Rroxscaffold_5G00336370

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000417
Physical Location & Seq
Reverse (-)
4186177 .. 4187397
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336370.1

Sequence Viewer

Length: 1221 bp
ATGCGAGGAATGCAAATTATGCAAAAAAAGCAAGAAAGGCAAGGCAATGAAGAAGAATTTCAACTCATGGAACGAGTGAAAGAGAGCTATTTAAATGATGTGCTTAAAGGCATGATGATTCCAACCGAAACGTTGATTGCAAAGGTTATTGAGCTTTCAGATCAAAAGAATGAAGGCACTATTGGGTTTGAGCAACGTGCCCGTGGCTTCTATGCAGAGCCACTACTTGATATTCCCTGCGAAGAATTCATCAAGATGATGATAGTTGACGGTTGCTTCCTCATTCAACTATTTCGGAAGTGTAATGATCCGACACTTAGGGATATTGAAGATCCGGTATTCAACATGGATTGCATGTTCCATTTCCTATGTCATGACCTTTTGCTCCTAGAAAATCAACTACCTTGGTTTGTTCTTGAGAGTTTATACTGCCTTATCCTTGGAAATTGCTGCAATCATCAACCCTCCCTCGCTTTTCTCATCCTCGAAGCCTTCATCACATTACCATCACTAAAGCGTAGTTGCAATTCCTATAAACAACATATTAGTTCATGTTACGGTAACAATGGTGATGATGTTTTGCACATACTTGATCTGGCAAGATCTTCGATTGTTATTCCATCAAAGGTCAAAGCCGGGAAAGAAAACAAAGTTCACGAGGCAATGTTTGACCCAGAAATACATGAAATGCATACGGCGACGGCTCTCTCAAAGGCCGGGATCAAATTCAAAGGTGTCAAAAGTGAACGCATAATGGACATACAATTCGAAAACGGACTTTTTACTTTTCCACAGCTAAACATTGGTACGCTGGCCGACTCATTGTTCAGGAACCTGATTGCTTTTGAGCAGTGCTACGATGGTTATTCAAACGAAATTACATCTTTTGCCATTTTAATGGATAACCTCATCTCTTCCAATGAAGACATGGAATTACTTTGCAAGGCAAAAGTAATAGGTAACTGGCTGAGCGAGGAAGATGTTTGCAAGTTCTTCAACAACCTTTACAAGGGCATCCCGCACAACAAGTTCTACTATGTCCATCTCTGCAAGCTAGTCAACGAGCATTACAGAATCAGATGGCATACATATCTGGCTTCGTTGAAGATTGAAAAGTTCTCTAATCCCTGGAAAATTATTGCTTTCTTCGTAGCTATTGTCCTTCTGGGTCTTAGCATATGGACCTCCACGAATAACATTCGGACCTTCATGCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

406

Amino Acids

47.02

Weight (kDa)

