Prupe.5G127700_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000408
Physical Location & Seq
Forward (+)
12457331 .. 12459277
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G127700.1

Sequence Viewer

Length: 1119 bp
ATGTCCAACCCGAAAACTAAGTCAGTCACGATGCATGAGGATTCTTTTGCCTCAATTAGAGAGGATGATTTTGAGCAAAACTCTCCAATCATAGATTCAGGAGGAGCTGAAGATGAAAGTTATCTTAAGGCAAAAATATGTTTCGCAAGCTTTGCAGATAAGCATCTTATCATGGAAGAGGATGATTCTTCAACCTCAAGTACAGTGGATGATTTGGAACAAAATTCACTACCTAGTGGGAATGGTGTGCAAAGAACTGTTCTAGGAGCAGTGTTTGGGATGCTTTTTGGTGCTATTATACAAGTGAAGGACAAGACTAAGATGTTTAAGCACATCATTGGATATCTCAACTCCACGTTAGACTCCTTAAAACCACTAATAGAAGAGATAACAGAATATAACAAGGTACTGCATCTCCCCAAGGAAGAACTAGAGAATTTCACCATACAAATGGAGATGGAGGTAGAGCTCATTCACAAGTGCTCTAAGGTTCATAAGTGGGCTAACTACAAAAAATATGAATATATCAACAAACTTCTTAGATTGGATGTATCTCTTCAAGGATTATTAAGTATACTGAGAGTGCAGTTAGCAAGAGATGTGAGAGAGAGCTTAGTTTTCGTAAGTAATACAGAGGCTGTGATCAAGCAAATTGAAGAGAGTGGTACGGTACAATTACAGAATGATCCAACTGAAATTGAAGATTCATGTGATGTACTTGAACCCTCACAGCCTGAAGTTGGATTGAGTGTGCAGGGAACAAAGAATGTGAAGGAGACATTGGATTCGGCAGCAAAAATAGAGGTCGGGGTGAAGCAAATCGAAGGTAGTGGAGATGTACAAGGTCAAACTGACATGGGAATAGGTGAACCTACATTGCTTACACTTGAAGCTCCGGATGCTGAAAATGAGATGACTGAATATGTACCTTCAACAGTTACAGTTAGCTTGGATGTGCTATTGAATGAGTTGAAGAGGAAGCTTCTTAAGGATGAGGCATTAGCGCTTGTGCTAACGGGGCCTCGGGGATGCTGCAAAACCACATTTGCAAAAATAAATTGTCAAGATAAGGAAGTTAAAGATATATTCAAGAAGAGTATCTTCTTTATTCGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

373

Amino Acids

41.47

Weight (kDa)

