Rh4DG026200

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000417
Physical Location & Seq
Reverse (-)
4760575 .. 4762187
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG026200.1

Sequence Viewer

Length: 1464 bp
ATGGCAGATCATACTATTAATATGGTAGTGCATGATTGCAAGAAATGCAAGAAAACCAAGAAATGCATCTTCAAAGTTCCTAAGGTGCTGCGGAGACAAAATTCCCAGGCATATACGCCTGATGTTGTCGCAATTGGACCTTTTCATCATCCCCAAAAGGGAAGCAAGGAAGATAACATATGCCAAGAATGCAAGAAACACTTGGGGAAAAAAGAATGCGAGGAATGCAAGGAAGGGAAGGAAGTCAATGAAGAAGAATTGCAACTCATGGAACGAGTGAAAAAGACGTACTTGGATGAAATTCTCAGAGGCATGAATGTAAATTTGGAAGAGCTGATGGCGAAAGTTATTGAGCATTCAGATCAAAAGAATGAAGACACTTTTGTGAAAAGCGCCCGTGATTTTTATGCGGAACCACTTGATCATATTTCCTCCAAAGATTTCATGGAGATGATGATACGTGACGGTTGCTTCCTGATTCAACTACTTCGGAAGTGTAAGTATGAGGATCTTAAGAAGGATGATGACCCAGTATTCAACATGGATTGCATGTTTCATTTCCTATGCCATGACCTTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTCTGGAGAGTTTCTATAACCTTATCCTTGGAAATTGCCAAGGTCATCACTCCTCCCTCTCTTTTCTCATTCTTGATGCCTTCACCAAATTACCATCACTGAAGCATAGTTGCAAATCCTATAAACACCATCTTCTCAAAGACCAACTTCATAGACACCATTGTCATGGTGATGCTTATGTTCTGCACATACTCGATCTGATAAGATCTTCTATAGTTGTTCCAATGGAGATCAAAGACGAGAGAGCAAATAAAGTTCGTAAACAGGAATTCTTCGACCCAGAAGTACATCAGATGCATACTGCGACTGCTCTTTCAAAGGCAGGCATTAGATTCAGAAAAGTGGAAAGGGAAAGCATAATGGACATAGGATTTGAAGAGGGCCGGGTTCTCACCAATGGAGTTTTCAATGGAGTGCTTACTATTCCACAGCTAAATGTTGGAATGTTGTCTGAATCATTATTCAGGAACCTTATTGCTATTGAGCAATGCTACCCTGGTTATTCAAATGAAATGACATCTTATGCCATCTTAATGGACAACCTCATCTCTTCCAAAGAAGATATGGAATTACTCTGCAAGGCGAAAGTAATAGGTAACTGGCTGAGTGATGAAGATGGTTGCAAGTTCTTCAACAACCTTTACAAGGGTATCCCGCACAACAAGTTTTACTATGTTGATCTCTGCGAGAAATTGAACAGAGGTTATAGAATTAGAGGGTATACATGGGTGGCTTCATTCAAGACTGAAAAGTTCTGTAACCCATGGACAGTTGCTGCTTTCCTCATAGGTATTCTCCTTCTGGCTCTCAGCCTATGGACCACCACGAATAACATTCGGAGCTTCATGCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

487

Amino Acids

56.69

Weight (kDa)

