FvH4_5g11201

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000408
Physical Location & Seq
Reverse (-)
6350825 .. 6351679
855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11201.t1

Sequence Viewer

Length: 462 bp
ATGCAGGGAAAAAGGGGTGTGATCAAGGAAAGATGGGACTCGGAAGACGTGCAGGATGTCAAGCAAAGTAAAAGGGAAGGCGTCTTTGAATATCAGGTTGCTGATGGACTTGCACTGGAACTTGAAGATCAGTCTGATGCATACAGCGATGCATCAATGGGGGCAGTACAGATTAATCATGAAGCTGAATTGAATATGCATGTGAACAACTTGAAGAGGAAGCTTTTGTATGATGGTCACTCGGCCCTTGTGCTGACTGTCCTGAACGATGTGGGAAAACTAGACTGGTTTCAAGATGAGGAAGTGAAAGATGAATTTAAGAACAACAACTTCTGCGTCCCTGTTTCACAGAATCCAAGTTTGGACCTTATTGTTCAACAACTATATCCAGAGGGCTGCTGGGAGATTGCAAGCATTTGCGAAGCATGTAGGACATCGTCATTCTCTGTCGGTACTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

4.57

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 168, 454
AgsI TTSAA 6 cut(s) 89, 125, 193, 214, 293, 377
AjiI CACGTC 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 2 cut(s) 185, 223
AluI AGCT 2 cut(s) 185, 223
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 314
AseI ATTAAT 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 244, 364
AvaII GGWCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 383
BccI CCATC 3 cut(s) 27, 98, 227
BclI TGATCA 1 cut(s) 21
BfaI CTAG 2 cut(s) 281, 456
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 244, 364
BmsI GCATC 3 cut(s) 127, 139, 161
BpiI GAAGAC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 81
Bse1I ACTGG 2 cut(s) 120, 290
BseGI GGATG 1 cut(s) 61
BseNI ACTGG 2 cut(s) 120, 290
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 399
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 245
BslFI GGGAC 2 cut(s) 50, 323
BsmFI GGGAC 2 cut(s) 50, 323
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 21, 127
BspANI GGCC 1 cut(s) 245
BspHI TCATGA 1 cut(s) 178
BsrI ACTGG 2 cut(s) 120, 290
BssMI GATC 2 cut(s) 21, 127
BssNI GRCGYC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 412
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 24, 130
BstMBI GATC 2 cut(s) 21, 127
BstNSI RCATGY 2 cut(s) 203, 429
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 412
CciI TCATGA 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 244, 364
CseI GACGC 2 cut(s) 70, 325
Csp6I GTAC 2 cut(s) 167, 453
CviAII CATG 3 cut(s) 179, 200, 426
CviJI RGCY 4 cut(s) 185, 223, 245, 396
CviKI_1 RGCY 4 cut(s) 185, 223, 245, 396
CviQI GTAC 2 cut(s) 167, 453
DpnI GATC 2 cut(s) 23, 129
DpnII GATC 2 cut(s) 21, 127
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 364
EcoT22I ATGCAT 3 cut(s) 142, 154, 201
FaeI CATG 3 cut(s) 182, 203, 429
FaiI YATR 7 cut(s) 142, 180, 197, 201, 231, 385, 427
FaqI GGGAC 2 cut(s) 50, 323
FatI CATG 3 cut(s) 178, 199, 425
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 397
FspBI CTAG 2 cut(s) 281, 456
GluI GCNGC 1 cut(s) 397
GsaI CCCAGC 1 cut(s) 403
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 2 cut(s) 70, 325
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 182, 203, 429
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 38, 352
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 43, 136
Hpy188III TCNNGA 4 cut(s) 179, 262, 293, 389
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 7 cut(s) 4, 52, 113, 140, 152, 199, 410
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 182, 203, 429
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 127
LpnPI CCDG 8 cut(s) 38, 80, 101, 271, 275, 354, 385, 402
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 3 cut(s) 127, 139, 161
MaeI CTAG 2 cut(s) 281, 456
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 23, 129
MboI GATC 2 cut(s) 21, 127
MboII GAAGA 3 cut(s) 56, 137, 226
MluCI AATT 2 cut(s) 188, 314
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 3 cut(s) 210, 292, 385
Mph1103I ATGCAT 3 cut(s) 142, 154, 201
MseI TTAA 2 cut(s) 174, 318
NdeII GATC 2 cut(s) 21, 127
NlaIII CATG 3 cut(s) 182, 203, 429
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 236
NsiI ATGCAT 3 cut(s) 142, 154, 201
NspI RCATGY 2 cut(s) 203, 429
PagI TCATGA 1 cut(s) 178
PfeI GAWTC 1 cut(s) 352
PflFI GACNNNGTC 1 cut(s) 436
PkrI GCNGC 1 cut(s) 398
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 399
PspPI GGNCC 2 cut(s) 244, 364
PsyI GACNNNGTC 1 cut(s) 436
RsaI GTAC 2 cut(s) 168, 454
RsaNI GTAC 2 cut(s) 167, 453
SaqAI TTAA 2 cut(s) 174, 318
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 2 cut(s) 21, 127
Sau96I GGNCC 2 cut(s) 244, 364
SchI GAGTC 1 cut(s) 32
SetI ASST 5 cut(s) 51, 99, 187, 225, 369
SfaNI GCATC 3 cut(s) 127, 139, 161
SinI GGWCC 1 cut(s) 364
Sse9I AATT 2 cut(s) 188, 314
SspMI CTAG 2 cut(s) 281, 456
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 51
TasI AATT 2 cut(s) 188, 314
TatI WGTACW 1 cut(s) 166
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 2 cut(s) 174, 318
Tru9I TTAA 2 cut(s) 174, 318
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 195, 327
TspRI CASTG 1 cut(s) 120
Tth111I GACNNNGTC 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 364
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 314
XceI RCATGY 2 cut(s) 203, 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XspI CTAG 2 cut(s) 281, 456
Zsp2I ATGCAT 3 cut(s) 142, 154, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.