RchiOBHm_Chr4g0390031

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000417
Physical Location & Seq
Reverse (-)
5137188 .. 5138669
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36310

Sequence Viewer

Length: 1482 bp
ATGTCTGCAAATCGTAAAAGTGGTAGAGATCATACAGTTATTGATATCATCGATGACCGCGAGAAAAGCAAGAAATGCATCTTCCGAGTTCCTAACGTGATCCGGAGACAAAACCCTGAAGCATATACACCTGACGTTGTTTCAATAGGAACTTTTCATCATTATCGAGAAAAGCGAGGCACGGAGAAAGGTAAAGGAGTCAAGGAAGGAAAACAAGGCATAGGCGAGGAAGATTTCCAACTTACGAAACGAGTGAAAAAGAGCTATTTGAATGAAATTCTCACAGGTATGAAGATAACTTTGGAAGAGTTGACCGCAAAAGTTACTGAGCTCTCAGATCAGAAGAATGAAGGTGGCTTTGAGGAACGAGCCCGCAATTTTTATGCAGAACCATTTGATCATATTTCTTCCAAAGACTTCATGGAGATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGGAGTGTGAAAATTCAAAACTCAGGGCCTTTGATGATCCGCTGTTCAACATGCACTGTATGTTTCATTTCCTATGCCATGACATTTTGCTTCTAGAGAATCAATTACCTTGGTTTGTTATCCACAGTTTGTATAGCCTTACCCATGAAATATACCCTGATGAAGCCTCCCTCTCTACTCTCATCCTTAAAGCCTTCAGCATGTCACCATCACTGAAGCAAAGTTGCTCATCTTATAATAAGCATCTCCGCAAAAGCAAGTGTCATTGTGATGCTGATTATCTGCACATACTTGATCTGGTAAGAGCTTCCATAGTTATTCCATTCAAGACCATCGATGCGAGAGTAGCTAGAAAAGAATCTATGTCCAGCCAAGCTGAAGAGCATCAAGTGCATAAAAGGACCATTGACAAGGCAGAGAGTAAAGCTGTTCAGGAACCTATCTTTGACCCAGATCTACATCGTCTATGTACCGCAACCGCTCTCTCAAAGGCAGACATTAAATTCAAAAGCGTAGAAAAGGAGAGCATAATGGACATCCAATTCAAAGAGGGTGGGTGGTTCAGGAATGGAATTCTTATGATTCCAAAGCTAAACGTTGGAATGTCATCAGAAACATTATTCAGGAACCTCATTGCAATTGAGCAATGCTACCATGGTTATTCAAACGAGATAACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTTTGCAAGCAAAAAGTAATTGGTAACTCGATGAGTGATGAAGATGGTTGTAAGTTTTTCAGCAACCTTTACAAAGACATCCCGCACAACAAGTTCTACTATGTTGAGCTGTGCAAAAAAGTGAATGATCGTTACAGATCGAGATGGTTTACATGGTTGGCTTTACTCAAGAGTGAAAAATTTTCTAGTCCCTGGAGAATTTTAGCTTTTGGGATAGGTATTATCATTTTGATTCTCACCGCGTGGAGTCAGACACTCAGCATTCGGGTGAACATGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

493

Amino Acids

57.16

Weight (kDa)