7.28

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 23 - 472 1.1e-97 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 768
AccI GTMKAC 1 cut(s) 1328
AciI CCGC 3 cut(s) 91, 410, 1262
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 4 cut(s) 100, 300, 322, 875
AcuI CTGAAG 1 cut(s) 728
AfaI GTAC 2 cut(s) 290, 894
AfiI CCNNNNNNNGG 2 cut(s) 158, 1252
AflII CTTAAG 1 cut(s) 512
AjnI CCWGG 2 cut(s) 105, 1102
AjuI GAANNNNNNNTTGG 4 cut(s) 308, 340, 995, 1027
AleI CACNNNNGTG 1 cut(s) 383
AluBI AGCT 3 cut(s) 334, 1039, 1449
AluI AGCT 3 cut(s) 334, 1039, 1449
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 1 cut(s) 516
AlwNI CAGNNNCTG 1 cut(s) 1382
AoxI GGCC 1 cut(s) 988
ApeKI GCWGC 2 cut(s) 88, 1382
ApoI RAATTY 4 cut(s) 100, 300, 322, 875
ArsI GACNNNNNNTTYG 2 cut(s) 962, 994
AseI ATTAAT 1 cut(s) 18
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 137, 988, 1425
AsuC2I CCSGG 1 cut(s) 992
AsuHPI GGTGA 3 cut(s) 682, 788, 991
AvaII GGWCC 2 cut(s) 137, 1425
AxyI CCTNAGG 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 1240, 1273
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 75, 1369
BccI CCATC 5 cut(s) 331, 709, 744, 1142, 1217
BciT130I CCWGG 2 cut(s) 107, 1104
BciVI GTATCC 1 cut(s) 1268
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 396
BfrI CTTAAG 1 cut(s) 512
BfuI GTATCC 1 cut(s) 1268
BglII AGATCT 1 cut(s) 812
BisI GCNGC 2 cut(s) 89, 1383
BlsI GCNGC 2 cut(s) 90, 1384
Bme1390I CCNGG 3 cut(s) 107, 992, 1104
Bme18I GGWCC 2 cut(s) 137, 1425
BmgT120I GGNCC 3 cut(s) 137, 988, 1425
BmiI GGNNCC 2 cut(s) 414, 1076
BmrFI CCNGG 3 cut(s) 107, 992, 1104
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 4 cut(s) 75, 673, 769, 891
BmuI ACTGGG 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 992
BsaAI YACGTR 1 cut(s) 461
BsaJI CCNNGG 6 cut(s) 105, 599, 634, 646, 1102, 1370
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 1252
Bse1I ACTGG 2 cut(s) 530, 1211
Bse21I CCTNAGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 1100
BseBI CCWGG 2 cut(s) 107, 1104
BseDI CCNNGG 6 cut(s) 105, 599, 634, 646, 1102, 1370
BseGI GGATG 3 cut(s) 148, 301, 526
BseLI CCNNNNNNNGG 2 cut(s) 158, 1252
BseMI GCAATG 1 cut(s) 1100
BseMII CTCAG 3 cut(s) 319, 1202, 1429
BseNI ACTGG 2 cut(s) 530, 1211
BseRI GAGGAG 1 cut(s) 649
BseXI GCAGC 2 cut(s) 75, 1369
BsgI GTGCAG 1 cut(s) 776
BshFI GGCC 1 cut(s) 990
BsiSI CCGG 1 cut(s) 991
BslI CCNNNNNNNGG 2 cut(s) 158, 1252
BsmAI GTCTC 1 cut(s) 88
BsmI GAATGC 4 cut(s) 194, 221, 230, 355
BsnI GGCC 1 cut(s) 990
Bsp143I GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
Bsp19I CCATGG 1 cut(s) 1370
BspACI CCGC 3 cut(s) 91, 410, 1262
BspANI GGCC 1 cut(s) 990
BspCNI CTCAG 3 cut(s) 318, 1203, 1428
BspLI GGNNCC 2 cut(s) 414, 1076
BspPI GGATC 1 cut(s) 516
BspQI GCTCTTC 1 cut(s) 324
BspTI CTTAAG 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 1100
BsrI ACTGG 2 cut(s) 530, 1211
BssECI CCNNGG 6 cut(s) 105, 599, 634, 646, 1102, 1370
BssMI GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
