Rmu_sc0001471.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001471.1
OG0000417
Physical Location & Seq
Reverse (-)
21353 .. 22144
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001471.1_g000010.1.cds

Sequence Viewer

Length: 792 bp
atgatatctgttactgtgggcgacatcatactgttatatatagatgtgaatgaccgcgggcactgcatcttcagggttcctagggtgctccgctcacaaaacccagaggcatattcacctcatgttgtctcaatcggaccatttcatcatcatcgaggagaggatggaggccaggacgaaggcaaagaagacagagaaggcaacaaagaagaatttcaactcatgcaagcagtgaaagagaggtatttgaatgaaattcgttcaagcatgaataatataaccatggaaaagttgaccgaaaaagttattgagctatctcatcaaaagaatgaagccaatttggataaattcgtccgcaatttttatgcaaaatcatttaaatccgaattagccttcatgaagatgatgatagttgacggttgtttcctcattcaactgtttaggaggtgtaatcattgggccaaacgtttattgggcttcaagttaggtactactccactaacttatctgggtgttcctatattcaaggggaagcctcgacgtatacaccttcaagcaactgctgataaggctaaatctcgtcttgttggctggcaaggcaagttgttgtccatggcggggcgtgttcagttggttcatgatgtatttcagagttcgctaattcatagtttctctgtgtacttgtggccttcttcactattgaaacacttgtctacatgtgctcgaaactgtagattaagcaacttgcatgcgttagattcagaggctttgctctatagaagcaggagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

263

Amino Acids

30.24

Weight (kDa)

