Rmu_sc0003643.1_g000007

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003643.1
OG0000417
Physical Location & Seq
Reverse (-)
31084 .. 36733
5650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003643.1_g000007.1.cds

Sequence Viewer

Length: 1185 bp
atgaagaaaactttgaaagagttgactgcagaagtcattaagctctcagatcaaaagaatgaaggcgaatttgatcaacgcgcgcgcgctttttatgcagaaccacttgatgatcatatttcctctgaagagttcatcaagatgatgatagttgacggctgcttcctaattcaactgtttcggaagtgttacgatccgaaactcagggcctttgatgacccagtgttcaacatggactgtatgtttcatttcctatgccatgacattttgctcctagaaaatcaattaccttggtttgttatccacagtttgtatagccttatcattgaagaataccctaatcaagccttcctctctactctcatccttgaagccttcagcatgctaccatcattgaagcaaagttgctcatcttataataagcatctccgcagaaacaagtgtttttgtgatgctgattatctgcacatacttgatctggtaagaaattccatagtaattccatcagggaccaaagcggctggaaaagaatctatgtccaaccctgaagaacatgaagttgactctgggaacaaacacgagagaaacaataaagttgttcatgaagctaccattgacccagattcacatcaaattcgtaccgcaaccgctctctcaaaggcagatattaaattcaaaagcgtagaaaaggagagcataatggacatccatttcgaaacgggcgggtgtttcaggaatgggattcttaagattccactgctaaacgttggaatgtcatcggaaacattattcaggaacctcattgcaatcgagcaatgctaccatggttattcaaacgaggttacatcttatgccatctttatggataacctcatctcttcaaaggaagatatcaagatcgacagtgatgaaatcaattgttccatgccttcaggcttctcgctccttctcctcaaaagcctgagagggttggaagataacgcagaagacaaccgcctctacgctcggaacccaatcgacatcgcttctcttcgtccctcccaactcgaagagttcgtcaaagaaaccattactgtgtctgagagtgatgcagcttggctgccagaaaagtttctcaatcagaagccagtttacttggatcaagaagcttccaacagccaagaagaggatatgaaaagctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

394

Amino Acids

45.17

Weight (kDa)