8.27

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 27 - 478 9e-94 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AccBSI CCGCTC 1 cut(s) 947
AccII CGCG 2 cut(s) 60, 1439
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 9 cut(s) 58, 315, 373, 506, 715, 939, 945, 1280, 1437
AclI AACGTT 1 cut(s) 1062
AclWI GGATC 2 cut(s) 94, 497
AcsI RAATTY 6 cut(s) 276, 478, 968, 1038, 1376, 1395
AcuI CTGAAG 4 cut(s) 138, 646, 701, 864
AdeI CACNNNGTG 1 cut(s) 1440
AfaI GTAC 1 cut(s) 937
AjnI CCWGG 1 cut(s) 1388
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 9 cut(s) 264, 331, 773, 815, 842, 893, 1057, 1306, 1403
AluI AGCT 9 cut(s) 264, 331, 773, 815, 842, 893, 1057, 1306, 1403
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 2 cut(s) 94, 497
Aor13HI TCCGGA 1 cut(s) 102
AoxI GGCC 1 cut(s) 492
ApoI RAATTY 6 cut(s) 276, 478, 968, 1038, 1376, 1395
AspS9I GGNCC 2 cut(s) 492, 867
AsuHPI GGTGA 3 cut(s) 663, 1426, 1477
AvaII GGWCC 1 cut(s) 867
BanII GRGCYC 2 cut(s) 333, 373
Bbv12I GWGCWC 1 cut(s) 333
BccI CCATC 5 cut(s) 682, 806, 1160, 1235, 1335
BciT130I CCWGG 1 cut(s) 1390
BclI TGATCA 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 3 cut(s) 560, 816, 1383
BglII AGATCT 1 cut(s) 919
Bme1390I CCNGG 1 cut(s) 1390
Bme18I GGWCC 1 cut(s) 867
BmgT120I GGNCC 2 cut(s) 492, 867
BmiI GGNNCC 2 cut(s) 903, 1094
BmrFI CCNGG 1 cut(s) 1390
BmsI GCATC 5 cut(s) 87, 718, 727, 793, 859
BpmI CTGGAG 1 cut(s) 1411
BpuEI CTTGAG 1 cut(s) 1349
Bsa29I ATCGAT 2 cut(s) 51, 801
BsaBI GATNNNNATC 1 cut(s) 924
BsaJI CCNNGG 3 cut(s) 575, 1120, 1388
BsaWI WCCGGW 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 1098, 1118
Bse8I GATNNNNATC 1 cut(s) 924
BseAI TCCGGA 1 cut(s) 102
BseBI CCWGG 1 cut(s) 1390
BseCI ATCGAT 2 cut(s) 51, 801
BseDI CCNNGG 3 cut(s) 575, 1120, 1388
BseGI GGATG 3 cut(s) 648, 1002, 1275
BseJI GATNNNNATC 1 cut(s) 924
BseMI GCAATG 2 cut(s) 1098, 1118
BseMII CTCAG 4 cut(s) 318, 348, 502, 1468
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 2 cut(s) 60, 1439
BshFI GGCC 1 cut(s) 494
BshVI ATCGAT 2 cut(s) 51, 801
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 1371
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 1371
BsmI GAATGC 1 cut(s) 1458
BsnI GGCC 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 333, 373
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
Bsp19I CCATGG 1 cut(s) 1120
BspACI CCGC 9 cut(s) 58, 315, 373, 506, 715, 939, 945, 1280, 1437
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 4 cut(s) 319, 347, 501, 1467
BspDI ATCGAT 2 cut(s) 51, 801
BspEI TCCGGA 1 cut(s) 102
BspFNI CGCG 2 cut(s) 60, 1439
BspLI GGNNCC 2 cut(s) 903, 1094
BspPI GGATC 2 cut(s) 94, 497
BspQI GCTCTTC 1 cut(s) 840
BsrBI CCGCTC 1 cut(s) 947
BsrDI GCAATG 2 cut(s) 1098, 1118
BssECI CCNNGG 3 cut(s) 575, 1120, 1388
BssMI GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
BssT1I CCWWGG 2 cut(s) 575, 1120
Bst2UI CCWGG 1 cut(s) 1390
Bst4CI ACNGT 5 cut(s) 37, 443, 462, 524, 593
Bst6I CTCTTC 3 cut(s) 300, 840, 1180