4.8

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 574
AccIII TCCGGA 1 cut(s) 895
AclWI GGATC 1 cut(s) 680
AcsI RAATTY 2 cut(s) 223, 436
AcuI CTGAAG 2 cut(s) 129, 756
AfaI GTAC 7 cut(s) 202, 408, 667, 672, 717, 840, 927
AfeI AGCGCT 1 cut(s) 1005
AfiI CCNNNNNNNGG 1 cut(s) 740
AflII CTTAAG 2 cut(s) 125, 986
AjuI GAANNNNNNNTTGG 4 cut(s) 79, 111, 764, 796
AluBI AGCT 7 cut(s) 107, 150, 469, 612, 893, 948, 982
AluI AGCT 7 cut(s) 107, 150, 469, 612, 893, 948, 982
Alw21I GWGCWC 2 cut(s) 471, 485
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 1 cut(s) 680
AlwNI CAGNNNCTG 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 1023
Aor13HI TCCGGA 1 cut(s) 895
Aor51HI AGCGCT 1 cut(s) 1005
AoxI GGCC 1 cut(s) 1019
ApeKI GCWGC 2 cut(s) 791, 1032
ApoI RAATTY 2 cut(s) 223, 436
ArsI GACNNNNNNTTYG 3 cut(s) 37, 769, 801
AspLEI GCGC 1 cut(s) 1006
AspS9I GGNCC 1 cut(s) 1019
AsuHPI GGTGA 3 cut(s) 433, 823, 878
AvaI CYCGRG 1 cut(s) 1023
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 2 cut(s) 471, 485
BbvI GCAGC 2 cut(s) 803, 1019
BccI CCATC 1 cut(s) 451
BclI TGATCA 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 3 cut(s) 234, 263, 431
BfoI RGCGCY 1 cut(s) 1007
BfrI CTTAAG 2 cut(s) 125, 986
BisI GCNGC 2 cut(s) 792, 1033
BlsI GCNGC 2 cut(s) 793, 1034
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 1 cut(s) 1019
BmiI GGNNCC 1 cut(s) 1020
BmsI GCATC 6 cut(s) 21, 172, 270, 421, 889, 1019
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpuEI CTTGAG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 420, 1022
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 875
Bse8I GATNNNNATC 1 cut(s) 162
BseAI TCCGGA 1 cut(s) 895
BseDI CCNNGG 2 cut(s) 420, 1022
BseGI GGATG 9 cut(s) 70, 187, 214, 285, 553, 904, 958, 997, 1034
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 1 cut(s) 569
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 803, 1019
BsgI GTGCAG 2 cut(s) 605, 773
BshFI GGCC 1 cut(s) 1021
BsiHKAI GWGCWC 2 cut(s) 471, 485
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 1 cut(s) 896
BslI CCNNNNNNNGG 1 cut(s) 740
BsmAI GTCTC 1 cut(s) 770
BsnI GGCC 1 cut(s) 1021
BsoBI CYCGRG 1 cut(s) 1023
Bsp1286I GDGCHC 2 cut(s) 471, 485
Bsp13I TCCGGA 1 cut(s) 895
Bsp1407I TGTACA 1 cut(s) 838
Bsp143I GATC 2 cut(s) 642, 685
BspANI GGCC 1 cut(s) 1021
BspCNI CTCAG 1 cut(s) 570
BspEI TCCGGA 1 cut(s) 895
BspLI GGNNCC 1 cut(s) 1020
BspPI GGATC 1 cut(s) 680
BspTI CTTAAG 2 cut(s) 125, 986
BsrDI GCAATG 1 cut(s) 875
BsrGI TGTACA 1 cut(s) 838
BssECI CCNNGG 2 cut(s) 420, 1022
BssMI GATC 2 cut(s) 642, 685
BssNAI GTATAC 1 cut(s) 575
BssT1I CCWWGG 1 cut(s) 420
Bst1107I GTATAC 1 cut(s) 575
Bst4CI ACNGT 5 cut(s) 205, 259, 670, 937, 943
Bst6I CTCTTC 6 cut(s) 171, 378, 561, 651, 968, 1088
BstAFI CTTAAG 2 cut(s) 125, 986
BstAPI GCANNNNNTGC 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 838
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 6 cut(s) 18, 318, 486, 539, 578, 613
BstF5I GGATG 9 cut(s) 70, 187, 214, 285, 553, 904, 958, 997, 1034
BstH2I RGCGCY 1 cut(s) 1007
BstHHI GCGC 1 cut(s) 1006
BstKTI GATC 2 cut(s) 645, 688
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 2 cut(s) 642, 685
BstMWI GCNNNNNNNGC 3 cut(s) 152, 899, 1018
BstV1I GCAGC 2 cut(s) 803, 1019
BstXI CCANNNNNNTGG 1 cut(s) 451
BstZ17I GTATAC 1 cut(s) 575
BsuRI GGCC 1 cut(s) 1021
BtsCI GGATG 9 cut(s) 70, 187, 214, 285, 553, 904, 958, 997, 1034
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 210, 276
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 1 cut(s) 1006
Cfr13I GGNCC 1 cut(s) 1019
Csp6I GTAC 7 cut(s) 201, 407, 666, 671, 716, 839, 926
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 4 cut(s) 35, 172, 708, 856
CviQI GTAC 7 cut(s) 201, 407, 666, 671, 716, 839, 926
DdeI CTNAG 6 cut(s) 18, 318, 486, 539, 578, 613
DpnI GATC 2 cut(s) 644, 687
DpnII GATC 2 cut(s) 642, 685
Eam1104I CTCTTC 6 cut(s) 171, 378, 561, 651, 968, 1088
EarI CTCTTC 6 cut(s) 171, 378, 561, 651, 968, 1088
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 471
Eco32I GATATC 1 cut(s) 344
Eco47III AGCGCT 1 cut(s) 1005
