Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Reverse (-)

61182117 .. 61187004

Gene Structure 4888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2895 bp

ATGACGTCTCTGGCTCTAACCTTTCTGGGAGGAGCCCCTTTTCAACTGCTGTATGAAGGCGTTAAGACAGCTATTCGCAAAAGTAACAAGTTTAGAACTCACCTCGAAAATCTGGAAATGACGCTAGGCTGTTTGCAACCATGGATCATTCAACAGATAAGAGCAAATAATGTGCAACTGAATCTCCCAAACAATTTGATACAAGATCTTGAAATAAAAATGGAGAAGGGCAAAGAGCTGGTTTACAAGTTATCAAGGCTTGGCGTTTGGAACATCCGTGTCTGGGGAAATTGCTACAATTGTATAAAGCCTAATTACGCAGACCAACTTGCCGAATTGGACAGATCCCTTAGATTACTATTAGAAATACTAAAGCTGGAGGAAATGAGGAATGTTCAGGAGAACTTACTATTGGCGAGGAACCACAGTGACAAACAAGATGATTTGGACAAAAAAATGTCTGAGTTATTGAAAGTGCATCAGGAAGTTCTGAATGCGCAGAAAGAAATGTTTGATATGATGAGAGTGCAGCATGAGGCTGTACATGAGGCAATGCAGAGAATTAGAGCTGATGCTGTGCAAAATGTGCAAGGAGAAACTGCCCCTGCTCCAGCTCCAGCTCTAAGAATAGTATTTTGGGTGCTGTATGATGTTGTTATACAAGTGAAGGTCAAGAATACAATGTGTAAACGCCTCCTTCAAGAATTCAAATCCACGCTCGACTTCTTAAAACCACTGATAGAAGAAATGGCAGAAAGTAACAAACTATTGCATCTTCCAGAGCAGGAACAAGAGAAGTTTATTATTCAAATGAGGGAGGGTGTAGAGCTCATTGACAAGTGCTCCAAAGTTAGCAAGTGGCATAGTTACAAAAAGTATGCATGCACCAACAAACTTCTTAAATTAGATGAATCTCTCCGGGGGCTATTCCATAAAATGAGTATGCAGATTGCAATCCATGTGAAGGAAGGTTTGATTTCAATAAGTAGTATGGAGGCAATGATCAAGAAAATTGAAGAGAGTGGTGTGATACAAAATCAAATTCAAGTTGTACTCACTAAACCACAACCTCCACTGCATGAAGCTGGATTGGATGTTCTGGATACGCATGGAAGTAAGGATGTGGAGGGAACAAGAGACGATTTAAATGAGAAAGAGGTTGGCGTGAAGCAAATTGGAAGAGATGGTACGAGACAGAATGAAAAAGAGATTGAAGGTTTGAGTGAAGTACCTGAAACTTCATCGCCTAAAACTACATTGGATGTGCAAGGAACAAAGGATATAAATGAGTCACTAGATTCAGAAAGTGTACATATAGCGCAGACCAAGCAAAGTCAAGGGACAAGGATGGTTGAAGCTCCAGTTGCTGAGTTATATAAATTTCCATTCCTTATGGTTGAATCGGATGTGTATTTGAGGGAATTAAAGAAGAAGATTTTTGAGGATCAGGTGGCGATGCTTGTGATTACAGGTCCAGCAGGATGCGGGAAAACCACACTGGCAAGAATGTTTTGTGAAGATCAGGAGGTCGTGGCGGCCGTGAGAGCTACAGGGGACTACCCAGAAAGAGTGGGCGAACCTGTATGTCAGGGTGAGAATGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGTTTTACCCTGTAAATTCCACCACCCGCAACCTGCTGGAACAACAATACCAGCCTCTGCACCTCAATTTTATCCATCGGTGGAGTCTCCTTCTGTTCCCATGCCAGAACAATTTGGGGGGCAAGTGCAAGGGACATATGGTCCTGTCTCGATTCCTCCAGGAGTTGTTCCTATTTCGAGCTGGAATCCTTATTCGGCACCTTTAAGTCCTGTACTATCTCCTGGAGCTCAACCCACAGTTGGAGCAACCTCTTTGTATGGACTGACGCAGCTATCTTCTCCCACCCATGCCCTTGAAAGACCTCATACCTCTGTCGTACCATCATCTGTTGGCCCTTCTAGCAGCAGCCCGAATGAACAAGCCTTCCCAGAGAGGCCTGGACAACCTGAATGCCAGTATTACCTGAGAACTGGAGACTGTAAATTTGGACCCTCATGTCGGTACCATCATCCTCGAGATCGGATTGCACCAAGGACAAATTGTCTCCTCAGTCCAGTTGGTCTTCTTGGCAATTCAGGCTCTAATGCTTGGCCTTCATTCAGTCACATGTCATTGTCAATGGAAGATTTTCAGACGTCTTTGGATTTGAAATTGAATGCTCAGCATTGCCTTCCCCAGACACCAATGTCACCTTGTCTATCCATAAGTCGAAGAATAAGCAGCAACGACAAGTCCAGTCAGTCAGATGTAGAGGATAAGAGTGAGCTTGATGAGATTCAAAGCCAAATTTCAGGTGTCACTGTTCCGGAGTCGCTACATGATCCACTTGAAAGTAAAGATCAGTGTCCAATGAATGTGAACAACACATTGGAATATGCAGCTTCAGGGACAACTCCGAATTCAGTTAACGTTGATGGTCAGTCTGTTGCTTGTAACAGCAGTGAGATTGGAAGCATATCACAGAAGCAGGGAGTCAAAGAAAGAGTTGCATTTGGAACAAAATCAGAGATCGAGATATTTGATGATGGATTCAAATGGAGGAAGAATTACTATAAGTGTGCATATGAAGGCTGCCCGGTGAAAAAGAGAGTTGAAAGAGATGGACAAGATCCTAGTTATGTAATTACATGTTATGATGGGGTCCATGACCATACAAGCCTTGGCAAAAGAACCCAGCGAGTACTCGCCAGCCACCCTCAACCTCTCCCTTTTCCCCTCCCTATAGCGAAGGAAGAGAGCTTTCTGTTCGATCATCTTGCAGTCGATAATCAGGAAGAGAGCGTTCTGTTCGATCATCTTGCAGACCATATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

964

Amino Acids

107.74

Weight (kDa)

5.77

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	11 - 137	7.5e-13	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	206 - 336	3.8e-20	Arabidopsis broad-spectrum mildew resistance protein RPW8
zf-CCCH	PF00642	531 - 556	2e-06	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	672 - 698	6.7e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
WRKY	PF03106	871 - 910	3.2e-09	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2073, 2263
AatII	GACGTC	2 cut(s)	8, 2216
Acc16I	TGCGCA	1 cut(s)	498
Acc36I	ACCTGC	1 cut(s)	1678
Acc65I	GGTACC	1 cut(s)	2079
AccB1I	GGYRCC	2 cut(s)	1834, 2079
AccIII	TCCGGA	1 cut(s)	2383
AciI	CCGC	3 cut(s)	1485, 1535, 1664
AclI	AACGTT	1 cut(s)	2487
AclWI	GGATC	5 cut(s)	152, 339, 1452, 2393, 2681
AcoI	YGGCCR	1 cut(s)	1536
AcsI	RAATTY	8 cut(s)	704, 1041, 1379, 1634, 1652, 2060, 2364, 2476
AcuI	CTGAAG	1 cut(s)	2445
AcyI	GRCGYC	2 cut(s)	5, 2213
AfaI	GTAC	9 cut(s)	543, 1053, 1189, 1230, 1311, 1851, 1956, 2081, 2760
AfiI	CCNNNNNNNGG	4 cut(s)	283, 964, 1877, 2076
AflIII	ACRYGT	2 cut(s)	2184, 2705
AhdI	GACNNNNNGTC	2 cut(s)	1776, 2118
AjnI	CCWGG	3 cut(s)	1795, 1858, 2014
