FvH4_5g11130

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000408
Physical Location & Seq
Reverse (-)
6286023 .. 6286851
829 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11130.t1

Sequence Viewer

Length: 645 bp
ATGTCAAGCAAAGTAAAAGGGAAGGCGGCTTTGAATATCAGGTTGCTGGTGAATATGAACTTCCATCATTTGCCGGATGGACTTGCACTGGAACGTGAAGATCAGTCTGATGCATACAACAATGCATCATTGGGAGAAGTACAGATTAATCATGAAGCTGAATTGGATATGCATGTGAGCAACTTGAAGAGGAAGCTTTTGTATGATGGTCACTTGGCCCTTGTGCTGACAGGTCCTGAACGATGTGGGAAAACTAGACTGGCAGAAAAGTTTTGTCAAGATGAGGAAGTGAAAGATGAGTTCAAGAACAACATCTTCTGCGTACCTGTTTCACTCAACCCAAGTTTAGACCTTATTGTTCAACAACTATATCCAGAAGAGGGCTGCTGGGAGATTGCGTTGCCAGATAAAAATGGAGTTCATGCAATTCAGTGGCTGCAAGCATTTGCGAAGCATGTAGGACATCGTCGTTCTCTGTTGGTACTAGATGATGTCTGGCCTGGATCTGAATCCCTTCTTGATGAGTTTGATGAATTCAAAAGGTCAAATTTCAAGATTCTGGTGACATCAAGATTCGAATTTCCAAGATTTGGTTCCTCCTATTATGTAATGACAGGTGATGTAGGGAAGGCCAGAATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

215

Amino Acids

24.42

Weight (kDa)