5.88

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 17 - 389 1.2e-87 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000417)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32770 FvH4_4g02520 FvH4_4g02520 FvH4_4g02530 FvH4_4g02550 FvH4_4g17730 FvH4_4g17730
rosa_chinensis RchiOBHm_Chr1g0318801 RchiOBHm_Chr4g0390011 RchiOBHm_Chr4g0390031 RchiOBHm_Chr4g0390041 RchiOBHm_Chr4g0390061 RchiOBHm_Chr4g0390091 RchiOBHm_Chr4g0390101 RchiOBHm_Chr4g0390141 RchiOBHm_Chr4g0390181 RchiOBHm_Chr4g0390191 RchiOBHm_Chr4g0390201 RchiOBHm_Chr4g0390231 RchiOBHm_Chr4g0390241 RchiOBHm_Chr4g0390251 RchiOBHm_Chr4g0390661 RchiOBHm_Chr4g0390711 RchiOBHm_Chr4g0390741 RchiOBHm_Chr4g0390771 RchiOBHm_Chr4g0390801 RchiOBHm_Chr5g0058271
rosa_laevigata RLG00000008685 RLG00000009910 RLG00000009930 RLG00000009932 RLG00000009933 RLG00000009934 RLG00000009935 RLG00000009937 RLG00000009938 RLG00000009940 RLG00000035208 RLG00000035209
rosa_multiflora Rmu_co8281525.1_g000001 Rmu_co8464925.1_g000001 Rmu_sc0000171.1_g000023 Rmu_sc0000171.1_g000027 Rmu_sc0000367.1_g000061 Rmu_sc0000679.1_g000027 Rmu_sc0001380.1_g000026 Rmu_sc0001380.1_g000030 Rmu_sc0001471.1_g000010 Rmu_sc0003643.1_g000007 Rmu_sc0004336.1_g000002 Rmu_sc0004336.1_g000011 Rmu_sc0004336.1_g000012 Rmu_sc0005003.1_g000007 Rmu_sc0005003.1_g000012 Rmu_sc0005003.1_g000016 Rmu_sc0005003.1_g000022 Rmu_sc0008322.1_g000002 Rmu_sc0011197.1_g000004 Rmu_sc0014620.1_g000006 Rmu_sc0014620.1_g000017 Rmu_sc0018617.1_g000002
rosa_roxburghii Rroxscaffold_1G00022270 Rroxscaffold_5G00336180 Rroxscaffold_5G00336220 Rroxscaffold_5G00336240 Rroxscaffold_5G00336250 Rroxscaffold_5G00336290 Rroxscaffold_5G00336310 Rroxscaffold_5G00336350 Rroxscaffold_5G00336370 Rroxscaffold_5G00336670 Rroxscaffold_5G00336700 Rroxscaffold_5G00336710
rosa_rugosa Rorug01G0020300 Rorug03G0327700 Rorug03G0327800 Rorug03G0328000 Rorug03G0328100 Rorug03G0328300 Rorug03G0328600 Rorug03G0328600 Rorug03G0331700 Rorug03G0331800 Rorug05G0312900
rosa_samantha Rh4DG024700 Rh4DG024900 Rh4DG025000 Rh4DG025200 Rh4DG025500 Rh4DG025900 Rh4DG026200 Rh4DG030200 Rh5DG407000
rosa_wichuraiana Rw4G002360 Rw4G002410 Rw4G002420 Rw4G002450 Rw4G002480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1019
AclI AACGTT 1 cut(s) 131
AclWI GGATC 3 cut(s) 302, 326, 728
AcoI YGGCCR 1 cut(s) 813
AcsI RAATTY 3 cut(s) 56, 245, 725
AfaI GTAC 1 cut(s) 808
AfiI CCNNNNNNNGG 1 cut(s) 1009
AgsI TTSAA 9 cut(s) 62, 287, 329, 343, 730, 870, 997, 1105, 1112
AjnI CCWGG 1 cut(s) 1127
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 5 cut(s) 87, 154, 796, 1054, 1154
AluI AGCT 5 cut(s) 87, 154, 796, 1054, 1154
AlwI GGATC 3 cut(s) 302, 326, 728
AoxI GGCC 2 cut(s) 714, 813
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 3 cut(s) 56, 245, 725
ArsI GACNNNNNNTTYG 2 cut(s) 749, 781
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 1182, 1203
AsuC2I CCSGG 2 cut(s) 637, 718
AsuHPI GGTGA 1 cut(s) 581
AsuII TTCGAA 1 cut(s) 768
AvaII GGWCC 2 cut(s) 1182, 1203
BaeGI GKGCMC 1 cut(s) 202
BauI CACGAG 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 930
BbvI GCAGC 1 cut(s) 437
BccI CCATC 5 cut(s) 514, 628, 854, 1050, 1074
BceAI ACGGC 2 cut(s) 711, 717
BcgI CGANNNNNNTGC 2 cut(s) 588, 622
BciT130I CCWGG 1 cut(s) 1129
BcnI CCSGG 2 cut(s) 637, 718
BfaI CTAG 2 cut(s) 389, 1055
BglII AGATCT 1 cut(s) 602
BisI GCNGC 1 cut(s) 451
BlpI GCTNAGC 1 cut(s) 968
BlsI GCNGC 1 cut(s) 452
Bme1390I CCNGG 3 cut(s) 637, 718, 1129
Bme18I GGWCC 2 cut(s) 1182, 1203
BmgT120I GGNCC 2 cut(s) 1182, 1203