BstAPI GCANNNNNTGC 2 cut(s) 75, 856
BstC8I GCNNGC 2 cut(s) 373, 1205
BstDEI CTNAG 4 cut(s) 327, 334, 488, 1454
BstDSI CCRYGG 1 cut(s) 1120
BstF5I GGATG 3 cut(s) 648, 1002, 1275
BstFNI CGCG 2 cut(s) 60, 1439
BstKTI GATC 9 cut(s) 31, 102, 340, 400, 505, 763, 922, 1327, 1337
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
BstMWI GCNNNNNNNGC 4 cut(s) 66, 75, 812, 856
BstNI CCWGG 1 cut(s) 1390
BstNSI RCATGY 3 cut(s) 520, 670, 1474
BstSCI CCNGG 1 cut(s) 1388
BstUI CGCG 2 cut(s) 60, 1439
BstX2I RGATCY 1 cut(s) 919
BstXI CCANNNNNNTGG 1 cut(s) 1159
BstYI RGATCY 1 cut(s) 919
Bsu15I ATCGAT 2 cut(s) 51, 801
BsuRI GGCC 1 cut(s) 494
BsuTUI ATCGAT 2 cut(s) 51, 801
BtgI CCRYGG 1 cut(s) 1120
BtsCI GGATG 3 cut(s) 648, 1002, 1275
BtsIMutI CAGTG 2 cut(s) 520, 677
Cac8I GCNNGC 2 cut(s) 373, 1205
Cfr13I GGNCC 2 cut(s) 492, 867
ClaI ATCGAT 2 cut(s) 51, 801
Csp6I GTAC 1 cut(s) 936
CspCI CAANNNNNGTGG 2 cut(s) 1000, 1035
CviAII CATG 8 cut(s) 421, 517, 545, 611, 667, 1121, 1350, 1471
CviQI GTAC 1 cut(s) 936
DdeI CTNAG 4 cut(s) 327, 334, 488, 1454
DpnI GATC 9 cut(s) 30, 101, 339, 399, 504, 762, 921, 1326, 1336
DpnII GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
DraIII CACNNNGTG 1 cut(s) 1440
Eam1104I CTCTTC 3 cut(s) 300, 840, 1180
EarI CTCTTC 3 cut(s) 300, 840, 1180
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 575, 1120
Eco24I GRGCYC 2 cut(s) 333, 373
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 867
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 4 cut(s) 138, 646, 701, 864
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 492
EcoRI GAATTC 1 cut(s) 1038
EcoRII CCWGG 1 cut(s) 1388
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 575, 1120
EcoT22I ATGCAT 2 cut(s) 80, 1476
EcoT38I GRGCYC 2 cut(s) 333, 373
ErhI CCWWGG 2 cut(s) 575, 1120
FaeI CATG 8 cut(s) 424, 520, 548, 614, 670, 1124, 1353, 1474
FaqI GGGAC 1 cut(s) 1371
FatI CATG 8 cut(s) 420, 516, 544, 610, 666, 1120, 1349, 1470
FauI CCCGC 2 cut(s) 380, 1287
FbaI TGATCA 1 cut(s) 397
FokI GGATG 3 cut(s) 635, 989, 1262
FriOI GRGCYC 2 cut(s) 333, 373
FspBI CTAG 3 cut(s) 560, 816, 1383
GsuI CTGGAG 1 cut(s) 1411
HaeIII GGCC 1 cut(s) 494
HapII CCGG 1 cut(s) 103
Hin1II CATG 8 cut(s) 424, 520, 548, 614, 670, 1124, 1353, 1474
HincII GTYRAC 2 cut(s) 312, 439
HindII GTYRAC 2 cut(s) 312, 439
HinfI GANTC 6 cut(s) 198, 565, 824, 1048, 1429, 1444
HpaII CCGG 1 cut(s) 103
HphI GGTGA 3 cut(s) 663, 1426, 1477
Hpy166II GTNNAC 4 cut(s) 312, 439, 1347, 1468
Hpy188I TCNGA 5 cut(s) 86, 337, 342, 1078, 1449
Hpy8I GTNNAC 4 cut(s) 312, 439, 1347, 1468
HpyAV CCTTC 3 cut(s) 200, 344, 670
HpyCH4III ACNGT 5 cut(s) 37, 443, 462, 524, 593
HpyCH4IV ACGT 3 cut(s) 96, 135, 1062
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 75, 812, 856
HpyF3I CTNAG 4 cut(s) 327, 334, 488, 1454
HpySE526I ACGT 3 cut(s) 96, 135, 1062
Hsp92II CATG 8 cut(s) 424, 520, 548, 614, 670, 1124, 1353, 1474
Kpn2I TCCGGA 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
LguI GCTCTTC 1 cut(s) 840
LweI GCATC 5 cut(s) 87, 718, 727, 793, 859