BssNAI GTATAC 1 cut(s) 1329
BssT1I CCWWGG 4 cut(s) 599, 634, 646, 1370
Bst1107I GTATAC 1 cut(s) 1329
Bst2UI CCWGG 2 cut(s) 107, 1104
Bst4CI ACNGT 2 cut(s) 467, 1378
Bst6I CTCTTC 3 cut(s) 324, 978, 1162
BstAFI CTTAAG 1 cut(s) 512
BstAPI GCANNNNNTGC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 931
BstDEI CTNAG 4 cut(s) 81, 305, 1211, 1415
BstDSI CCRYGG 1 cut(s) 1370
BstENI CCTNNNNNAGG 1 cut(s) 1250
BstF5I GGATG 3 cut(s) 148, 301, 526
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 8 cut(s) 10, 364, 424, 511, 805, 815, 840, 1288
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
BstMWI GCNNNNNNNGC 3 cut(s) 45, 189, 225
BstNI CCWGG 2 cut(s) 107, 1104
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 3 cut(s) 105, 990, 1102
BstSFI CTRYAG 1 cut(s) 819
BstV1I GCAGC 2 cut(s) 75, 1369
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 508, 812
BstXI CCANNNNNNTGG 2 cut(s) 773, 1141
BstYI RGATCY 2 cut(s) 508, 812
BstZ17I GTATAC 1 cut(s) 1329
Bsu36I CCTNAGG 1 cut(s) 81
BsuI GTATCC 1 cut(s) 1268
BsuRI GGCC 1 cut(s) 990
BtgI CCRYGG 1 cut(s) 1370
BtsCI GGATG 3 cut(s) 148, 301, 526
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 1 cut(s) 931
CaiI CAGNNNCTG 1 cut(s) 1382
CfoI GCGC 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 137, 988, 1425
Csp6I GTAC 2 cut(s) 289, 893
CviJI RGCY 8 cut(s) 334, 990, 1039, 1210, 1340, 1412, 1419, 1449
CviKI_1 RGCY 8 cut(s) 334, 990, 1039, 1210, 1340, 1412, 1419, 1449
CviQI GTAC 2 cut(s) 289, 893
DdeI CTNAG 4 cut(s) 81, 305, 1211, 1415
DpnI GATC 8 cut(s) 9, 363, 423, 510, 804, 814, 839, 1287
DpnII GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
DrdI GACNNNNNNGTC 1 cut(s) 768
DseDI GACNNNNNNGTC 1 cut(s) 768
Eam1104I CTCTTC 3 cut(s) 324, 978, 1162
EarI CTCTTC 3 cut(s) 324, 978, 1162
Eco130I CCWWGG 4 cut(s) 599, 634, 646, 1370
Eco47I GGWCC 2 cut(s) 137, 1425
Eco57I CTGAAG 1 cut(s) 728
Eco81I CCTNAGG 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 1250
EcoRI GAATTC 1 cut(s) 875
EcoRII CCWGG 2 cut(s) 105, 1102
EcoT14I CCWWGG 4 cut(s) 599, 634, 646, 1370
EcoT22I ATGCAT 2 cut(s) 68, 906
ErhI CCWWGG 4 cut(s) 599, 634, 646, 1370
FalI AAGNNNNNCTT 6 cut(s) 185, 217, 275, 307, 738, 770
FauI CCCGC 1 cut(s) 1269
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 1328
Fnu4HI GCNGC 2 cut(s) 89, 1383
FokI GGATG 3 cut(s) 135, 308, 533
Fsp4HI GCNGC 2 cut(s) 89, 1383
FspBI CTAG 1 cut(s) 584
GlaI GCGC 1 cut(s) 394
GluI GCNGC 2 cut(s) 89, 1383
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 1 cut(s) 990
HapII CCGG 1 cut(s) 991
HhaI GCGC 1 cut(s) 395
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HinfI GANTC 3 cut(s) 478, 939, 1061
HpaII CCGG 1 cut(s) 991
HphI GGTGA 3 cut(s) 682, 788, 991
Hpy166II GTNNAC 2 cut(s) 869, 1329
Hpy188I TCNGA 8 cut(s) 308, 361, 492, 807, 900, 944, 1060, 1446
Hpy188III TCNNGA 5 cut(s) 475, 611, 680, 1072, 1348
Hpy8I GTNNAC 2 cut(s) 869, 1329
HpyAV CCTTC 5 cut(s) 227, 232, 511, 697, 1415
HpyCH4III ACNGT 2 cut(s) 467, 1378