5.02

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccBSI CCGCTC 1 cut(s) 650
AccII CGCG 4 cut(s) 81, 83, 85, 87
AciI CCGC 6 cut(s) 430, 518, 642, 648, 723, 994
AclI AACGTT 1 cut(s) 765
AclWI GGATC 2 cut(s) 188, 1146
AcsI RAATTY 4 cut(s) 68, 487, 633, 671
AcuI CTGAAG 4 cut(s) 147, 361, 567, 915
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 1 cut(s) 1165
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 9 cut(s) 16, 173, 229, 329, 371, 397, 676, 834, 882
AluBI AGCT 5 cut(s) 43, 608, 1094, 1148, 1179
AluI AGCT 5 cut(s) 43, 608, 1094, 1148, 1179
AlwI GGATC 2 cut(s) 188, 1146
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 3 cut(s) 159, 1091, 1099
ApoI RAATTY 4 cut(s) 68, 487, 633, 671
ArsI GACNNNNNNTTYG 4 cut(s) 695, 727, 1041, 1073
Asp700I GAANNNNTTC 1 cut(s) 1110
AspLEI GCGC 4 cut(s) 83, 85, 87, 89
AspS9I GGNCC 2 cut(s) 207, 510
AsuII TTCGAA 1 cut(s) 714
AvaII GGWCC 1 cut(s) 510
BarI GAAGNNNNNNTAC 2 cut(s) 1115, 1147
BauI CACGAG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 993
BbvI GCAGC 3 cut(s) 146, 1086, 1103
BccI CCATC 3 cut(s) 397, 511, 863
BceAI ACGGC 1 cut(s) 172
BclI TGATCA 2 cut(s) 73, 112
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 746
BisI GCNGC 4 cut(s) 160, 519, 1092, 1100
BlsI GCNGC 4 cut(s) 161, 520, 1093, 1101
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 2 cut(s) 207, 510
BmiI GGNNCC 3 cut(s) 511, 797, 1010
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 3 cut(s) 433, 442, 1078
BmuI ACTGGG 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 993
Bpu14I TTCGAA 1 cut(s) 714
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 290, 823
Bsc4I CCNNNNNNNGG 1 cut(s) 1165
Bse1I ACTGG 2 cut(s) 221, 1127
Bse3DI GCAATG 2 cut(s) 801, 821
Bse8I GATNNNNATC 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 290, 823
BseGI GGATG 2 cut(s) 363, 705
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 1165
BseMI GCAATG 2 cut(s) 801, 821
BseMII CTCAG 4 cut(s) 60, 217, 953, 1071
BseNI ACTGG 2 cut(s) 221, 1127
BsePI GCGCGC 3 cut(s) 81, 83, 85
BseRI GAGGAG 1 cut(s) 941
BseXI GCAGC 3 cut(s) 146, 1086, 1103
BsgI GTGCAG 1 cut(s) 449
Bsh1236I CGCG 4 cut(s) 81, 83, 85, 87
BshFI GGCC 1 cut(s) 209
BslFI GGGAC 2 cut(s) 523, 1020
BslI CCNNNNNNNGG 1 cut(s) 1165
BsmFI GGGAC 2 cut(s) 523, 1020
BsnI GGCC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 714
Bsp143I GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 6 cut(s) 430, 518, 642, 648, 723, 994
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 4 cut(s) 59, 216, 954, 1072
BspFNI CGCG 4 cut(s) 81, 83, 85, 87
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 3 cut(s) 511, 797, 1010
BspMAI CTGCAG 1 cut(s) 31
BspPI GGATC 2 cut(s) 188, 1146
BspT104I TTCGAA 1 cut(s) 714
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 650
BsrDI GCAATG 2 cut(s) 801, 821
BsrI ACTGG 2 cut(s) 221, 1127
BssECI CCNNGG 2 cut(s) 290, 823
BssHII GCGCGC 3 cut(s) 81, 83, 85
BssMI GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 2 cut(s) 290, 823
Bst2BI CACGAG 1 cut(s) 578
Bst4CI ACNGT 5 cut(s) 177, 239, 308, 905, 1075
Bst6I CTCTTC 5 cut(s) 123, 883, 1035, 1044, 1158
BstAFI CTTAAG 1 cut(s) 746
BstBI TTCGAA 1 cut(s) 714
BstC8I GCNNGC 4 cut(s) 83, 85, 87, 383
BstDEI CTNAG 4 cut(s) 46, 203, 962, 1080
BstDSI CCRYGG 1 cut(s) 823
BstF5I GGATG 2 cut(s) 363, 705
BstFNI CGCG 4 cut(s) 81, 83, 85, 87
BstHHI GCGC 4 cut(s) 83, 85, 87, 89
BstKTI GATC 7 cut(s) 52, 76, 115, 196, 478, 900, 1141
BstMBI GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 4 cut(s) 81, 83, 85, 87
BstV1I GCAGC 3 cut(s) 146, 1086, 1103
BstV2I GAAGAC 1 cut(s) 993
BstXI CCANNNNNNTGG 1 cut(s) 862
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 823
BtgZI GCGATG 1 cut(s) 1006
BtsCI GGATG 2 cut(s) 363, 705
BtsI GCAGTG 1 cut(s) 755
BtsIMutI CAGTG 3 cut(s) 228, 755, 910
Cac8I GCNNGC 4 cut(s) 83, 85, 87, 383
CciI TCATGA 1 cut(s) 601
CfoI GCGC 4 cut(s) 83, 85, 87, 89
Cfr13I GGNCC 2 cut(s) 207, 510
Csp6I GTAC 1 cut(s) 639
CviAII CATG 7 cut(s) 232, 260, 382, 554, 602, 824, 925
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 4 cut(s) 46, 203, 962, 1080
DpnI GATC 7 cut(s) 51, 75, 114, 195, 477, 899, 1140
DpnII GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
Eam1104I CTCTTC 5 cut(s) 123, 883, 1035, 1044, 1158
EarI CTCTTC 5 cut(s) 123, 883, 1035, 1044, 1158
Eco130I CCWWGG 2 cut(s) 290, 823
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 4 cut(s) 147, 361, 567, 915