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 3 cut(s) 637, 718, 1129
BmsI GCATC 1 cut(s) 1023
BpiI GAAGAC 1 cut(s) 930
Bpu1102I GCTNAGC 1 cut(s) 968
Bpu14I TTCGAA 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 2 cut(s) 637, 718
BsaJI CCNNGG 4 cut(s) 202, 404, 439, 1127
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 1 cut(s) 1009
Bse1I ACTGG 1 cut(s) 968
Bse3DI GCAATG 2 cut(s) 52, 669
BseBI CCWGG 1 cut(s) 1129
BseDI CCNNGG 4 cut(s) 202, 404, 439, 1127
BseGI GGATG 2 cut(s) 480, 1014
BseLI CCNNNNNNNGG 1 cut(s) 1009
BseMI GCAATG 2 cut(s) 52, 669
BseMII CTCAG 1 cut(s) 959
BseNI ACTGG 1 cut(s) 968
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 1 cut(s) 437
BshFI GGCC 2 cut(s) 716, 815
BsiSI CCGG 3 cut(s) 335, 636, 717
BslI CCNNNNNNNGG 1 cut(s) 1009
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 2 cut(s) 716, 815
Bsp119I TTCGAA 1 cut(s) 768
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 6 cut(s) 160, 307, 331, 592, 602, 720
Bsp1720I GCTNAGC 1 cut(s) 968
BspACI CCGC 1 cut(s) 1019
BspANI GGCC 2 cut(s) 716, 815
BspCNI CTCAG 1 cut(s) 960
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 833
BspPI GGATC 3 cut(s) 302, 326, 728
BspT104I TTCGAA 1 cut(s) 768
BsrDI GCAATG 2 cut(s) 52, 669
BsrI ACTGG 1 cut(s) 968
BssECI CCNNGG 4 cut(s) 202, 404, 439, 1127
BssMI GATC 6 cut(s) 160, 307, 331, 592, 602, 720
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 2 cut(s) 404, 439
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 1 cut(s) 1129
Bst4CI ACNGT 2 cut(s) 272, 560
Bst6I CTCTTC 1 cut(s) 919
BstAPI GCANNNNNTGC 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 768
BstC8I GCNNGC 2 cut(s) 813, 1052
BstDEI CTNAG 3 cut(s) 317, 968, 1172
BstDSI CCRYGG 1 cut(s) 202
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstF5I GGATG 2 cut(s) 480, 1014
BstKTI GATC 6 cut(s) 163, 310, 334, 595, 605, 723
BstMBI GATC 6 cut(s) 160, 307, 331, 592, 602, 720
BstMWI GCNNNNNNNGC 4 cut(s) 10, 19, 28, 37
BstNI CCWGG 1 cut(s) 1129
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 635, 716, 1127
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 2 cut(s) 331, 602
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 2 cut(s) 331, 602
BsuRI GGCC 2 cut(s) 716, 815
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 480, 1014
BtsI GCAGTG 1 cut(s) 857
BtsIMutI CAGTG 1 cut(s) 857
Cac8I GCNNGC 2 cut(s) 813, 1052
CciI TCATGA 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 1182, 1203
Csp6I GTAC 1 cut(s) 807
CviAII CATG 9 cut(s) 67, 112, 346, 355, 374, 552, 683, 928, 1210
CviQI GTAC 1 cut(s) 807
DdeI CTNAG 3 cut(s) 317, 968, 1172
DpnI GATC 6 cut(s) 162, 309, 333, 594, 604, 722
DpnII GATC 6 cut(s) 160, 307, 331, 592, 602, 720
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 813
Eam1104I CTCTTC 1 cut(s) 919
EarI CTCTTC 1 cut(s) 919
Eco130I CCWWGG 2 cut(s) 404, 439
Eco47I GGWCC 2 cut(s) 1182, 1203
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 1127
EcoT14I CCWWGG 2 cut(s) 404, 439
EcoT22I ATGCAT 1 cut(s) 693
ErhI CCWWGG 2 cut(s) 404, 439
FaeI CATG 9 cut(s) 70, 115, 349, 358, 377, 555, 686, 931, 1213
FatI CATG 9 cut(s) 66, 111, 345, 354, 373, 551, 682, 927, 1209
FauI CCCGC 1 cut(s) 1026
FauNDI CATATG 1 cut(s) 1178
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 2 cut(s) 467, 1001
Fsp4HI GCNGC 1 cut(s) 451
FspBI CTAG 2 cut(s) 389, 1055
GluI GCNGC 1 cut(s) 451
HaeIII GGCC 2 cut(s) 716, 815
HapII CCGG 3 cut(s) 335, 636, 717
Hin1II CATG 9 cut(s) 70, 115, 349, 358, 377, 555, 686, 931, 1213