AjuI	GAANNNNNNNTTGG	6 cut(s)	395, 427, 619, 651, 2429, 2461
AloI	GAACNNNNNNTCC	4 cut(s)	1080, 1112, 1986, 2018
Alw21I	GWGCWC	3 cut(s)	831, 845, 1867
Alw26I	GTCTC	7 cut(s)	12, 1131, 1186, 1728, 1789, 2046, 2126
AlwI	GGATC	5 cut(s)	152, 339, 1452, 2393, 2681
AlwNI	CAGNNNCTG	2 cut(s)	1367, 1694
Ama87I	CYCGRG	1 cut(s)	2091
Aor13HI	TCCGGA	1 cut(s)	2383
AoxI	GGCC	4 cut(s)	1536, 1969, 2012, 2168
ApeKI	GCWGC	7 cut(s)	529, 1906, 1980, 1983, 2298, 2456, 2649
ApoI	RAATTY	8 cut(s)	704, 1041, 1379, 1634, 1652, 2060, 2364, 2476
ArsI	GACNNNNNNTTYG	2 cut(s)	2045, 2077
Asp700I	GAANNNNTTC	1 cut(s)	2205
Asp718I	GGTACC	1 cut(s)	2079
AspLEI	GCGC	2 cut(s)	499, 1321
AspS9I	GGNCC	5 cut(s)	1472, 1778, 1970, 2066, 2719
AsuC2I	CCSGG	2 cut(s)	920, 2654
AsuHPI	GGTGA	4 cut(s)	92, 1604, 2259, 2668
AvaI	CYCGRG	1 cut(s)	2091
AvaII	GGWCC	4 cut(s)	1472, 1778, 2066, 2719
BanI	GGYRCC	2 cut(s)	1834, 2079
BanII	GRGCYC	3 cut(s)	37, 831, 1867
BarI	GAAGNNNNNNTAC	2 cut(s)	1171, 1203
BbsI	GAAGAC	1 cut(s)	2132
Bbv12I	GWGCWC	3 cut(s)	831, 845, 1867
BbvI	GCAGC	7 cut(s)	541, 1918, 1992, 1995, 2310, 2468, 2636
BccI	CCATC	9 cut(s)	1178, 1342, 1720, 1966, 2091, 2486, 2597, 2672, 2708
BceAI	ACGGC	1 cut(s)	1523
BcgI	CGANNNNNNTGC	4 cut(s)	2816, 2850, 2858, 2892
BciT130I	CCWGG	3 cut(s)	1797, 1860, 2016
BciVI	GTATCC	1 cut(s)	1096
BclI	TGATCA	1 cut(s)	1002
BcnI	CCSGG	2 cut(s)	920, 2654
BcoDI	GTCTC	7 cut(s)	12, 1131, 1186, 1728, 1789, 2046, 2126
BfaI	CTAG	4 cut(s)	125, 1295, 1977, 2691
BfmI	CTRYAG	2 cut(s)	1548, 2799
BfuAI	ACCTGC	1 cut(s)	1678
BfuI	GTATCC	1 cut(s)	1096
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	8 cut(s)	530, 1536, 1907, 1981, 1984, 2299, 2457, 2650
BlpI	GCTNAGC	1 cut(s)	2238
BlsI	GCNGC	8 cut(s)	531, 1537, 1908, 1982, 1985, 2300, 2458, 2651
BmcAI	AGTACT	1 cut(s)	2760
Bme1390I	CCNGG	5 cut(s)	920, 1797, 1860, 2016, 2654
Bme18I	GGWCC	4 cut(s)	1472, 1778, 2066, 2719
BmeRI	GACNNNNNGTC	2 cut(s)	1776, 2118
BmeT110I	CYCGRG	1 cut(s)	2091
BmgT120I	GGNCC	5 cut(s)	1472, 1778, 1970, 2066, 2719
BmiI	GGNNCC	6 cut(s)	34, 422, 1836, 2068, 2081, 2720
BmrFI	CCNGG	5 cut(s)	920, 1797, 1860, 2016, 2654
BmsI	GCATC	5 cut(s)	487, 562, 781, 1446, 1472
BpiI	GAAGAC	1 cut(s)	2132
