Rmu_sc0018617.1_g000002

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018617.1
OG0000417
Physical Location & Seq
Forward (+)
1270 .. 1758
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018617.1_g000002.1.cds

Sequence Viewer

Length: 489 bp
atggacataggattcaagaaaggctgggttttcaagaatggagatattatgattccacagctaaatgtcggaatgctgtccgaatctttatttagaaacctcatagccttcgagcaatgctaccgtggttattcaaacgaaattacatcttatgccatgttaatggacaacctcattacgtcgaaagaagatatggttttgcttcgtaaagcaaaagtaataggcaactggctgagcagcgaggaagatgcctgcaagttcttcaacaacctttacaagggcatcccacacagcaagttctactatgctgatctctgcaaggaagtaaagattcgctacgaaataaaatggtattcatggatggcttcattcaagactgagaagctttctaatccatggacagttgctgcttttctcataggtattatccttttggctcttagcctatggacctccataaatagcatccggaactatatgcggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

162

Amino Acids

18.98

Weight (kDa)

9.18

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 468
AciI CCGC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 5 cut(s) 16, 34, 135, 265, 373
AluBI AGCT 2 cut(s) 61, 385
AluI AGCT 2 cut(s) 61, 385
AlwNI CAGNNNCTG 1 cut(s) 407
Aor13HI TCCGGA 1 cut(s) 468
ApeKI GCWGC 2 cut(s) 237, 407
AspS9I GGNCC 1 cut(s) 450
AvaII GGWCC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 249, 394
BccI CCATC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BisI GCNGC 2 cut(s) 238, 408
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 2 cut(s) 239, 409
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 450
BmsI GCATC 3 cut(s) 238, 291, 474
Bpu1102I GCTNAGC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 124, 395
BsaWI WCCGGW 1 cut(s) 468
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 124, 395
BseGI GGATG 3 cut(s) 282, 366, 465
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 2 cut(s) 224, 369
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 249, 394
BseYI CCCAGC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 277
BsmI GAATGC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 468
Bsp143I GATC 1 cut(s) 310
Bsp1720I GCTNAGC 1 cut(s) 233
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 1 cut(s) 481
BspCNI CTCAG 2 cut(s) 225, 370
BspEI TCCGGA 1 cut(s) 468
BsrDI GCAATG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 124, 395
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 2 cut(s) 125, 403
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 233, 378, 440
BstDSI CCRYGG 2 cut(s) 124, 395
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 3 cut(s) 282, 366, 465
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 249, 394
BstXI CCANNNNNNTGG 1 cut(s) 163
BtgI CCRYGG 2 cut(s) 124, 395
BtsCI GGATG 3 cut(s) 282, 366, 465
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 450
CviAII CATG 3 cut(s) 157, 357, 396
CviJI RGCY 8 cut(s) 24, 61, 107, 232, 365, 385, 437, 444
CviKI_1 RGCY 8 cut(s) 24, 61, 107, 232, 365, 385, 437, 444
DdeI CTNAG 3 cut(s) 233, 378, 440
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 450
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 3 cut(s) 160, 360, 399
FatI CATG 3 cut(s) 156, 356, 395
Fnu4HI GCNGC 2 cut(s) 238, 408
FokI GGATG 3 cut(s) 269, 373, 452
Fsp4HI GCNGC 2 cut(s) 238, 408
GluI GCNGC 2 cut(s) 238, 408
GsaI CCCAGC 1 cut(s) 28
HapII CCGG 1 cut(s) 469
Hin1II CATG 3 cut(s) 160, 360, 399
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 4 cut(s) 12, 52, 83, 331
HpaII CCGG 1 cut(s) 469
Hpy188I TCNGA 2 cut(s) 71, 82
Hpy188III TCNNGA 4 cut(s) 16, 34, 373, 469
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 125, 403
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 255, 318
HpyF3I CTNAG 3 cut(s) 233, 378, 440
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 3 cut(s) 160, 360, 399
Kpn2I TCCGGA 1 cut(s) 468
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 4 cut(s) 10, 214, 265, 482
Lsp1109I GCAGC 2 cut(s) 249, 394
LweI GCATC 3 cut(s) 238, 291, 474
MaeII ACGT 1 cut(s) 179
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 3 cut(s) 200, 253, 257
MluCI AATT 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 4 cut(s) 110, 182, 235, 463
MroI TCCGGA 1 cut(s) 468
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 469
Mva1269I GAATGC 1 cut(s) 78
NcoI CCATGG 1 cut(s) 395
NdeII GATC 1 cut(s) 310
NlaIII CATG 3 cut(s) 160, 360, 399
PctI GAATGC 1 cut(s) 78
PfeI GAWTC 4 cut(s) 12, 52, 83, 331
PkrI GCNGC 2 cut(s) 239, 409
PspFI CCCAGC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 450
PstNI CAGNNNCTG 1 cut(s) 407
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 238, 408
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 450
SetI ASST 8 cut(s) 63, 102, 174, 182, 273, 387, 424, 455
SfaNI GCATC 3 cut(s) 238, 291, 474
SinI GGWCC 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 481
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 125, 403
TaiI ACGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 111, 182
TasI AATT 1 cut(s) 141
TfiI GAWTC 4 cut(s) 12, 52, 83, 331
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseI GCWGC 2 cut(s) 237, 407
TspDTI ATGAA 2 cut(s) 345, 357
VpaK11BI GGWCC 1 cut(s) 450
XagI CCTNNNNNAGG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.