RLG00000009933

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000417
Physical Location & Seq
Forward (+)
60493890 .. 60494948
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009933

Sequence Viewer

Length: 1059 bp
ATGATGATAGTTGACGGTTGCTTCCTAATTCAACTGTTTCGGAAGTGTAACGATCCGAAACTCAGGGCCTTTGATGACCCCGTGTTCAACATGGACTGTATGTTTCATTTCCTATGCCATGACATTTTGCTCCTAGAAAATCAATTACCTTGGTTTGTTATCCACAGTTTGTATAGCCTTATCATTGAAGAATACCCTAATCAAGCCTTCCTCTCTACTCTCATTCTTGAAGCCTTCAGCATGTTACCATCATTAAAGCAAATTTGCTCATCTTATAATAAGCATCTCCGCAGAAACAAGTGTTTTTGTGATGCTGATTATCTGCACATACTTGATCTGGTAAGAAATTCCATAGTAATTCCATCAGGGACCAAAGCGGCTGGAAAAGAATCTATGTCCAACCCTGAAGAACATGAAGTTGACTCTGGGAACAAACACGAGAGAAACAACAAAGTTGTTCATGAAGCTACCATTGACCCAGATTCACATCAAATTCGTACCGCAACCGCTCTCTCAAAGGCAGATATTAAATTCGAAAGCGTAGAAAAGGAGAGCATAATGGACATCCATTTCGAAACGGGCGGGTGTTTCAGGAATGGGATTCTTAAGATTCCACTGCTAAACGTTGGAATGTCATCGGAAACATTATTCAGGAACCTCATTGCAATCGAGCAATGCTACCATGGTTATTCAAACGAGGTTACATCTTATGCCATCTTTATGGATAACCTCATCTCTTCAAAGGAAGATATGGAATTACTTTGCAAGCAAAAAGTAATAGGTAACTTGATGAGTGATGAAGATGGTTGTAAGTTCTTCAGCAACCTTTACAAGGACATCCCGCACAACAAATTCTCGCACAACAAATTCTACTATAGTGCTCTTTGCAAGCAGGTGAATGATCGTTACCAACTGAGACGGTATACATGGTTGGCTTTACTCAAGATTGAAAAGTTTTCTAACCCCTGGAGAGTTTTGGCTTTCGGGATAGCTATTATCGCTTTGTTTCTCACCTCGTGGAGCTCGGCAAACAACATTCGGGTTAACTGGCATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

353

Amino Acids

40.75

Weight (kDa)