BpmI	CTGGAG	7 cut(s)	398, 594, 600, 1344, 1779, 1881, 2070
Bpu1102I	GCTNAGC	1 cut(s)	2238
BpuMI	CCSGG	2 cut(s)	920, 2654
BsaBI	GATNNNNATC	1 cut(s)	953
BsaHI	GRCGYC	2 cut(s)	5, 2213
BsaJI	CCNNGG	4 cut(s)	140, 919, 2108, 2737
BsaWI	WCCGGW	1 cut(s)	2383
BsaXI	ACNNNNNCTCC	4 cut(s)	168, 198, 827, 857
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 964, 1877, 2076
Bse1I	ACTGG	6 cut(s)	1361, 1503, 2032, 2053, 2132, 2313
Bse3DI	GCAATG	4 cut(s)	558, 1005, 1634, 2242
Bse8I	GATNNNNATC	1 cut(s)	953
BseAI	TCCGGA	1 cut(s)	2383
BseBI	CCWGG	3 cut(s)	1797, 1860, 2016
BseDI	CCNNGG	4 cut(s)	140, 919, 2108, 2737
BseGI	GGATG	8 cut(s)	273, 1099, 1126, 1267, 1353, 1411, 1487, 2086
BseJI	GATNNNNATC	1 cut(s)	953
BseLI	CCNNNNNNNGG	4 cut(s)	283, 964, 1877, 2076
BseMI	GCAATG	4 cut(s)	558, 1005, 1634, 2242
BseMII	CTCAG	5 cut(s)	453, 1359, 2033, 2140, 2252
BseNI	ACTGG	6 cut(s)	1361, 1503, 2032, 2053, 2132, 2313
BseRI	GAGGAG	2 cut(s)	45, 2114
BseX3I	CGGCCG	1 cut(s)	1536
BseXI	GCAGC	7 cut(s)	541, 1918, 1992, 1995, 2310, 2468, 2636
BseYI	CCCAGC	1 cut(s)	2751
BsgI	GTGCAG	2 cut(s)	548, 1680
Bsh1285I	CGRYCG	1 cut(s)	1539
BshFI	GGCC	4 cut(s)	1538, 1971, 2014, 2170
BshNI	GGYRCC	2 cut(s)	1834, 2079
BsiEI	CGRYCG	1 cut(s)	1539
BsiHKAI	GWGCWC	3 cut(s)	831, 845, 1867
BsiHKCI	CYCGRG	1 cut(s)	2091
BsiSI	CCGG	3 cut(s)	919, 2384, 2654
BslFI	GGGAC	4 cut(s)	1354, 1568, 1783, 2479
BslI	CCNNNNNNNGG	4 cut(s)	283, 964, 1877, 2076
BsmAI	GTCTC	7 cut(s)	12, 1131, 1186, 1728, 1789, 2046, 2126
BsmBI	CGTCTC	2 cut(s)	12, 1131
BsmFI	GGGAC	4 cut(s)	1354, 1568, 1783, 2479
BsmI	GAATGC	4 cut(s)	499, 1607, 2033, 2239
BsnI	GGCC	4 cut(s)	1538, 1971, 2014, 2170
BsoBI	CYCGRG	1 cut(s)	2091
Bsp1286I	GDGCHC	4 cut(s)	37, 831, 845, 1867
Bsp13I	TCCGGA	1 cut(s)	2383
Bsp1407I	TGTACA	2 cut(s)	541, 1309
Bsp1720I	GCTNAGC	1 cut(s)	2238
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	3 cut(s)	1485, 1535, 1664
BspANI	GGCC	4 cut(s)	1538, 1971, 2014, 2170
BspCNI	CTCAG	5 cut(s)	454, 1360, 2034, 2139, 2251
BspEI	TCCGGA	1 cut(s)	2383
BspLI	GGNNCC	6 cut(s)	34, 422, 1836, 2068, 2081, 2720
BspMI	ACCTGC	1 cut(s)	1678
BspPI	GGATC	5 cut(s)	152, 339, 1452, 2393, 2681
BspT107I	GGYRCC	2 cut(s)	1834, 2079