MaeI CTAG 3 cut(s) 560, 816, 1383
MaeII ACGT 3 cut(s) 96, 135, 1062
MaeIII GTNAC 4 cut(s) 322, 669, 1220, 1328
MalI GATC 9 cut(s) 30, 101, 339, 399, 504, 762, 921, 1326, 1336
MbiI CCGCTC 1 cut(s) 947
MboI GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
MfeI CAATTG 1 cut(s) 1104
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 2 cut(s) 333, 373
MlyI GAGTC 2 cut(s) 207, 1453
MmeI TCCRAC 2 cut(s) 262, 1045
MnlI CCTC 8 cut(s) 170, 220, 355, 643, 647, 1009, 1106, 1178
Mph1103I ATGCAT 2 cut(s) 80, 1476
MroI TCCGGA 1 cut(s) 102
MseI TTAA 2 cut(s) 654, 966
MslI CAYNNNNRTG 5 cut(s) 287, 425, 735, 1157, 1463
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 1390
MunI CAATTG 1 cut(s) 1104
Mva1269I GAATGC 1 cut(s) 1458
MvaI CCWGG 1 cut(s) 1390
MvnI CGCG 2 cut(s) 60, 1439
MwoI GCNNNNNNNGC 4 cut(s) 66, 75, 812, 856
NcoI CCATGG 1 cut(s) 1120
NdeII GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
NlaIII CATG 8 cut(s) 424, 520, 548, 614, 670, 1124, 1353, 1474
NlaIV GGNNCC 2 cut(s) 903, 1094
NmuCI GTSAC 1 cut(s) 669
NsiI ATGCAT 2 cut(s) 80, 1476
NspI RCATGY 3 cut(s) 520, 670, 1474
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 172
PctI GAATGC 1 cut(s) 1458
PfeI GAWTC 4 cut(s) 565, 824, 1048, 1429
PleI GAGTC 2 cut(s) 206, 1452
PpsI GAGTC 2 cut(s) 206, 1452
PsiI TTATAA 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 1062
Psp6I CCWGG 1 cut(s) 1388
PspGI CCWGG 1 cut(s) 1388
PspN4I GGNNCC 2 cut(s) 903, 1094
PspPI GGNCC 2 cut(s) 492, 867
PsuI RGATCY 1 cut(s) 919
RsaI GTAC 1 cut(s) 937
RsaNI GTAC 1 cut(s) 936
RseI CAYNNNNRTG 5 cut(s) 287, 425, 735, 1157, 1463
SacI GAGCTC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 2 cut(s) 654, 966
Sau3AI GATC 9 cut(s) 28, 99, 337, 397, 502, 760, 919, 1324, 1334
Sau96I GGNCC 2 cut(s) 492, 867
SchI GAGTC 2 cut(s) 207, 1453
ScrFI CCNGG 1 cut(s) 1390
SduI GDGCHC 2 cut(s) 333, 373
SfaNI GCATC 5 cut(s) 87, 718, 727, 793, 859
SinI GGWCC 1 cut(s) 867
SmiMI CAYNNNNRTG 5 cut(s) 287, 425, 735, 1157, 1463
SmlI CTYRAG 1 cut(s) 1364
SmoI CTYRAG 1 cut(s) 1364
SsiI CCGC 9 cut(s) 58, 315, 373, 506, 715, 939, 945, 1280, 1437
SspMI CTAG 3 cut(s) 560, 816, 1383
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 1388
StyI CCWWGG 2 cut(s) 575, 1120
TaaI ACNGT 5 cut(s) 37, 443, 462, 524, 593
TaiI ACGT 3 cut(s) 99, 138, 1065
TaqI TCGA 5 cut(s) 51, 166, 801, 1226, 1337
TfiI GAWTC 4 cut(s) 565, 824, 1048, 1429
Tru1I TTAA 2 cut(s) 654, 966
Tru9I TTAA 2 cut(s) 654, 966
TscAI CASTG 2 cut(s) 527, 684
TseFI GTSAC 1 cut(s) 669
Tsp45I GTSAC 1 cut(s) 669
TspDTI ATGAA 9 cut(s) 146, 288, 305, 363, 409, 521, 627, 642, 1251
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 527, 684
VpaK11BI GGWCC 1 cut(s) 867
XapI RAATTY 6 cut(s) 276, 478, 968, 1038, 1376, 1395
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 3 cut(s) 520, 670, 1474
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XspI CTAG 3 cut(s) 560, 816, 1383
Zsp2I ATGCAT 2 cut(s) 80, 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.