s) 854, 1110, 1677
MaeII ACGT 3 cut(s) 390, 429, 1356
MaeIII GTNAC 4 cut(s) 616, 963, 1514, 1622
MalI GATC 9 cut(s) 96, 306, 633, 693, 798, 1056, 1215, 1620, 1630
MbiI CCGCTC 1 cut(s) 1241
MboI GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
MfeI CAATTG 1 cut(s) 1398
MflI RGATCY 2 cut(s) 631, 1213
MhlI GDGCHC 4 cut(s) 234, 396, 627, 667
MlsI TGGCCA 1 cut(s) 178
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 2 cut(s) 501, 1747
MmeI TCCRAC 3 cut(s) 556, 1152, 1339
Mox20I TGGCCA 1 cut(s) 178
Mph1103I ATGCAT 1 cut(s) 374
MroI TCCGGA 1 cut(s) 396
MroNI GCCGGC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 15
MscI TGGCCA 1 cut(s) 178
MseI TTAA 4 cut(s) 537, 948, 1260, 1761
MslI CAYNNNNRTG 4 cut(s) 581, 719, 1029, 1451
Msp20I TGGCCA 1 cut(s) 178
MspA1I CMGCKG 2 cut(s) 164, 802
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 2 cut(s) 26, 397
MspR9I CCNGG 1 cut(s) 1684
MunI CAATTG 1 cut(s) 1398
Mva1269I GAATGC 1 cut(s) 1752
MvaI CCWGG 1 cut(s) 1684
MvnI CGCG 2 cut(s) 336, 1733
MwoI GCNNNNNNNGC 6 cut(s) 342, 351, 360, 369, 510, 1106
NaeI GCCGGC 1 cut(s) 27
NcoI CCATGG 1 cut(s) 1414
NdeII GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 8 cut(s) 70, 225, 814, 908, 964, 1418, 1647, 1768
NlaIV GGNNCC 1 cut(s) 1388
NmuCI GTSAC 1 cut(s) 963
NsbI TGCGCA 1 cut(s) 1769
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 3 cut(s) 225, 964, 1768
PaqCI CACCTGC 1 cut(s) 1761
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 466
PctI GAATGC 1 cut(s) 1752
PdiI GCCGGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 7 cut(s) 142, 859, 1118, 1302, 1333, 1342, 1723
PleI GAGTC 2 cut(s) 500, 1746
PpsI GAGTC 2 cut(s) 500, 1746
PpuMI RGGWCCY 1 cut(s) 443
PsiI TTATAA 1 cut(s) 996
Psp124BI GAGCTC 1 cut(s) 627
Psp1406I AACGTT 1 cut(s) 1356
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 1682
PspGI CCWGG 1 cut(s) 1682
PspN4I GGNNCC 1 cut(s) 1388
PspPI GGNCC 3 cut(s) 443, 786, 1161
PspPPI RGGWCCY 1 cut(s) 443
PsuI RGATCY 2 cut(s) 631, 1213
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 1231
RsaNI GTAC 1 cut(s) 1230
RseI CAYNNNNRTG 4 cut(s) 581, 719, 1029, 1451
SacI GAGCTC 1 cut(s) 627
SaqAI TTAA 4 cut(s) 537, 948, 1260, 1761
Sau3AI GATC 9 cut(s) 94, 304, 631, 691, 796, 1054, 1213, 1618, 1628
Sau96I GGNCC 3 cut(s) 443, 786, 1161
SchI GAGTC 2 cut(s) 501, 1747
ScrFI CCNGG 1 cut(s) 1684
SduI GDGCHC 4 cut(s) 234, 396, 627, 667
SfaNI GCATC 4 cut(s) 381, 1012, 1021, 1087
SinI GGWCC 2 cut(s) 443, 1161
SmiMI CAYNNNNRTG 4 cut(s) 581, 719, 1029, 1451
SmlI CTYRAG 4 cut(s) 263, 536, 1337, 1658
SmoI CTYRAG 4 cut(s) 263, 536, 1337, 1658
SsiI CCGC 9 cut(s) 334, 609, 667, 800, 1009, 1233, 1239, 1574, 1731
SspMI CTAG 3 cut(s) 854, 1110, 1677
SstI GAGCTC 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 1682
StyI CCWWGG 2 cut(s) 869, 1414
TaaI ACNGT 4 cut(s) 86, 737, 756, 887
TaiI ACGT 3 cut(s) 393, 432, 1359
TaqI TCGA 6 cut(s) 327, 460, 717, 1305, 1520, 1631
TfiI GAWTC 7 cut(s) 142, 859, 1118, 1302, 1333, 1342, 1723
Tru1I TTAA 4 cut(s) 537, 948, 1260, 1761
Tru9I TTAA 4 cut(s) 537, 948, 1260, 1761
TscAI CASTG 1 cut(s) 978
TseFI GTSAC 1 cut(s) 963
Tsp45I GTSAC 1 cut(s) 963
TspDTI ATGAA 9 cut(s) 440, 582, 599, 657, 703, 815, 921, 936, 1545
TspRI CASTG 1 cut(s) 978
Vha464I CTTAAG 1 cut(s) 536
VneI GTGCAC 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 443, 1161
XapI RAATTY 5 cut(s) 15, 772, 1262, 1670, 1689
XbaI TCTAGA 1 cut(s) 853
XceI RCATGY 3 cut(s) 225, 964, 1768
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 3 cut(s) 854, 1110, 1677
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.