BsrDI	GCAATG	4 cut(s)	558, 1005, 1634, 2242
BsrGI	TGTACA	2 cut(s)	541, 1309
BsrI	ACTGG	6 cut(s)	1361, 1503, 2032, 2053, 2132, 2313
BssECI	CCNNGG	4 cut(s)	140, 919, 2108, 2737
BssNI	GRCGYC	2 cut(s)	5, 2213
BssT1I	CCWWGG	3 cut(s)	140, 2108, 2737
Bst2UI	CCWGG	3 cut(s)	1797, 1860, 2016
Bst4CI	ACNGT	4 cut(s)	428, 1876, 2057, 2380
Bst6I	CTCTTC	4 cut(s)	1011, 1174, 2805, 2847
BstACI	GRCGYC	2 cut(s)	5, 2213
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstAUI	TGTACA	2 cut(s)	541, 1309
BstC8I	GCNNGC	2 cut(s)	883, 2767
BstDEI	CTNAG	7 cut(s)	350, 462, 623, 1368, 2042, 2126, 2238
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	8 cut(s)	273, 1099, 1126, 1267, 1353, 1411, 1487, 2086
BstHHI	GCGC	2 cut(s)	499, 1321
BstMAI	GTCTC	7 cut(s)	12, 1131, 1186, 1728, 1789, 2046, 2126
BstMCI	CGRYCG	1 cut(s)	1539
BstMWI	GCNNNNNNNGC	6 cut(s)	586, 1327, 1364, 1544, 1977, 2154
BstNI	CCWGG	3 cut(s)	1797, 1860, 2016
BstNSI	RCATGY	3 cut(s)	885, 2188, 2709
BstSCI	CCNGG	5 cut(s)	918, 1795, 1858, 2014, 2652
BstSFI	CTRYAG	2 cut(s)	1548, 2799
BstV1I	GCAGC	7 cut(s)	541, 1918, 1992, 1995, 2310, 2468, 2636
BstV2I	GAAGAC	1 cut(s)	2132
BstX2I	RGATCY	3 cut(s)	205, 344, 2686
BstYI	RGATCY	3 cut(s)	205, 344, 2686
BstZI	CGGCCG	1 cut(s)	1536
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	4 cut(s)	1538, 1971, 2014, 2170
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	2 cut(s)	1227, 1469
BtsCI	GGATG	8 cut(s)	273, 1099, 1126, 1267, 1353, 1411, 1487, 2086
BtsI	GCAGTG	2 cut(s)	1073, 2524
BtsIMutI	CAGTG	7 cut(s)	433, 734, 1073, 1496, 2376, 2426, 2524
BveI	ACCTGC	1 cut(s)	1678
Cac8I	GCNNGC	2 cut(s)	883, 2767
CaiI	CAGNNNCTG	2 cut(s)	1367, 1694
CfoI	GCGC	2 cut(s)	499, 1321
Cfr13I	GGNCC	5 cut(s)	1472, 1778, 1970, 2066, 2719
CseI	GACGC	2 cut(s)	130, 1912
Csp6I	GTAC	9 cut(s)	542, 1052, 1188, 1229, 1310, 1850, 1955, 2080, 2759
CviQI	GTAC	9 cut(s)	542, 1052, 1188, 1229, 1310, 1850, 1955, 2080, 2759
DdeI	CTNAG	7 cut(s)	350, 462, 623, 1368, 2042, 2126, 2238
DraI	TTTAAA	1 cut(s)	1146
DrdI	GACNNNNNNGTC	2 cut(s)	2073, 2263
DriI	GACNNNNNGTC	2 cut(s)	1776, 2118
DseDI	GACNNNNNNGTC	2 cut(s)	2073, 2263
EaeI	YGGCCR	1 cut(s)	1536
EagI	CGGCCG	1 cut(s)	1536
