Rorug03G0328100

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000417
Physical Location & Seq
Forward (+)
36436218 .. 36436487
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0328100.1

Sequence Viewer

Length: 270 bp
ATGATCACTTCTTTGAGTGCTATTACTTCTTTTTCTTTACAATCTATTTTTCGTGAAGCAAATGGTGTGGCCCATAGATTGGCACATCTTGCTAGTGTCTCTTACTTAGATGATTATTGGTTAGATGATACTCCTGTGATTATCCAGAATGTACTCTATAAGGATTCTTGTACTAGTACTCGAGGTGTAGGTAACATGTCCCCCTCGCTGTACAATCATCCTTCTTATATTAATAATAATAACGGGCGTGGGGCTAAGCCTCCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

89

Amino Acids

9.76

Weight (kDa)

6.81

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AfaI GTAC 4 cut(s) 153, 172, 178, 212
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 195
AhlI ACTAGT 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 1 cut(s) 69
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 180
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 93, 174
BlpI GCTNAGC 1 cut(s) 255
BmcAI AGTACT 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 70
BmrI ACTGGG 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 264
BshFI GGCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 210
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 210
BsrI ACTGG 1 cut(s) 264
BssMI GATC 1 cut(s) 3
BstAPI GCANNNNNTGC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 106, 255
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 4 cut(s) 152, 171, 177, 211
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 71, 254, 259
CviKI_1 RGCY 3 cut(s) 71, 254, 259
CviQI GTAC 4 cut(s) 152, 171, 177, 211
DdeI CTNAG 2 cut(s) 106, 255
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco88I CYCGRG 1 cut(s) 180
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 75, 159, 197, 228
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 195
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 204
FspBI CTAG 2 cut(s) 93, 174
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 53, 145
HpyAV CCTTC 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 106, 255
Hsp92II CATG 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 147, 158
MaeI CTAG 2 cut(s) 93, 174
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MnlI CCTC 3 cut(s) 176, 214, 270
MseI TTAA 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 199
NspI RCATGY 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 180
PciI ACATGT 1 cut(s) 195
PfeI GAWTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 79
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 231
PspPI GGNCC 1 cut(s) 70
PspXI VCTCGAGB 1 cut(s) 180
RsaI GTAC 4 cut(s) 153, 172, 178, 212
RsaNI GTAC 4 cut(s) 152, 171, 177, 211
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 70
ScaI AGTACT 1 cut(s) 178
SetI ASST 2 cut(s) 187, 193
Sfr274I CTCGAG 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SpeI ACTAGT 1 cut(s) 173
SspMI CTAG 2 cut(s) 93, 174
TaqI TCGA 1 cut(s) 181
TatI WGTACW 4 cut(s) 151, 170, 176, 210
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 79
VspI ATTAAT 1 cut(s) 231
XceI RCATGY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 180
XspI CTAG 2 cut(s) 93, 174
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.