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 2 cut(s) 129, 756
Eco88I CYCGRG 1 cut(s) 1023
EcoICRI GAGCTC 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 1019
EcoRV GATATC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 4 cut(s) 38, 175, 711, 859
FalI AAGNNNNNCTT 2 cut(s) 1085, 1117
FatI CATG 4 cut(s) 34, 171, 707, 855
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 2 cut(s) 792, 1033
FokI GGATG 9 cut(s) 77, 194, 221, 292, 560, 911, 965, 1004, 1041
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 2 cut(s) 792, 1033
FspBI CTAG 3 cut(s) 234, 263, 431
GlaI GCGC 1 cut(s) 1005
GluI GCNGC 2 cut(s) 792, 1033
HaeII RGCGCY 1 cut(s) 1007
HaeIII GGCC 1 cut(s) 1021
HapII CCGG 1 cut(s) 896
HhaI GCGC 1 cut(s) 1006
Hin1II CATG 4 cut(s) 38, 175, 711, 859
Hin6I GCGC 1 cut(s) 1004
HinP1I GCGC 1 cut(s) 1004
HindIII AAGCTT 2 cut(s) 148, 980
HinfI GANTC 6 cut(s) 41, 95, 185, 362, 704, 785
HpaII CCGG 1 cut(s) 896
HphI GGTGA 3 cut(s) 433, 823, 878
Hpy166II GTNNAC 2 cut(s) 575, 869
Hpy188III TCNNGA 5 cut(s) 28, 99, 896, 1064, 1090
Hpy8I GTNNAC 2 cut(s) 575, 869
HpyAV CCTTC 4 cut(s) 301, 766, 818, 939
HpyCH4III ACNGT 5 cut(s) 205, 259, 670, 937, 943
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 8 cut(s) 34, 155, 250, 412, 586, 754, 1035, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 899, 1018
HpyF3I CTNAG 6 cut(s) 18, 318, 486, 539, 578, 613
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 4 cut(s) 38, 175, 711, 859
HspAI GCGC 1 cut(s) 1004
Kpn2I TCCGGA 1 cut(s) 895
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 2 cut(s) 642, 685
LmnI GCTCC 3 cut(s) 104, 266, 898
LpnPI CCDG 4 cut(s) 84, 740, 747, 909
Lsp1109I GCAGC 2 cut(s) 803, 1019
LweI GCATC 6 cut(s) 21, 172, 270, 421, 889, 1019
MaeI CTAG 3 cut(s) 234, 263, 431
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 25, 937
MalI GATC 2 cut(s) 644, 687
MboI GATC 2 cut(s) 642, 685
MhlI GDGCHC 2 cut(s) 471, 485
MluCI AATT 7 cut(s) 54, 223, 436, 651, 674, 696, 1057
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 3 cut(s) 30, 713, 721
Mph1103I ATGCAT 1 cut(s) 36
MroI TCCGGA 1 cut(s) 895
MseI TTAA 6 cut(s) 126, 327, 368, 569, 987, 1077
MslI CAYNNNNRTG 1 cut(s) 449
MspCI CTTAAG 2 cut(s) 125, 986
MspI CCGG 1 cut(s) 896
MwoI GCNNNNNNNGC 3 cut(s) 152, 899, 1018
NdeII GATC 2 cut(s) 642, 685
NlaIII CATG 4 cut(s) 38, 175, 711, 859
NlaIV GGNNCC 1 cut(s) 1020
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 36
PfeI GAWTC 5 cut(s) 41, 95, 185, 704, 785
PkrI GCNGC 2 cut(s) 793, 1034
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 1020
PspPI GGNCC 1 cut(s) 1019
PstNI CAGNNNCTG 1 cut(s) 638
RsaI GTAC 7 cut(s) 202, 408, 667, 672, 717, 840, 927
RsaNI GTAC 7 cut(s) 201, 407, 666, 671, 716, 839, 926
RseI CAYNNNNRTG 1 cut(s) 449
SacI GAGCTC 1 cut(s) 471
SaqAI TTAA 6 cut(s) 126, 327, 368, 569, 987, 1077
SatI GCNGC 2 cut(s) 792, 1033
Sau3AI GATC 2 cut(s) 642, 685
Sau96I GGNCC 1 cut(s) 1019
SchI GAGTC 1 cut(s) 356
SduI GDGCHC 2 cut(s) 471, 485
SfaNI GCATC 6 cut(s) 21, 172, 270, 421, 889, 1019
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 3 cut(s) 125, 196, 986
SmoI CTYRAG 3 cut(s) 125, 196, 986
Sse9I AATT 7 cut(s) 54, 223, 436, 651, 674, 696, 1057
SspMI CTAG 3 cut(s) 234, 263, 431
SstI GAGCTC 1 cut(s) 471
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 5 cut(s) 205, 259, 670, 937, 943
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 822
TasI AATT 7 cut(s) 54, 223, 436, 651, 674, 696, 1057
TatI WGTACW 3 cut(s) 200, 715, 838
TfiI GAWTC 5 cut(s) 41, 95, 185, 704, 785
Tru1I TTAA 6 cut(s) 126, 327, 368, 569, 987, 1077
Tru9I TTAA 6 cut(s) 126, 327, 368, 569, 987, 1077
TscAI CASTG 2 cut(s) 210, 276
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 791, 1032
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 4 cut(s) 129, 482, 534, 696
TspRI CASTG 2 cut(s) 210, 276
Vha464I CTTAAG 2 cut(s) 125, 986
XapI RAATTY 2 cut(s) 223, 436
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 3 cut(s) 234, 263, 431
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.