Eam1104I	CTCTTC	4 cut(s)	1011, 1174, 2805, 2847
Eam1105I	GACNNNNNGTC	2 cut(s)	1776, 2118
EarI	CTCTTC	4 cut(s)	1011, 1174, 2805, 2847
Ecl136II	GAGCTC	2 cut(s)	829, 1865
EclXI	CGGCCG	1 cut(s)	1536
Eco130I	CCWWGG	3 cut(s)	140, 2108, 2737
Eco147I	AGGCCT	1 cut(s)	2014
Eco24I	GRGCYC	3 cut(s)	37, 831, 1867
Eco47I	GGWCC	4 cut(s)	1472, 1778, 2066, 2719
Eco52I	CGGCCG	1 cut(s)	1536
Eco53kI	GAGCTC	2 cut(s)	829, 1865
Eco57I	CTGAAG	1 cut(s)	2445
Eco88I	CYCGRG	1 cut(s)	2091
EcoICRI	GAGCTC	2 cut(s)	829, 1865
EcoRI	GAATTC	2 cut(s)	704, 2476
EcoRII	CCWGG	3 cut(s)	1795, 1858, 2014
EcoT14I	CCWWGG	3 cut(s)	140, 2108, 2737
EcoT22I	ATGCAT	1 cut(s)	883
EcoT38I	GRGCYC	3 cut(s)	37, 831, 1867
ErhI	CCWWGG	3 cut(s)	140, 2108, 2737
Esp3I	CGTCTC	2 cut(s)	12, 1131
FaqI	GGGAC	4 cut(s)	1354, 1568, 1783, 2479
FauI	CCCGC	2 cut(s)	1478, 1671
FauNDI	CATATG	2 cut(s)	1774, 2641
FbaI	TGATCA	1 cut(s)	1002
Fnu4HI	GCNGC	8 cut(s)	530, 1536, 1907, 1981, 1984, 2299, 2457, 2650
FokI	GGATG	8 cut(s)	260, 1106, 1133, 1274, 1360, 1418, 1494, 2073
FriOI	GRGCYC	3 cut(s)	37, 831, 1867
Fsp4HI	GCNGC	8 cut(s)	530, 1536, 1907, 1981, 1984, 2299, 2457, 2650
FspBI	CTAG	4 cut(s)	125, 1295, 1977, 2691
FspI	TGCGCA	1 cut(s)	498
GlaI	GCGC	2 cut(s)	498, 1320
GluI	GCNGC	8 cut(s)	530, 1536, 1907, 1981, 1984, 2299, 2457, 2650
GsaI	CCCAGC	1 cut(s)	2755
GsuI	CTGGAG	7 cut(s)	398, 594, 600, 1344, 1779, 1881, 2070
HaeIII	GGCC	4 cut(s)	1538, 1971, 2014, 2170
HapII	CCGG	3 cut(s)	919, 2384, 2654
HgaI	GACGC	2 cut(s)	130, 1912
HhaI	GCGC	2 cut(s)	499, 1321
Hin1I	GRCGYC	2 cut(s)	5, 2213
Hin6I	GCGC	2 cut(s)	497, 1319
HinP1I	GCGC	2 cut(s)	497, 1319
HincII	GTYRAC	1 cut(s)	2485
HindII	GTYRAC	1 cut(s)	2485
HpaI	GTTAAC	1 cut(s)	2485
HpaII	CCGG	3 cut(s)	919, 2384, 2654
HphI	GGTGA	4 cut(s)	92, 1604, 2259, 2668
Hpy166II	GTNNAC	5 cut(s)	244, 689, 1310, 2437, 2485
Hpy188I	TCNGA	9 cut(s)	463, 492, 1303, 1405, 2100, 2211, 2323, 2475, 2584
Hpy8I	GTNNAC	5 cut(s)	244, 689, 1310, 2437, 2485
HpyCH4III	ACNGT	4 cut(s)	428, 1876, 2057, 2380
HpyCH4IV	ACGT	3 cut(s)	5, 2213, 2487
HpyF10VI	GCNNNNNNNGC	6 cut(s)	586, 1327, 1364, 1544, 1977, 2154
HpyF3I	CTNAG	7 cut(s)	350, 462, 623, 1368, 2042, 2126, 2238
HpySE526I	ACGT	3 cut(s)	5, 2213, 2487