9.59

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 2 cut(s) 544, 713
AccII CGCG 1 cut(s) 57
AciI CCGC 5 cut(s) 55, 57, 91, 355, 617
AclI AACGTT 1 cut(s) 466
AcsI RAATTY 3 cut(s) 212, 255, 347
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 2 cut(s) 490, 680
AfiI CCNNNNNNNGG 1 cut(s) 618
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 8 cut(s) 218, 250, 264, 434, 481, 526, 554, 703
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw21I GWGCWC 2 cut(s) 90, 724
Alw26I GTCTC 1 cut(s) 133
AoxI GGCC 3 cut(s) 169, 459, 686
ApoI RAATTY 3 cut(s) 212, 255, 347
Asp700I GAANNNNTTC 1 cut(s) 213
AspA2I CCTAGG 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 137, 459
AsuHPI GGTGA 1 cut(s) 108
AvaII GGWCC 1 cut(s) 137
AvrII CCTAGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 2 cut(s) 90, 724
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 2 cut(s) 730, 775
BlnI CCTAGG 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 137, 459
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 55, 80, 282, 612
Bsc4I CCNNNNNNNGG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 4 cut(s) 55, 80, 282, 612
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 618
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 171, 461, 688
BsiHKAI GWGCWC 2 cut(s) 90, 724
BslI CCNNNNNNNGG 1 cut(s) 618
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 3 cut(s) 171, 461, 688
Bsp1286I GDGCHC 3 cut(s) 63, 90, 724
Bsp19I CCATGG 2 cut(s) 282, 612
BspACI CCGC 5 cut(s) 55, 57, 91, 355, 617
BspANI GGCC 3 cut(s) 171, 461, 688
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 2 cut(s) 396, 637
BspLI GGNNCC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 93
BssECI CCNNGG 4 cut(s) 55, 80, 282, 612
BssNAI GTATAC 1 cut(s) 545
BssT1I CCWWGG 3 cut(s) 80, 282, 612
Bst1107I GTATAC 1 cut(s) 545
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 5 cut(s) 16, 33, 419, 438, 731
BstC8I GCNNGC 4 cut(s) 59, 228, 593, 750
BstDSI CCRYGG 3 cut(s) 55, 282, 612
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 57
BstMAI GTCTC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 63, 569, 597
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 2 cut(s) 720, 752
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 2 cut(s) 730, 775
BstSLI GKGCMC 1 cut(s) 63
BstUI CGCG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 545
BsuRI GGCC 3 cut(s) 171, 461, 688
BtgI CCRYGG 3 cut(s) 55, 282, 612
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 2 cut(s) 61, 237
BtsIMutI CAGTG 2 cut(s) 61, 237
Cac8I GCNNGC 4 cut(s) 59, 228, 593, 750
CciI TCATGA 2 cut(s) 396, 637
Cfr13I GGNCC 2 cut(s) 137, 459
Cfr42I CCGCGG 1 cut(s) 58
Csp6I GTAC 2 cut(s) 489, 679
CviAII CATG 9 cut(s) 122, 223, 268, 283, 397, 613, 638, 717, 749
CviQI GTAC 2 cut(s) 489, 679
DraI TTTAAA 1 cut(s) 379
Eco130I CCWWGG 3 cut(s) 80, 282, 612
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 3 cut(s) 80, 282, 612
ErhI CCWWGG 3 cut(s) 80, 282, 612
FaeI CATG 9 cut(s) 125, 226, 271, 286, 400, 616, 641, 720, 752
FatI CATG 9 cut(s) 121, 222, 267, 282, 396, 612, 637, 716, 748
FauI CCCGC 2 cut(s) 50, 610
FblI GTMKAC 2 cut(s) 544, 713
FokI GGATG 1 cut(s) 176
FspBI CTAG 1 cut(s) 81
HaeIII GGCC 3 cut(s) 171, 461, 688
Hin1II CATG 9 cut(s) 125, 226, 271, 286, 400, 616, 641, 720, 752
HincII GTYRAC 2 cut(s) 294, 415
HindII GTYRAC 2 cut(s) 294, 415
HinfI GANTC 1 cut(s) 758
HphI GGTGA 1 cut(s) 108
Hpy166II GTNNAC 5 cut(s) 294, 415, 545, 679, 714
Hpy188I TCNGA 4 cut(s) 137, 385, 651, 763
Hpy188III TCNNGA 2 cut(s) 397, 638
Hpy8I GTNNAC 5 cut(s) 294, 415, 545, 679, 714
Hpy99I CGWCG 1 cut(s) 543
HpyAV CCTTC 5 cut(s) 173, 191, 403, 560, 699
HpyCH4III ACNGT 5 cut(s) 16, 33, 419, 438, 731
HpyCH4IV ACGT 2 cut(s) 466, 541
HpyCH4V TGCA 4 cut(s) 66, 226, 368, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 569, 597
HpySE526I ACGT 2 cut(s) 466, 541
Hsp92II CATG 9 cut(s) 125, 226, 271, 286, 400, 616, 641, 720, 752
KspI CCGCGG 1 cut(s) 58
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 7 cut(s) 58, 117, 158, 185, 494, 577, 769
LweI GCATC 1 cut(s) 75
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 466, 541
MaeIII GTNAC 1 cut(s) 10
MbiI CCGCTC 1 cut(s) 93
MboII GAAGA 5 cut(s) 61, 200, 221, 412, 684
MhlI GDGCHC 3 cut(s) 63, 90, 724
MluCI AATT 7 cut(s) 212, 255, 337, 347, 358, 386, 660
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 2 cut(s) 378, 737
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 63, 569, 597
NcoI CCATGG 2 cut(s) 282, 612
NlaIII CATG 9 cut(s) 125, 226, 271, 286, 400, 616, 641, 720, 752
NlaIV GGNNCC 1 cut(s) 78
NspI RCATGY 2 cut(s) 720, 752
PaeI GCATGC 1 cut(s) 752
PagI TCATGA 2 cut(s) 396, 637
PciI ACATGT 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 758
PscI ACATGT 1 cut(s) 716
Psp1406I AACGTT 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 137, 459
RsaI GTAC 2 cut(s) 490, 680
RsaNI GTAC 2 cut(s) 489, 679
RseI CAYNNNNRTG 1 cut(s) 401
SacII CCGCGG 1 cut(s) 58
SaqAI TTAA 2 cut(s) 378, 737
Sau96I GGNCC 2 cut(s) 137, 459
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 3 cut(s) 63, 90, 724
SetI ASST 8 cut(s) 121, 245, 315, 449, 469, 490, 544, 552
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 2 cut(s) 730, 775
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SinI GGWCC 1 cut(s) 137
SmiI ATTTAAAT 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 401
SphI GCATGC 1 cut(s) 752
Sse9I AATT 7 cut(s) 212, 255, 337, 347, 358, 386, 660
SsiI CCGC 5 cut(s) 55, 57, 91, 355, 617
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 3 cut(s) 80, 282, 612
SwaI ATTTAAAT 1 cut(s) 379
TaaI ACNGT 5 cut(s) 16, 33, 419, 438, 731
TaiI ACGT 2 cut(s) 469, 544
TaqI TCGA 3 cut(s) 154, 538, 724
TaqII GACCGA 1 cut(s) 311
TasI AATT 7 cut(s) 212, 255, 337, 347, 358, 386, 660
TatI WGTACW 1 cut(s) 678
TfiI GAWTC 1 cut(s) 758
Tru1I TTAA 2 cut(s) 378, 737
Tru9I TTAA 2 cut(s) 378, 737
TscAI CASTG 2 cut(s) 68, 237
TspDTI ATGAA 8 cut(s) 134, 267, 284, 345, 385, 413, 626, 653
TspRI CASTG 2 cut(s) 68, 237
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 3 cut(s) 212, 255, 347
XceI RCATGY 2 cut(s) 720, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmaJI CCTAGG 1 cut(s) 80
XmiI GTMKAC 2 cut(s) 544, 713
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.