EcoO109I RGGNCCY 1 cut(s) 207
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 2 cut(s) 290, 823
ErhI CCWWGG 2 cut(s) 290, 823
FaeI CATG 7 cut(s) 235, 263, 385, 557, 605, 827, 928
FaqI GGGAC 2 cut(s) 523, 1020
FatI CATG 7 cut(s) 231, 259, 381, 553, 601, 823, 924
FauI CCCGC 1 cut(s) 716
FbaI TGATCA 2 cut(s) 73, 112
Fnu4HI GCNGC 4 cut(s) 160, 519, 1092, 1100
FokI GGATG 2 cut(s) 350, 692
Fsp4HI GCNGC 4 cut(s) 160, 519, 1092, 1100
FspBI CTAG 1 cut(s) 275
GlaI GCGC 4 cut(s) 82, 84, 86, 88
GluI GCNGC 4 cut(s) 160, 519, 1092, 1100
HaeIII GGCC 1 cut(s) 209
HhaI GCGC 4 cut(s) 83, 85, 87, 89
Hin1II CATG 7 cut(s) 235, 263, 385, 557, 605, 827, 928
Hin6I GCGC 4 cut(s) 81, 83, 85, 87
HinP1I GCGC 4 cut(s) 81, 83, 85, 87
HincII GTYRAC 3 cut(s) 24, 154, 562
HindII GTYRAC 3 cut(s) 24, 154, 562
HindIII AAGCTT 1 cut(s) 1146
HinfI GANTC 5 cut(s) 530, 563, 623, 742, 751
Hpy166II GTNNAC 4 cut(s) 24, 154, 562, 1132
Hpy188I TCNGA 8 cut(s) 49, 127, 183, 198, 781, 1008, 1081, 1122
Hpy188III TCNNGA 6 cut(s) 139, 602, 733, 793, 895, 1142
Hpy8I GTNNAC 4 cut(s) 24, 154, 562, 1132
HpyAV CCTTC 5 cut(s) 56, 358, 385, 939, 956
HpyCH4III ACNGT 5 cut(s) 177, 239, 308, 905, 1075
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 5 cut(s) 29, 98, 466, 806, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 4 cut(s) 46, 203, 962, 1080
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 7 cut(s) 235, 263, 385, 557, 605, 827, 928
HspAI GCGC 4 cut(s) 81, 83, 85, 87
Ksp22I TGATCA 2 cut(s) 73, 112
Kzo9I GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
LmnI GCTCC 2 cut(s) 276, 948
Lsp1109I GCAGC 3 cut(s) 146, 1086, 1103
LweI GCATC 3 cut(s) 433, 442, 1078
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 188, 841
MalI GATC 7 cut(s) 51, 75, 114, 195, 477, 899, 1140
MauBI CGCGCGCG 2 cut(s) 81, 83
MbiI CCGCTC 1 cut(s) 650
MboI GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
MfeI CAATTG 1 cut(s) 916
MluCI AATT 8 cut(s) 68, 168, 284, 487, 498, 633, 671, 916
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 4 cut(s) 564, 748, 951, 1176
MroXI GAANNNNTTC 1 cut(s) 1110
MseI TTAA 3 cut(s) 39, 669, 747
MslI CAYNNNNRTG 3 cut(s) 140, 860, 1073
MspCI CTTAAG 1 cut(s) 746
MunI CAATTG 1 cut(s) 916
MvnI CGCG 4 cut(s) 81, 83, 85, 87
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 823
NdeII GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
NlaIII CATG 7 cut(s) 235, 263, 385, 557, 605, 827, 928
NlaIV GGNNCC 3 cut(s) 511, 797, 1010
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 714
PaeI GCATGC 1 cut(s) 385
PagI TCATGA 1 cut(s) 601
PauI GCGCGC 3 cut(s) 81, 83, 85
PcsI WCGNNNNNNNCGW 1 cut(s) 1053
PdmI GAANNNNTTC 1 cut(s) 1110
PfeI GAWTC 4 cut(s) 530, 623, 742, 751
PkrI GCNGC 4 cut(s) 161, 520, 1093, 1101
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PsiI TTATAA 1 cut(s) 417
Psp1406I AACGTT 1 cut(s) 765
PspN4I GGNNCC 3 cut(s) 511, 797, 1010
PspPI GGNCC 2 cut(s) 207, 510
PstI CTGCAG 1 cut(s) 31
PteI GCGCGC 3 cut(s) 81, 83, 85
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 3 cut(s) 140, 860, 1073
SaqAI TTAA 3 cut(s) 39, 669, 747
SatI GCNGC 4 cut(s) 160, 519, 1092, 1100
Sau3AI GATC 7 cut(s) 49, 73, 112, 193, 475, 897, 1138
Sau96I GGNCC 2 cut(s) 207, 510
SchI GAGTC 1 cut(s) 557
SfaNI GCATC 3 cut(s) 433, 442, 1078
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 714
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 3 cut(s) 140, 860, 1073
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SphI GCATGC 1 cut(s) 385
Sse9I AATT 8 cut(s) 68, 168, 284, 487, 498, 633, 671, 916
SsiI CCGC 6 cut(s) 430, 518, 642, 648, 723, 994
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 2 cut(s) 290, 823
TaaI ACNGT 5 cut(s) 177, 239, 308, 905, 1075
TaiI ACGT 1 cut(s) 768
TaqI TCGA 5 cut(s) 714, 810, 900, 1017, 1047
TasI AATT 8 cut(s) 68, 168, 284, 487, 498, 633, 671, 916
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 4 cut(s) 530, 623, 742, 751
Tru1I TTAA 3 cut(s) 39, 669, 747
Tru9I TTAA 3 cut(s) 39, 669, 747
TscAI CASTG 3 cut(s) 228, 762, 910
TseI GCWGC 3 cut(s) 159, 1091, 1099
TspDTI ATGAA 8 cut(s) 17, 75, 124, 236, 570, 590, 618, 924
TspRI CASTG 3 cut(s) 228, 762, 910
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 4 cut(s) 68, 487, 633, 671
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 1110
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.