Hsp92I	GRCGYC	2 cut(s)	5, 2213
HspAI	GCGC	2 cut(s)	497, 1319
Kpn2I	TCCGGA	1 cut(s)	2383
KpnI	GGTACC	1 cut(s)	2083
Ksp22I	TGATCA	1 cut(s)	1002
KspAI	GTTAAC	1 cut(s)	2485
LmnI	GCTCC	8 cut(s)	32, 613, 619, 848, 1363, 1610, 1862, 1880
Lsp1109I	GCAGC	7 cut(s)	541, 1918, 1992, 1995, 2310, 2468, 2636
LweI	GCATC	5 cut(s)	487, 562, 781, 1446, 1472
MaeI	CTAG	4 cut(s)	125, 1295, 1977, 2691
MaeII	ACGT	3 cut(s)	5, 2213, 2487
MaeIII	GTNAC	9 cut(s)	83, 428, 758, 866, 1290, 2180, 2265, 2374, 2510
MfeI	CAATTG	1 cut(s)	298
MflI	RGATCY	3 cut(s)	205, 344, 2686
MhlI	GDGCHC	4 cut(s)	37, 831, 845, 1867
MlyI	GAGTC	4 cut(s)	1298, 1730, 2396, 2559
MmeI	TCCRAC	1 cut(s)	1858
Mph1103I	ATGCAT	1 cut(s)	883
MroI	TCCGGA	1 cut(s)	2383
MroXI	GAANNNNTTC	1 cut(s)	2205
MseI	TTAA	7 cut(s)	63, 728, 900, 1145, 1424, 1841, 2484
MspI	CCGG	3 cut(s)	919, 2384, 2654
MspR9I	CCNGG	5 cut(s)	920, 1797, 1860, 2016, 2654
MunI	CAATTG	1 cut(s)	298
Mva1269I	GAATGC	4 cut(s)	499, 1607, 2033, 2239
MvaI	CCWGG	3 cut(s)	1797, 1860, 2016
MwoI	GCNNNNNNNGC	6 cut(s)	586, 1327, 1364, 1544, 1977, 2154
NciI	CCSGG	2 cut(s)	920, 2654
NcoI	CCATGG	1 cut(s)	140
NdeI	CATATG	2 cut(s)	1774, 2641
NlaIV	GGNNCC	6 cut(s)	34, 422, 1836, 2068, 2081, 2720
NmuCI	GTSAC	5 cut(s)	428, 1290, 2180, 2265, 2374
NsbI	TGCGCA	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	3 cut(s)	885, 2188, 2709
PaeI	GCATGC	1 cut(s)	885
PaeR7I	CTCGAG	1 cut(s)	2091
PceI	AGGCCT	1 cut(s)	2014
PciI	ACATGT	2 cut(s)	2184, 2705
PcsI	WCGNNNNNNNCGW	1 cut(s)	1536
PctI	GAATGC	4 cut(s)	499, 1607, 2033, 2239
PdmI	GAANNNNTTC	1 cut(s)	2205
PfeI	GAWTC	8 cut(s)	181, 911, 1298, 1400, 1789, 1822, 2353, 2607
PfoI	TCCNGGA	2 cut(s)	1795, 1858
PkrI	GCNGC	8 cut(s)	531, 1537, 1908, 1982, 1985, 2300, 2458, 2651
PleI	GAGTC	4 cut(s)	1297, 1729, 2395, 2558
PpsI	GAGTC	4 cut(s)	1297, 1729, 2395, 2558
PscI	ACATGT	2 cut(s)	2184, 2705
Psp124BI	GAGCTC	2 cut(s)	831, 1867
Psp1406I	AACGTT	1 cut(s)	2487
Psp6I	CCWGG	3 cut(s)	1795, 1858, 2014
PspFI	CCCAGC	1 cut(s)	2751
PspGI	CCWGG	3 cut(s)	1795, 1858, 2014
PspN4I	GGNNCC	6 cut(s)	34, 422, 1836, 2068, 2081, 2720
PspPI	GGNCC	5 cut(s)	1472, 1778, 1970, 2066, 2719
PstNI	CAGNNNCTG	2 cut(s)	1367, 1694
