Rorug03G0328000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000417
Physical Location & Seq
Reverse (-)
36367463 .. 36367639
177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0328000.1

Sequence Viewer

Length: 177 bp
ATGTGGAATGTGCCATTAGTTGAATCTTTATTTCTCCCACATGAAGTCGAAACAATCTTAACTATCCCTTTAGCTGGGCCAAGATATCAAGATACGATTGTGTGGCATTATGGAAAAGATGGAATTTATAATGCCAAATCAGGGGTGTGGCTTGCAATGGAATTAAGGAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

58

Amino Acids

6.71

Weight (kDa)

6.01

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AcsI RAATTY 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 74, 141
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AoxI GGCC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
BccI CCATC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 141
Bse3DI GCAATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 74, 141
BseMI GCAATG 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 74, 141
BsnI GGCC 1 cut(s) 79
BspANI GGCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 41
CviJI RGCY 3 cut(s) 74, 79, 151
CviKI_1 RGCY 3 cut(s) 74, 79, 151
Eco32I GATATC 1 cut(s) 86
EcoRV GATATC 1 cut(s) 86
FaeI CATG 1 cut(s) 44
FaiI YATR 3 cut(s) 42, 111, 129
FatI CATG 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 79
Hin1II CATG 1 cut(s) 44
HinfI GANTC 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 155
Hsp92II CATG 1 cut(s) 44
LpnPI CCDG 2 cut(s) 60, 126
MluCI AATT 2 cut(s) 123, 161
MseI TTAA 2 cut(s) 59, 164
NlaIII CATG 1 cut(s) 44
PfeI GAWTC 1 cut(s) 23
PsiI TTATAA 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 59, 164
Sau96I GGNCC 1 cut(s) 77
SetI ASST 1 cut(s) 76
SgeI CNNG 6 cut(s) 53, 87, 93, 101, 153, 164
Sse9I AATT 2 cut(s) 123, 161
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 123, 161
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 59, 164
Tru9I TTAA 2 cut(s) 59, 164
TspDTI ATGAA 1 cut(s) 57
XapI RAATTY 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.