RchiOBHm_Chr4g0390661

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
5935025 .. 5936107
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36363

Sequence Viewer

Length: 1083 bp
ATGGCGGGAAATGGTGAAGGCTGTACAGATCATATCGTCATAGATGTCGATGACGGCAAAATATGCAAGAAATGCATCTTCAAAGTTCCTATGCTGCTCCGGAAACAAAACTCAGACGCGTATACACCGCACGTTGTTTCAATTGGACCTTTTCATCATCAAGGAAAGGGAGGCAAAGATGAGGGCAAAACAGGCAACAAGGAAGAATTTCAACTCGTGGAACGAGTGAAAAAGAGCTATTTGAATGAAATTCTCTCTCGCATGGATATGACTTTGATAGAGTTGACCGCAAAAGTTACTGAGCTCTCAGATGAAAAGAAAGAAGGCGGATTTAAGGTACGCGCCCGTGATCTTTATGCAGAACCACTTGATCATATTTCCTCCGAAGACTTGGTGGAGATGATGATAGTTGACGGTTGCTTTCTAATTCAACTGTTTCGGAAGTGTAACGATTCAAAACTCAGGGCCTTTGATGACCCGGTTTTCAACATGGATTGCATGTTCCACTTCCTCTGCCATGACCTTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTATCCACAAATTGTATGGCCTTACCCATGATTTATACCCTGTTGAGCCCTCCCTCTCTATTCTCATCCTTAAAGCCTTCACCATGATACCATCACTGAAGCAAAGTTGCGCAACCTACAATATGCATCTCCACAAAATCAAGCGTCATTGTGATGCTGATGTTCTGCACATACTTGATCTGGTAAGAGCTTCGGTAGTTATTCCAATGAGGAACATAGACGAGAGAGCACGTGGAGCAGTTACTAGAGATGCTATATTCGATCCAGATTGTCATCAAATGCATACTGTGACCGCTCTCTCAGAGGCAGGAATTATATTCATACCGGTCATAAAGGAATCCTTGTTGGACATACGATTTGAAGAGAGGGTAGCGACGAATGGGGTTCTTAAGATTCCGCAGCTAAACATTGGAATGTCGTCCGAAACATTATTCAGGAACCTCATTGCTATTGAGCAATGTTACCATGTTTATTCAAACGAAATTACATCATATGTCATCTTGATGGATAACCTTATCTCCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

360

Amino Acids

40.95

Weight (kDa)