5.76

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 57 - 191 1.1e-08 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 590
AciI CCGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 511
AcsI RAATTY 3 cut(s) 533, 547, 578
AfaI GTAC 3 cut(s) 141, 324, 483
AfiI CCNNNNNNNGG 2 cut(s) 380, 590
AgsI TTSAA 6 cut(s) 34, 187, 304, 362, 538, 553
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 577, 609
AluBI AGCT 2 cut(s) 158, 196
AluI AGCT 2 cut(s) 158, 196
AlwI GGATC 1 cut(s) 511
AlwNI CAGNNNCTG 2 cut(s) 236, 436
AoxI GGCC 3 cut(s) 216, 497, 630
ApeKI GCWGC 2 cut(s) 384, 436
ApoI RAATTY 3 cut(s) 533, 547, 578
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 513
AspS9I GGNCC 2 cut(s) 217, 233
AsuHPI GGTGA 3 cut(s) 61, 574, 629
AsuII TTCGAA 1 cut(s) 576
AvaII GGWCC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 371, 423
BccI CCATC 3 cut(s) 71, 72, 200
BciT130I CCWGG 1 cut(s) 501
BfaI CTAG 2 cut(s) 255, 485
BisI GCNGC 3 cut(s) 27, 385, 437
BlsI GCNGC 3 cut(s) 28, 386, 438
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 217, 233
BmiI GGNNCC 1 cut(s) 595
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 100, 134
Bpu14I TTCGAA 1 cut(s) 576
BsaBI GATNNNNATC 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 590
Bse1I ACTGG 2 cut(s) 93, 264
Bse8I GATNNNNATC 1 cut(s) 508
BseBI CCWGG 1 cut(s) 501
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 380, 590
BseNI ACTGG 2 cut(s) 93, 264
BseXI GCAGC 2 cut(s) 371, 423
BseYI CCCAGC 1 cut(s) 387
BshFI GGCC 3 cut(s) 218, 499, 632
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 380, 590
BsnI GGCC 3 cut(s) 218, 499, 632
Bsp119I TTCGAA 1 cut(s) 576
Bsp143I GATC 2 cut(s) 100, 503
BspACI CCGC 1 cut(s) 26
BspANI GGCC 3 cut(s) 218, 499, 632
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 595
BspPI GGATC 1 cut(s) 511
BspT104I TTCGAA 1 cut(s) 576
BsrI ACTGG 2 cut(s) 93, 264
BssMI GATC 2 cut(s) 100, 503
Bst2UI CCWGG 1 cut(s) 501
Bst6I CTCTTC 2 cut(s) 182, 372
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 441
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 103, 506
BstMBI GATC 2 cut(s) 100, 503
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 2 cut(s) 176, 458
BstSCI CCNGG 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 371, 423
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 3 cut(s) 218, 499, 632
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 86, 437
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 2 cut(s) 236, 436
CciI TCATGA 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 217, 233
Csp6I GTAC 3 cut(s) 140, 323, 482
CviAII CATG 4 cut(s) 152, 173, 422, 455
CviJI RGCY 8 cut(s) 29, 158, 196, 218, 384, 436, 499, 632
CviKI_1 RGCY 8 cut(s) 29, 158, 196, 218, 384, 436, 499, 632
CviQI GTAC 3 cut(s) 140, 323, 482
DpnI GATC 2 cut(s) 102, 505
DpnII GATC 2 cut(s) 100, 503
Eam1104I CTCTTC 2 cut(s) 182, 372
EarI CTCTTC 2 cut(s) 182, 372
Eco47I GGWCC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 499
EcoT22I ATGCAT 3 cut(s) 115, 127, 174
FaeI CATG 4 cut(s) 155, 176, 425, 458
FatI CATG 4 cut(s) 151, 172, 421, 454
Fnu4HI GCNGC 3 cut(s) 27, 385, 437
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 3 cut(s) 27, 385, 437
FspBI CTAG 2 cut(s) 255, 485
GluI GCNGC 3 cut(s) 27, 385, 437
GsaI CCCAGC 1 cut(s) 391
HaeIII GGCC 3 cut(s) 218, 499, 632
HapII CCGG 1 cut(s) 74
Hin1II CATG 4 cut(s) 155, 176, 425, 458
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 3 cut(s) 509, 556, 573
HpaII CCGG 1 cut(s) 74
HphI GGTGA 3 cut(s) 61, 574, 629
Hpy188I TCNGA 2 cut(s) 109, 508
Hpy188III TCNNGA 8 cut(s) 152, 236, 278, 304, 374, 518, 553, 570
Hpy99I CGWCG 1 cut(s) 471
HpyAV CCTTC 3 cut(s) 16, 524, 622
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 86, 113, 125, 172, 425, 439
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 4 cut(s) 155, 176, 425, 458
Kzo9I GATC 2 cut(s) 100, 503
Lsp1109I GCAGC 2 cut(s) 371, 423
LweI GCATC 2 cut(s) 100, 134
MaeI CTAG 2 cut(s) 255, 485
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 209, 562
MalI GATC 2 cut(s) 102, 505
MboI GATC 2 cut(s) 100, 503
MboII GAAGA 4 cut(s) 110, 199, 307, 389
MflI RGATCY 1 cut(s) 503
MluCI AATT 5 cut(s) 161, 426, 533, 547, 578
MnlI CCTC 4 cut(s) 183, 277, 373, 607
Mph1103I ATGCAT 3 cut(s) 115, 127, 174
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
NdeII GATC 2 cut(s) 100, 503
NlaIII CATG 4 cut(s) 155, 176, 425, 458
NlaIV GGNNCC 1 cut(s) 595
NmuCI GTSAC 2 cut(s) 209, 562
NsiI ATGCAT 3 cut(s) 115, 127, 174
NspI RCATGY 2 cut(s) 176, 458
NspV TTCGAA 1 cut(s) 576
PagI TCATGA 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 3 cut(s) 509, 556, 573
PflFI GACNNNGTC 1 cut(s) 465
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 3 cut(s) 28, 386, 438
PpuMI RGGWCCY 1 cut(s) 233
PshBI ATTAAT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 1 cut(s) 595
PspPI GGNCC 2 cut(s) 217, 233
PspPPI RGGWCCY 1 cut(s) 233
PstNI CAGNNNCTG 2 cut(s) 236, 436
PsuI RGATCY 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 465
RsaI GTAC 3 cut(s) 141, 324, 483
RsaNI GTAC 3 cut(s) 140, 323, 482
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 27, 385, 437
Sau3AI GATC 2 cut(s) 100, 503
Sau96I GGNCC 2 cut(s) 217, 233
ScrFI CCNGG 1 cut(s) 501
SetI ASST 9 cut(s) 44, 97, 160, 198, 235, 328, 354, 545, 619
SfaNI GCATC 2 cut(s) 100, 134
SfuI TTCGAA 1 cut(s) 576
SinI GGWCC 1 cut(s) 233
Sse9I AATT 5 cut(s) 161, 426, 533, 547, 578
SsiI CCGC 1 cut(s) 26
SspMI CTAG 2 cut(s) 255, 485
StyD4I CCNGG 1 cut(s) 499
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 576
TasI AATT 5 cut(s) 161, 426, 533, 547, 578
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 3 cut(s) 509, 556, 573
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 93, 437
TseFI GTSAC 2 cut(s) 209, 562
TseI GCWGC 2 cut(s) 384, 436
Tsp45I GTSAC 2 cut(s) 209, 562
TspDTI ATGAA 4 cut(s) 71, 168, 410, 546
TspRI CASTG 2 cut(s) 93, 437
Tth111I GACNNNGTC 1 cut(s) 465
Van91I CCANNNNNTGG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 233
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 3 cut(s) 533, 547, 578
XceI RCATGY 2 cut(s) 176, 458
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 255, 485
Zsp2I ATGCAT 3 cut(s) 115, 127, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.