HincII GTYRAC 2 cut(s) 268, 1060
HindII GTYRAC 2 cut(s) 268, 1060
HinfI GANTC 3 cut(s) 118, 818, 1074
HpaII CCGG 3 cut(s) 335, 636, 717
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 4 cut(s) 268, 655, 746, 1060
Hpy188I TCNGA 5 cut(s) 160, 297, 312, 1079, 1203
Hpy188III TCNNGA 5 cut(s) 253, 374, 416, 656, 829
Hpy8I GTNNAC 4 cut(s) 268, 655, 746, 1060
Hpy99I CGWCG 1 cut(s) 703
HpyAV CCTTC 4 cut(s) 167, 502, 1172, 1216
HpyCH4III ACNGT 2 cut(s) 272, 560
HpyCH4IV ACGT 2 cut(s) 131, 196
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 19, 28, 37
HpyF3I CTNAG 3 cut(s) 317, 968, 1172
HpySE526I ACGT 2 cut(s) 131, 196
Hsp92II CATG 9 cut(s) 70, 115, 349, 358, 377, 555, 686, 931, 1213
Kzo9I GATC 6 cut(s) 160, 307, 331, 592, 602, 720
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 1023
MaeI CTAG 2 cut(s) 389, 1055
MaeII ACGT 2 cut(s) 131, 196
MaeIII GTNAC 3 cut(s) 554, 560, 959
MalI GATC 6 cut(s) 162, 309, 333, 594, 604, 722
MboI GATC 6 cut(s) 160, 307, 331, 592, 602, 720
MflI RGATCY 2 cut(s) 331, 602
MhlI GDGCHC 1 cut(s) 202
MlyI GAGTC 1 cut(s) 812
MmeI TCCRAC 2 cut(s) 146, 335
MnlI CCTC 8 cut(s) 290, 475, 479, 494, 652, 917, 967, 1195
Mph1103I ATGCAT 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 3 cut(s) 92, 105, 896
MslI CAYNNNNRTG 2 cut(s) 254, 896
MspI CCGG 3 cut(s) 335, 636, 717
MspR9I CCNGG 3 cut(s) 637, 718, 1129
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 1 cut(s) 1129
MwoI GCNNNNNNNGC 4 cut(s) 10, 19, 28, 37
NciI CCSGG 2 cut(s) 637, 718
NdeI CATATG 1 cut(s) 1178
NdeII GATC 6 cut(s) 160, 307, 331, 592, 602, 720
NlaIII CATG 9 cut(s) 70, 115, 349, 358, 377, 555, 686, 931, 1213
NlaIV GGNNCC 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 693
NspI RCATGY 1 cut(s) 358
NspV TTCGAA 1 cut(s) 768
PagI TCATGA 1 cut(s) 373
PctI GAATGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 118, 1074
PkrI GCNGC 1 cut(s) 452
PleI GAGTC 1 cut(s) 812
PpsI GAGTC 1 cut(s) 812
Psp1406I AACGTT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 1127
PspGI CCWGG 1 cut(s) 1127
PspN4I GGNNCC 1 cut(s) 833
PspPI GGNCC 2 cut(s) 1182, 1203
PsuI RGATCY 2 cut(s) 331, 602
RsaI GTAC 1 cut(s) 808
RsaNI GTAC 1 cut(s) 807
RseI CAYNNNNRTG 2 cut(s) 254, 896
SaqAI TTAA 3 cut(s) 92, 105, 896
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 6 cut(s) 160, 307, 331, 592, 602, 720
Sau96I GGNCC 2 cut(s) 1182, 1203
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 3 cut(s) 637, 718, 1129
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 1 cut(s) 1023
SfuI TTCGAA 1 cut(s) 768
SinI GGWCC 2 cut(s) 1182, 1203
SmiI ATTTAAAT 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 254, 896
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SsiI CCGC 1 cut(s) 1019
SspMI CTAG 2 cut(s) 389, 1055
StyD4I CCNGG 3 cut(s) 635, 716, 1127
StyI CCWWGG 2 cut(s) 404, 439
SwaI ATTTAAAT 1 cut(s) 93
TaaI ACNGT 2 cut(s) 272, 560
TaiI ACGT 2 cut(s) 134, 199
TaqI TCGA 3 cut(s) 486, 608, 768
TfiI GAWTC 2 cut(s) 118, 1074
Tru1I TTAA 3 cut(s) 92, 105, 896
Tru9I TTAA 3 cut(s) 92, 105, 896
TscAI CASTG 1 cut(s) 857
TseI GCWGC 1 cut(s) 450
TspDTI ATGAA 8 cut(s) 63, 186, 238, 484, 540, 699, 936, 1198
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 1 cut(s) 857
VpaK11BI GGWCC 2 cut(s) 1182, 1203
XagI CCTNNNNNAGG 1 cut(s) 1007
XapI RAATTY 3 cut(s) 56, 245, 725
XceI RCATGY 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 925
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 389, 1055
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.