5.88

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 26 - 360 1.1e-73 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 667
AccBSI CCGCTC 1 cut(s) 851
AccI GTMKAC 1 cut(s) 122
AccII CGCG 2 cut(s) 119, 342
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 6 cut(s) 5, 128, 288, 327, 849, 953
AclWI GGATC 1 cut(s) 812
AcsI RAATTY 2 cut(s) 206, 249
AcuI CTGAAG 1 cut(s) 674
AcvI CACGTG 1 cut(s) 788
AfaI GTAC 2 cut(s) 25, 339
AflII CTTAAG 1 cut(s) 944
AflIII ACRYGT 1 cut(s) 117
AgeI ACCGGT 1 cut(s) 880
AgsI TTSAA 9 cut(s) 82, 141, 212, 244, 431, 456, 487, 917, 1032
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 4 cut(s) 237, 304, 746, 958
AluI AGCT 4 cut(s) 237, 304, 746, 958
Alw21I GWGCWC 2 cut(s) 306, 787
AlwI GGATC 1 cut(s) 812
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 2 cut(s) 465, 574
ApeKI GCWGC 2 cut(s) 94, 955
ApoI RAATTY 2 cut(s) 206, 249
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
AsiGI ACCGGT 1 cut(s) 880
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 344, 668
AspS9I GGNCC 2 cut(s) 146, 465
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 26, 628
AvaII GGWCC 1 cut(s) 146
BanII GRGCYC 2 cut(s) 306, 606
BauI CACGAG 1 cut(s) 215
BbrPI CACGTG 1 cut(s) 788
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 306, 787
BbvI GCAGC 2 cut(s) 81, 967
BccI CCATC 2 cut(s) 655, 1054
BceAI ACGGC 1 cut(s) 70
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 1 cut(s) 479
BfaI CTAG 2 cut(s) 533, 801
BfrI CTTAAG 1 cut(s) 944
BisI GCNGC 2 cut(s) 95, 956
BlsI GCNGC 2 cut(s) 96, 957
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 146, 465
BmiI GGNNCC 1 cut(s) 995
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 4 cut(s) 84, 691, 700, 796
BpiI GAAGAC 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 788
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 2 cut(s) 99, 880
BsaXI ACNNNNNCTCC 1 cut(s) 1058
Bse118I RCCGGY 1 cut(s) 880
Bse3DI GCAATG 2 cut(s) 999, 1019
Bse8I GATNNNNATC 1 cut(s) 828
BseAI TCCGGA 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 1 cut(s) 621
BseJI GATNNNNATC 1 cut(s) 828
BseMI GCAATG 2 cut(s) 999, 1019
BseMII CTCAG 5 cut(s) 126, 291, 321, 475, 870
BseRI GAGGAG 1 cut(s) 1066
BseXI GCAGC 2 cut(s) 81, 967
BsgI GTGCAG 1 cut(s) 707
Bsh1236I CGCG 2 cut(s) 119, 342
BshFI GGCC 2 cut(s) 467, 576
BshTI ACCGGT 1 cut(s) 880
BsiHKAI GWGCWC 2 cut(s) 306, 787
BsiSI CCGG 3 cut(s) 100, 479, 881
BsnI GGCC 2 cut(s) 467, 576
Bsp1286I GDGCHC 3 cut(s) 306, 606, 787
Bsp13I TCCGGA 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 23
Bsp143I GATC 5 cut(s) 28, 349, 370, 733, 817
BspACI CCGC 6 cut(s) 5, 128, 288, 327, 849, 953
BspANI GGCC 2 cut(s) 467, 576
BspCNI CTCAG 5 cut(s) 125, 292, 320, 474, 869
BspEI TCCGGA 1 cut(s) 99
BspFNI CGCG 2 cut(s) 119, 342
BspLI GGNNCC 1 cut(s) 995
BspPI GGATC 1 cut(s) 812
BspTI CTTAAG 1 cut(s) 944
BsrBI CCGCTC 1 cut(s) 851
BsrDI GCAATG 2 cut(s) 999, 1019
BsrFI RCCGGY 1 cut(s) 880
BsrGI TGTACA 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 5 cut(s) 28, 349, 370, 733, 817
BssNAI GTATAC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 548
Bst1107I GTATAC 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 416, 435, 844
Bst6I CTCTTC 1 cut(s) 912
BstAFI CTTAAG 1 cut(s) 944
BstAPI GCANNNNNTGC 2 cut(s) 63, 72
BstAUI TGTACA 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 788
BstDEI CTNAG 5 cut(s) 112, 300, 307, 461, 856
BstF5I GGATG 1 cut(s) 621
BstFNI CGCG 2 cut(s) 119, 342
BstHHI GCGC 2 cut(s) 344, 668
BstKTI GATC 5 cut(s) 31, 352, 373, 736, 820
BstMBI GATC 5 cut(s) 28, 349, 370, 733, 817
BstMWI GCNNNNNNNGC 4 cut(s) 63, 72, 192, 791
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 477
BstUI CGCG 2 cut(s) 119, 342
BstV1I GCAGC 2 cut(s) 81, 967
BstV2I GAAGAC 1 cut(s) 393
BstZ17I GTATAC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 467, 576
BtsCI GGATG 1 cut(s) 621
BtsIMutI CAGTG 1 cut(s) 650
CfoI GCGC 2 cut(s) 344, 668
Cfr10I RCCGGY 1 cut(s) 880
Cfr13I GGNCC 2 cut(s) 146, 465
CseI GACGC 2 cut(s) 125, 689
Csp6I GTAC 2 cut(s) 24, 338
CspAI ACCGGT 1 cut(s) 880
CviAII CATG 7 cut(s) 262, 490, 499, 518, 584, 640, 1022
CviJI RGCY 9 cut(s) 21, 237, 304, 467, 576, 604, 632, 746, 958
CviKI_1 RGCY 9 cut(s) 21, 237, 304, 467, 576, 604, 632, 746, 958
CviQI GTAC 2 cut(s) 24, 338
DdeI CTNAG 5 cut(s) 112, 300, 307, 461, 856
DpnI GATC 5 cut(s) 30, 351, 372, 735, 819
DpnII GATC 5 cut(s) 28, 349, 370, 733, 817
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
EciI GGCGGA 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 2 cut(s) 306, 606
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 674
Eco72I CACGTG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 3 cut(s) 77, 684, 840