6.53

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 337 1.8e-71 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AarI CACCTGC 1 cut(s) 883
Acc36I ACCTGC 1 cut(s) 883
AccBSI CCGCTC 1 cut(s) 509
AccI GTMKAC 1 cut(s) 923
AciI CCGC 6 cut(s) 289, 377, 501, 507, 582, 842
AclI AACGTT 1 cut(s) 624
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 6 cut(s) 261, 346, 492, 530, 851, 866
AcuI CTGAAG 3 cut(s) 220, 426, 802
AdeI CACNNNGTG 1 cut(s) 1017
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 832
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 7 cut(s) 32, 88, 188, 230, 693, 741, 950
AjnI CCWGG 1 cut(s) 965
AluBI AGCT 3 cut(s) 467, 992, 1023
AluI AGCT 3 cut(s) 467, 992, 1023
Alw21I GWGCWC 2 cut(s) 883, 1025
Alw26I GTCTC 1 cut(s) 910
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 66
ApoI RAATTY 6 cut(s) 261, 346, 492, 530, 851, 866
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspS9I GGNCC 2 cut(s) 66, 369
AsuHPI GGTGA 2 cut(s) 907, 1003
AsuII TTCGAA 2 cut(s) 534, 573
AvaII GGWCC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 1025
BauI CACGAG 2 cut(s) 437, 1015
Bbv12I GWGCWC 2 cut(s) 883, 1025
BccI CCATC 4 cut(s) 256, 370, 722, 797
BciT130I CCWGG 1 cut(s) 967
BcoDI GTCTC 1 cut(s) 910
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 874
BfrI CTTAAG 1 cut(s) 605
BfuAI ACCTGC 1 cut(s) 883
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 967
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 66, 369
BmiI GGNNCC 2 cut(s) 370, 656
BmrFI CCNGG 1 cut(s) 967
BmsI GCATC 2 cut(s) 292, 301
BpmI CTGGAG 1 cut(s) 988
Bpu14I TTCGAA 2 cut(s) 534, 573
BpuEI CTTGAG 1 cut(s) 926
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 149, 682, 965
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse1I ACTGG 1 cut(s) 1052
Bse3DI GCAATG 2 cut(s) 660, 680
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 967
BseDI CCNNGG 3 cut(s) 149, 682, 965
BseGI GGATG 2 cut(s) 564, 837
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMI GCAATG 2 cut(s) 660, 680
BseMII CTCAG 2 cut(s) 76, 905
BseNI ACTGG 1 cut(s) 1052
BsgI GTGCAG 1 cut(s) 308
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 883, 1025
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 832
BsmAI GTCTC 1 cut(s) 910
BsmBI CGTCTC 1 cut(s) 910
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 1 cut(s) 68
Bsp119I TTCGAA 2 cut(s) 534, 573
Bsp1286I GDGCHC 2 cut(s) 883, 1025
Bsp143I GATC 3 cut(s) 52, 334, 901
Bsp19I CCATGG 1 cut(s) 682
BspACI CCGC 6 cut(s) 289, 377, 501, 507, 582, 842
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 2 cut(s) 75, 906
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 370, 656
BspMI ACCTGC 1 cut(s) 883
BspPI GGATC 1 cut(s) 47
BspT104I TTCGAA 2 cut(s) 534, 573
BspTI CTTAAG 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 660, 680
BsrI ACTGG 1 cut(s) 1052
BssECI CCNNGG 3 cut(s) 149, 682, 965
BssMI GATC 3 cut(s) 52, 334, 901
BssNAI GTATAC 1 cut(s) 924
BssSI CACGAG 2 cut(s) 437, 1015
BssT1I CCWWGG 2 cut(s) 149, 682
Bst1107I GTATAC 1 cut(s) 924
Bst2BI CACGAG 2 cut(s) 437, 1015
Bst2UI CCWGG 1 cut(s) 967
Bst4CI ACNGT 5 cut(s) 17, 36, 98, 167, 921
Bst6I CTCTTC 1 cut(s) 742
BstAFI CTTAAG 1 cut(s) 605
BstBI TTCGAA 2 cut(s) 534, 573
BstC8I GCNNGC 2 cut(s) 767, 890
BstDEI CTNAG 2 cut(s) 62, 914
BstDSI CCRYGG 1 cut(s) 682
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 2 cut(s) 564, 837
BstKTI GATC 3 cut(s) 55, 337, 904
BstMAI GTCTC 1 cut(s) 910
BstMBI GATC 3 cut(s) 52, 334, 901
BstMWI GCNNNNNNNGC 1 cut(s) 998
BstNI CCWGG 1 cut(s) 967
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 965
BstSFI CTRYAG 1 cut(s) 874
BstXI CCANNNNNNTGG 1 cut(s) 721
BstZ17I GTATAC 1 cut(s) 924
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 682
BtsCI GGATG 2 cut(s) 564, 837
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 1 cut(s) 614
BveI ACCTGC 1 cut(s) 883
Cac8I GCNNGC 2 cut(s) 767, 890
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 66, 369
Csp6I GTAC 1 cut(s) 498
CviAII CATG 7 cut(s) 91, 119, 241, 413, 461, 683, 927
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 2 cut(s) 62, 914
DpnI GATC 3 cut(s) 54, 336, 903
DpnII GATC 3 cut(s) 52, 334, 901
DraIII CACNNNGTG 1 cut(s) 1017