HpyCH4IV ACGT 2 cut(s) 287, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 189, 225
HpyF3I CTNAG 4 cut(s) 81, 305, 1211, 1415
HpySE526I ACGT 2 cut(s) 287, 460
HspAI GCGC 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 585, 1446
Lsp1109I GCAGC 2 cut(s) 75, 1369
LweI GCATC 4 cut(s) 75, 673, 769, 891
MaeI CTAG 1 cut(s) 584
MaeII ACGT 2 cut(s) 287, 460
MaeIII GTNAC 3 cut(s) 461, 1202, 1364
MalI GATC 8 cut(s) 9, 363, 423, 510, 804, 814, 839, 1287
MboI GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 2 cut(s) 508, 812
MmeI TCCRAC 1 cut(s) 1027
Mph1103I ATGCAT 2 cut(s) 68, 906
MseI TTAA 3 cut(s) 18, 513, 1139
MslI CAYNNNNRTG 5 cut(s) 383, 449, 771, 777, 1139
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 991
MspR9I CCNGG 3 cut(s) 107, 992, 1104
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 4 cut(s) 194, 221, 230, 355
MvaI CCWGG 2 cut(s) 107, 1104
MwoI GCNNNNNNNGC 3 cut(s) 45, 189, 225
NciI CCSGG 1 cut(s) 992
NcoI CCATGG 1 cut(s) 1370
NdeI CATATG 1 cut(s) 179
NdeII GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
NlaIV GGNNCC 2 cut(s) 414, 1076
NmuCI GTSAC 1 cut(s) 461
NsiI ATGCAT 2 cut(s) 68, 906
NspI RCATGY 1 cut(s) 553
OliI CACNNNNGTG 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 324
PctI GAATGC 4 cut(s) 194, 221, 230, 355
PfeI GAWTC 3 cut(s) 478, 939, 1061
PkrI GCNGC 2 cut(s) 90, 1384
Ppu21I YACGTR 1 cut(s) 461
PshBI ATTAAT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 105, 1102
PspGI CCWGG 2 cut(s) 105, 1102
PspN4I GGNNCC 2 cut(s) 414, 1076
PspPI GGNCC 3 cut(s) 137, 988, 1425
PstNI CAGNNNCTG 1 cut(s) 1382
PsuI RGATCY 2 cut(s) 508, 812
RsaI GTAC 2 cut(s) 290, 894
RsaNI GTAC 2 cut(s) 289, 893
RseI CAYNNNNRTG 5 cut(s) 383, 449, 771, 777, 1139
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 18, 513, 1139
SatI GCNGC 2 cut(s) 89, 1383
Sau3AI GATC 8 cut(s) 7, 361, 421, 508, 802, 812, 837, 1285
Sau96I GGNCC 3 cut(s) 137, 988, 1425
ScrFI CCNGG 3 cut(s) 107, 992, 1104
SfaNI GCATC 4 cut(s) 75, 673, 769, 891
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 2 cut(s) 137, 1425
SmiMI CAYNNNNRTG 5 cut(s) 383, 449, 771, 777, 1139
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SsiI CCGC 3 cut(s) 91, 410, 1262
SspMI CTAG 1 cut(s) 584
StyD4I CCNGG 3 cut(s) 105, 990, 1102
StyI CCWWGG 4 cut(s) 599, 634, 646, 1370
TaaI ACNGT 2 cut(s) 467, 1378
TaiI ACGT 2 cut(s) 290, 463
TaqI TCGA 2 cut(s) 801, 882
TatI WGTACW 1 cut(s) 892
TfiI GAWTC 3 cut(s) 478, 939, 1061
Tru1I TTAA 3 cut(s) 18, 513, 1139
Tru9I TTAA 3 cut(s) 18, 513, 1139
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 88, 1382
Tsp45I GTSAC 1 cut(s) 461
TspRI CASTG 1 cut(s) 711
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 137, 1425
VspI ATTAAT 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 1250
XapI RAATTY 4 cut(s) 100, 300, 322, 875
XceI RCATGY 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 2 cut(s) 442, 1168
XmiI GTMKAC 1 cut(s) 1328
XspI CTAG 1 cut(s) 584
Zsp2I ATGCAT 2 cut(s) 68, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.