EcoT38I GRGCYC 2 cut(s) 306, 606
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 7 cut(s) 265, 493, 502, 521, 587, 643, 1025
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FatI CATG 7 cut(s) 261, 489, 498, 517, 583, 639, 1021
FauNDI CATATG 1 cut(s) 1048
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 95, 956
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 2 cut(s) 306, 606
Fsp4HI GCNGC 2 cut(s) 95, 956
FspBI CTAG 2 cut(s) 533, 801
FspI TGCGCA 1 cut(s) 667
GlaI GCGC 2 cut(s) 343, 667
GluI GCNGC 2 cut(s) 95, 956
HaeIII GGCC 2 cut(s) 467, 576
HapII CCGG 3 cut(s) 100, 479, 881
HgaI GACGC 2 cut(s) 125, 689
HhaI GCGC 2 cut(s) 344, 668
Hin1II CATG 7 cut(s) 265, 493, 502, 521, 587, 643, 1025
Hin6I GCGC 2 cut(s) 342, 666
HinP1I GCGC 2 cut(s) 342, 666
HincII GTYRAC 2 cut(s) 285, 412
HindII GTYRAC 2 cut(s) 285, 412
HinfI GANTC 3 cut(s) 452, 893, 949
HpaII CCGG 3 cut(s) 100, 479, 881
HphI GGTGA 2 cut(s) 26, 628
Hpy166II GTNNAC 3 cut(s) 123, 285, 412
Hpy188I TCNGA 6 cut(s) 115, 310, 385, 441, 859, 979
Hpy188III TCNNGA 5 cut(s) 100, 821, 991, 1057, 1080
Hpy8I GTNNAC 3 cut(s) 123, 285, 412
Hpy99I CGWCG 1 cut(s) 934
HpyAV CCTTC 3 cut(s) 11, 317, 643
HpyCH4III ACNGT 3 cut(s) 416, 435, 844
HpyCH4IV ACGT 2 cut(s) 132, 787
HpyCH4V TGCA 7 cut(s) 66, 75, 359, 498, 682, 724, 838
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 72, 192, 791
HpyF3I CTNAG 5 cut(s) 112, 300, 307, 461, 856
HpySE526I ACGT 2 cut(s) 132, 787
Hsp92II CATG 7 cut(s) 265, 493, 502, 521, 587, 643, 1025
HspAI GCGC 2 cut(s) 342, 666
Kpn2I TCCGGA 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 5 cut(s) 28, 349, 370, 733, 817
LmnI GCTCC 3 cut(s) 102, 534, 791
Lsp1109I GCAGC 2 cut(s) 81, 967
LweI GCATC 4 cut(s) 84, 691, 700, 796
MaeI CTAG 2 cut(s) 533, 801
MaeII ACGT 2 cut(s) 132, 787
MaeIII GTNAC 5 cut(s) 295, 446, 796, 844, 1016
MalI GATC 5 cut(s) 30, 351, 372, 735, 819
MbiI CCGCTC 1 cut(s) 851
MboI GATC 5 cut(s) 28, 349, 370, 733, 817
MboII GAAGA 4 cut(s) 70, 215, 398, 929
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 3 cut(s) 306, 606, 787
MluCI AATT 7 cut(s) 141, 206, 249, 426, 566, 867, 1038
MluI ACGCGT 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 882
Mph1103I ATGCAT 3 cut(s) 77, 684, 840
MroI TCCGGA 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 3 cut(s) 333, 627, 945
MslI CAYNNNNRTG 4 cut(s) 266, 708, 968, 1058
MspCI CTTAAG 1 cut(s) 944
MspI CCGG 3 cut(s) 100, 479, 881
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 1 cut(s) 141
MvnI CGCG 2 cut(s) 119, 342
MwoI GCNNNNNNNGC 4 cut(s) 63, 72, 192, 791
NciI CCSGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 1048
NdeII GATC 5 cut(s) 28, 349, 370, 733, 817
NlaIII CATG 7 cut(s) 265, 493, 502, 521, 587, 643, 1025
NlaIV GGNNCC 1 cut(s) 995
NmuCI GTSAC 1 cut(s) 844
NsbI TGCGCA 1 cut(s) 667
NsiI ATGCAT 3 cut(s) 77, 684, 840
NspI RCATGY 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 3 cut(s) 452, 893, 949
PinAI ACCGGT 1 cut(s) 880
PkrI GCNGC 2 cut(s) 96, 957
PmaCI CACGTG 1 cut(s) 788
PmlI CACGTG 1 cut(s) 788
Ppu21I YACGTR 1 cut(s) 788
Psp124BI GAGCTC 1 cut(s) 306
PspCI CACGTG 1 cut(s) 788
PspN4I GGNNCC 1 cut(s) 995
PspPI GGNCC 2 cut(s) 146, 465
RsaI GTAC 2 cut(s) 25, 339
RsaNI GTAC 2 cut(s) 24, 338
RseI CAYNNNNRTG 4 cut(s) 266, 708, 968, 1058
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 333, 627, 945
SatI GCNGC 2 cut(s) 95, 956
Sau3AI GATC 5 cut(s) 28, 349, 370, 733, 817
Sau96I GGNCC 2 cut(s) 146, 465
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 3 cut(s) 306, 606, 787
SfaNI GCATC 4 cut(s) 84, 691, 700, 796
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 4 cut(s) 266, 708, 968, 1058
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
Sse9I AATT 7 cut(s) 141, 206, 249, 426, 566, 867, 1038
SsiI CCGC 6 cut(s) 5, 128, 288, 327, 849, 953
SspMI CTAG 2 cut(s) 533, 801
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 3 cut(s) 416, 435, 844
TaiI ACGT 2 cut(s) 135, 790
TaqI TCGA 2 cut(s) 48, 816
TasI AATT 7 cut(s) 141, 206, 249, 426, 566, 867, 1038
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 3 cut(s) 452, 893, 949
Tru1I TTAA 3 cut(s) 333, 627, 945
Tru9I TTAA 3 cut(s) 333, 627, 945
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 2 cut(s) 94, 955
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 4 cut(s) 143, 261, 327, 865
TspRI CASTG 1 cut(s) 657
Vha464I CTTAAG 1 cut(s) 944
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 206, 249
XceI RCATGY 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 2 cut(s) 533, 801
Zsp2I ATGCAT 3 cut(s) 77, 684, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.