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Ecl136II GAGCTC 1 cut(s) 1023
Eco130I CCWWGG 2 cut(s) 149, 682
Eco24I GRGCYC 1 cut(s) 1025
Eco47I GGWCC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 1023
Eco57I CTGAAG 3 cut(s) 220, 426, 802
EcoICRI GAGCTC 1 cut(s) 1023
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 965
EcoT14I CCWWGG 2 cut(s) 149, 682
EcoT38I GRGCYC 1 cut(s) 1025
ErhI CCWWGG 2 cut(s) 149, 682
Esp3I CGTCTC 1 cut(s) 910
FaeI CATG 7 cut(s) 94, 122, 244, 416, 464, 686, 930
FaqI GGGAC 1 cut(s) 382
FatI CATG 7 cut(s) 90, 118, 240, 412, 460, 682, 926
FauI CCCGC 2 cut(s) 575, 849
FblI GTMKAC 1 cut(s) 923
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 551, 824
FriOI GRGCYC 1 cut(s) 1025
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 134
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 988
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 7 cut(s) 94, 122, 244, 416, 464, 686, 930
HincII GTYRAC 3 cut(s) 13, 421, 1045
HindII GTYRAC 3 cut(s) 13, 421, 1045
HinfI GANTC 5 cut(s) 389, 422, 482, 601, 610
HpaI GTTAAC 1 cut(s) 1045
HphI GGTGA 2 cut(s) 907, 1003
Hpy166II GTNNAC 4 cut(s) 13, 421, 924, 1045
Hpy188I TCNGA 3 cut(s) 42, 57, 640
Hpy188III TCNNGA 6 cut(s) 227, 461, 592, 652, 943, 985
Hpy8I GTNNAC 4 cut(s) 13, 421, 924, 1045
HpyAV CCTTC 2 cut(s) 217, 244
HpyCH4III ACNGT 5 cut(s) 17, 36, 98, 167, 921
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 4 cut(s) 325, 665, 765, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 998
HpyF3I CTNAG 2 cut(s) 62, 914
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 7 cut(s) 94, 122, 244, 416, 464, 686, 930
KspAI GTTAAC 1 cut(s) 1045
Kzo9I GATC 3 cut(s) 52, 334, 901
LmnI GCTCC 2 cut(s) 135, 1020
LweI GCATC 2 cut(s) 292, 301
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 5 cut(s) 47, 243, 700, 782, 905
MalI GATC 3 cut(s) 54, 336, 903
MbiI CCGCTC 1 cut(s) 509
MboI GATC 3 cut(s) 52, 334, 901
MboII GAAGA 6 cut(s) 200, 419, 729, 758, 808, 812
MhlI GDGCHC 2 cut(s) 883, 1025
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 423, 607
MnlI CCTC 5 cut(s) 221, 668, 691, 740, 1024
MseI TTAA 4 cut(s) 254, 528, 606, 1044
MslI CAYNNNNRTG 1 cut(s) 719
MspCI CTTAAG 1 cut(s) 605
MspR9I CCNGG 1 cut(s) 967
MvaI CCWGG 1 cut(s) 967
MwoI GCNNNNNNNGC 1 cut(s) 998
NcoI CCATGG 1 cut(s) 682
NdeII GATC 3 cut(s) 52, 334, 901
NlaIII CATG 7 cut(s) 94, 122, 244, 416, 464, 686, 930
NlaIV GGNNCC 2 cut(s) 370, 656
NmeAIII GCCGAG 1 cut(s) 1004
NspI RCATGY 1 cut(s) 244
NspV TTCGAA 2 cut(s) 534, 573
PagI TCATGA 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 883
PfeI GAWTC 4 cut(s) 389, 482, 601, 610
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PsiI TTATAA 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 1025
Psp1406I AACGTT 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 965
PspGI CCWGG 1 cut(s) 965
PspN4I GGNNCC 2 cut(s) 370, 656
PspPI GGNCC 2 cut(s) 66, 369
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 719
SacI GAGCTC 1 cut(s) 1025
SaqAI TTAA 4 cut(s) 254, 528, 606, 1044
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 52, 334, 901
Sau96I GGNCC 2 cut(s) 66, 369
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 967
SduI GDGCHC 2 cut(s) 883, 1025
SfaNI GCATC 2 cut(s) 292, 301
SfcI CTRYAG 1 cut(s) 874
SfuI TTCGAA 2 cut(s) 534, 573
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 2 cut(s) 605, 941
SmoI CTYRAG 2 cut(s) 605, 941
SsiI CCGC 6 cut(s) 289, 377, 501, 507, 582, 842
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 1025
StyD4I CCNGG 1 cut(s) 965
StyI CCWWGG 2 cut(s) 149, 682
TaaI ACNGT 5 cut(s) 17, 36, 98, 167, 921
TaiI ACGT 1 cut(s) 627
TaqI TCGA 3 cut(s) 534, 573, 669
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 4 cut(s) 389, 482, 601, 610
Tru1I TTAA 4 cut(s) 254, 528, 606, 1044
Tru9I TTAA 4 cut(s) 254, 528, 606, 1044
TscAI CASTG 1 cut(s) 621
TspDTI ATGAA 5 cut(s) 95, 429, 449, 477, 813
TspRI CASTG 1 cut(s) 621
Vha464I CTTAAG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 369
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 6 cut(s) 261, 346, 492, 530, 851, 866
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 923
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.