PsuI	RGATCY	3 cut(s)	205, 344, 2686
RsaI	GTAC	9 cut(s)	543, 1053, 1189, 1230, 1311, 1851, 1956, 2081, 2760
RsaNI	GTAC	9 cut(s)	542, 1052, 1188, 1229, 1310, 1850, 1955, 2080, 2759
SacI	GAGCTC	2 cut(s)	831, 1867
SaqAI	TTAA	7 cut(s)	63, 728, 900, 1145, 1424, 1841, 2484
SatI	GCNGC	8 cut(s)	530, 1536, 1907, 1981, 1984, 2299, 2457, 2650
Sau96I	GGNCC	5 cut(s)	1472, 1778, 1970, 2066, 2719
ScaI	AGTACT	1 cut(s)	2760
SchI	GAGTC	4 cut(s)	1298, 1730, 2396, 2559
ScrFI	CCNGG	5 cut(s)	920, 1797, 1860, 2016, 2654
SduI	GDGCHC	4 cut(s)	37, 831, 845, 1867
SfaNI	GCATC	5 cut(s)	487, 562, 781, 1446, 1472
SfcI	CTRYAG	2 cut(s)	1548, 2799
Sfr274I	CTCGAG	1 cut(s)	2091
SinI	GGWCC	4 cut(s)	1472, 1778, 2066, 2719
SlaI	CTCGAG	1 cut(s)	2091
SmiI	ATTTAAAT	1 cut(s)	1146
SmlI	CTYRAG	1 cut(s)	2091
SmoI	CTYRAG	1 cut(s)	2091
SphI	GCATGC	1 cut(s)	885
SseBI	AGGCCT	1 cut(s)	2014
SsiI	CCGC	3 cut(s)	1485, 1535, 1664
SspMI	CTAG	4 cut(s)	125, 1295, 1977, 2691
SstI	GAGCTC	2 cut(s)	831, 1867
StuI	AGGCCT	1 cut(s)	2014
StyD4I	CCNGG	5 cut(s)	918, 1795, 1858, 2014, 2652
StyI	CCWWGG	3 cut(s)	140, 2108, 2737
SwaI	ATTTAAAT	1 cut(s)	1146
TaaI	ACNGT	4 cut(s)	428, 1876, 2057, 2380
TaiI	ACGT	3 cut(s)	8, 2216, 2490
TatI	WGTACW	5 cut(s)	541, 1051, 1309, 1849, 2758
TauI	GCSGC	1 cut(s)	1538
TfiI	GAWTC	8 cut(s)	181, 911, 1298, 1400, 1789, 1822, 2353, 2607
Tru1I	TTAA	7 cut(s)	63, 728, 900, 1145, 1424, 1841, 2484
Tru9I	TTAA	7 cut(s)	63, 728, 900, 1145, 1424, 1841, 2484
TscAI	CASTG	7 cut(s)	433, 741, 1080, 1503, 2383, 2426, 2524
TseFI	GTSAC	5 cut(s)	428, 1290, 2180, 2265, 2374
TseI	GCWGC	7 cut(s)	529, 1906, 1980, 1983, 2298, 2456, 2649
Tsp45I	GTSAC	5 cut(s)	428, 1290, 2180, 2265, 2374
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	7 cut(s)	433, 741, 1080, 1503, 2383, 2426, 2524
VpaK11BI	GGWCC	4 cut(s)	1472, 1778, 2066, 2719
XapI	RAATTY	8 cut(s)	704, 1041, 1379, 1634, 1652, 2060, 2364, 2476
XceI	RCATGY	3 cut(s)	885, 2188, 2709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2735
XhoI	CTCGAG	1 cut(s)	2091
XmnI	GAANNNNTTC	1 cut(s)	2205
XspI	CTAG	4 cut(s)	125, 1295, 1977, 2691
ZraI	GACGTC	2 cut(s)	6, 2214
ZrmI	AGTACT	1 cut(s)	2760
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.