Rorug03G0328300

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000417
Physical Location & Seq
Reverse (-)
36440336 .. 36440593
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0328300.1

Sequence Viewer

Length: 258 bp
ATGCTAGTCCAACTACAGGAGGGGAAAATATTCAAAACCAACCAACCACCATGCATTATTGTGTGGAAGAAGTCTCCTCCTAGTAGTTCTATGAAAATCAACTTTGATGGTTATGTTTACAGGAATTCAGCTGCTGGGGCTTTTATCATTCGAGATTGCAATAGTAAACCTCTATATGCAGTTGCTAAAAGCTCCGGAAACACAACAATACCAGTAGCAGAAGCCACATCACTCAGAAATAGCCTTGCCAGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

85

Amino Acids

9.22

Weight (kDa)

9.7

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 194
AcsI RAATTY 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 2 cut(s) 131, 192
AluI AGCT 2 cut(s) 131, 192
Alw26I GTCTC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 118
BccI CCATC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 5, 81
BfmI CTRYAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 212, 249
BseAI TCCGGA 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 212, 249
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 246
BspEI TCCGGA 1 cut(s) 194
BsrI ACTGG 2 cut(s) 212, 249
BstDEI CTNAG 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 134
CviAII CATG 1 cut(s) 51
CviJI RGCY 5 cut(s) 131, 140, 192, 224, 243
CviKI_1 RGCY 5 cut(s) 131, 140, 192, 224, 243
DdeI CTNAG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 56
FaeI CATG 1 cut(s) 54
FaiI YATR 6 cut(s) 52, 92, 114, 175, 177, 256
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 5, 81
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 138
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 54
HpaII CCGG 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 118, 167
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 2 cut(s) 152, 195
Hpy8I GTNNAC 2 cut(s) 118, 167
HpyCH4V TGCA 3 cut(s) 54, 159, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 1 cut(s) 54
Kpn2I TCCGGA 1 cut(s) 194
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 2, 106, 120, 208, 225
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 2 cut(s) 5, 81
MboII GAAGA 1 cut(s) 79
MluCI AATT 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 3 cut(s) 13, 87, 180
Mph1103I ATGCAT 1 cut(s) 56
MroI TCCGGA 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 54
NsiI ATGCAT 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 1 cut(s) 132
SetI ASST 3 cut(s) 133, 172, 194
SfcI CTRYAG 1 cut(s) 14
SgeI CNNG 9 cut(s) 17, 29, 63, 93, 133, 147, 164, 207, 224
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 1 cut(s) 124
SspI AATATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 5, 81
TaqI TCGA 1 cut(s) 151
TasI AATT 1 cut(s) 124
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 256
XapI RAATTY 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 5, 81
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.