RLG00000014202

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000408
Physical Location & Seq
Forward (+)
49274445 .. 49283702
9258 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014202

Sequence Viewer

Length: 3069 bp
ATGGGGTCTGTGGCTCTAAATTTTGTTGGAGGAATCCCTTTTCAAGGGCTGTATGATGTTGTTAAGGTGGCCGTTCACAAGAGTAGGAAGTTTAAAATCCACCTTTTAAATCTCGAATTCACGCTACGTTGTATACATTCACCGACTCTAGAAGAGATACGAAATAATTACGTTTGTTTAAATCTTCTAACCGATACAGTAGTAGATCTTAAACAAAAAGTGATTGAGGGGAAAAAGCGTGTGGGTGAGTTATCCGAGCTTAGCATTTGGAATATCCGCATTTGGGGCAATTGCTGCAACTGCATAGGGCCTGATTACGCAAAAGAACTTGATGAATTGGATAGGTCTCTTTGGAGCCTGTTAGAATTACTACAGTTGGAGCAAATGAGGAATATGACCGAGCTCTTATGTTTGGCAAGAGAGGCCAAAGACAGACAAGATGGTTTGGAGAAAAAACAAGGTGAAGTGTTGACGGGGGTACAGGAATTGGGGAAAAAAGTAGATGAATTATTGGCTACATTGAAGGAGCAGCAGGATGCGAGACATAGAATTATACCGAATAGCATGCAACAAGCTCCATCATCAAGTGGAGGAGGGGCTACTAATCTTGCTCTAGGAGTAGTATTCCGAGAGTTGATTGATGCTATTGCACAAGTGAAAGTTGAGAACATGATGCTTAAACGCCTCCTCAAAACATTCAAATCCACGCTATATTGCTTACAACCATTGATAGAAGAGATAGCAGAACATGGCAGGGTAGTGCATCTTCCAAAGCAAGAAGTGGAAAAGCTTACTATACAAATAGAGAATGGTGTAGAGTATGTTCTCCAATGGTCCAAGGTTCGTAAGAATGCCAACTACAAAAAGTATAAATACACCAACAAAATCCTCAGTTTGGATGAATCTCTTCAAAGGCTCTTCATTGAACTGAAAGGGCAGGTAGAAAGGAATGTGAAGGAGGCCATGGATTCTGCAAACAAAATAGAGATGGCGATCAAGAAAATTGAAGCTGAAGGTTTATGTGACGTGCAGATGCCTGAACTTCATTCACATGCAGTTGGGTTTGATATACTCAACATGCAAGGATTAAGAGATGTGATTAAGGAGACTTTGTTGGACTCGGCAAGTGTTAGAGAGGAGACTGAAGGTTCATCTAACATGCCGCCTGAACTCCCTTCACCTGAGGATGGAGTAGATGTACTGAATATGCAGGGATCATTGGATCTTAGTACTACAAATATCCAGGTGGTGGTCACAGAAACGGAAGGAATAGGGGTTGTTGATGATTCAACAAGGAATGTACAGGAAACAGCGGATCTACTAGATGAAGAGCGTAGTGAAAGTGAACCTGCACCTCCTACTGTTTGGTTTGATGCACCGGATGTTCACGGAACAAGTGAAGAGGTGGTTACATTGGATAAGCAAAATGAATGTGGAATTGCAACAGCTGAACTTCTATCTTCATCGCCTGCAGTTGGATTAACATCGGCTTCGACAACCAATACAAAGGCGAGGCTCAAACAACATACAGTAGAGGCCAAAGCATCAGAGTTCTTATACAATGAGGAGTTGAGACAAAGAAAAGAAATTGAGCACACAGTAGCAAGAGAAAGAGAAGAACTTGAAAAGATGAAGAAGCAACGAGATGAAATCATGGAAGAATTTAAGGCCGCCTTAGAACAAAGATCACAACTCGCCTTAGAACAAAGATCACGACTCGAGAGCCAAATTGCGGAGTCTGATCAGCTGGTTCAGAGCTTGGAGCAGAAGATCATATTTTCTGTGGATCTCTTACAAAATTACAAAAGAGAACGGGATGAGTTGTATGTAGAACATGACAATGCTCTTAGAGAAGCAGAGGAGCTAAGGAAAAGACAAGGAGAGGCCTCAAGCACACAGATGCCTCAGTTCTTCTCTGAATTTTCATTTCCCGAGATTGAGGAAGCAACTCGACACTTTGACCCATCACTTAAGATTGGAGAAGGTGGATATGGAAGCATTTTCAAAGGTTTCCTATGTCACACTGAGGTGGCTATAAAAATGCTAAATGCTCATAGTTTGCAAGGCCCCTCTGAATTCCAGCAAGAGGTGGATATATTAAGTAAGCTGAGGCATACCAATCTTGTCACCCTCATTGGTGCCTGCCCAGAAGCCTGGACTCTTATCTATGAGTATCTTGCAAATGGAAGCCTTGAAGATCGACTAAGTTGCAAGGACAATACTCCCCCATTATCATGGCAAGCTCGAATACGCATTGCTACTGAGTTGTGTTCTGTCCTAATCTTTCTCCACTCCAGTAAACCACACAGCGTAGTACATGGTGATTTGAAACCCTCCAATATTCTCCTTGATGCTAACTCTGTTTGCAAACTTAGTGACTGTGGCATCAGTCGGCTTTTGTCTCGAGGTCAAGGTTCAAGCAACAACACAACACTCTGTTGCAGGACTGGTCCAAAAGGTACTTTCGCTTACATGGATCCTGAGTTCCTTTCATCGGGAGAGCTTACACCGAAGTCAGATGTGTATTCATTTGGAATTATACTCTTACGATTGTTAACCGGAAAACCAGCTTTGGGAATAACAAAGGAAGTACAGTATGCATTAGATTCTGGAAAGTTGGAAACCCTCTTGGATCCTTTAGCAGGAGACTGGCCATTTGTACAGGCTGAACAGTTGGCTCGCTTAGCATTGAGGTGTTGTGAGATGAGCCGGAAGTGCAGGGCAGACCTTGTGTCAGATGTGTGGAGGGTACTTGAACCAATGAGGGCTTCTTGTGGCTCCTCATCATCATTCCGGCTGGGTACTGAAGAGCACTTCCAACCTCCCTCATACTTCATCTGTCCCATTTTCCAGGAAATCATGCAAGATCCACATGTTGCAGCAGATGGTTTCTCTTATGAAGCAGAGGCTCTGAGGGGATGGCTGGACAGTGGTCATGACACTTCACCTATGACAAATCTTAAGCTCGAACACAAGAATCTCGTCCCCAACCACGCTCTTCGCTCTGCAATTCAGGAGTGGCTGCAACAGCGCGCTTCAGAAAAGAAGGATTTACGTCAATTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr U-box

Protein Analysis

1023

Amino Acids

115.09

Weight (kDa)

5.28

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 11 - 140 4.4e-06 Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8 PF05659 204 - 333 5.4e-20 Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase PF00069 658 - 907 3e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 658 - 860 9.7e-37 Protein tyrosine and serine/threonine kinase
U-box PF04564 942 - 1011 1.5e-18 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 928, 1357
AccB1I GGYRCC 1 cut(s) 2138
AccB7I CCANNNNNTGG 1 cut(s) 1249
AccI GTMKAC 1 cut(s) 133
AccII CGCG 1 cut(s) 3033
AciI CCGC 5 cut(s) 277, 1163, 1313, 1671, 1733
AclWI GGATC 9 cut(s) 1222, 1230, 1323, 1794, 2471, 2484, 2627, 2640, 2861
AcoI YGGCCR 2 cut(s) 69, 2651
AcsI RAATTY 5 cut(s) 19, 116, 1661, 1919, 2075
AcuI CTGAAG 4 cut(s) 1032, 1164, 2826, 3021
AflII CTTAAG 2 cut(s) 1970, 2960
AflIII ACRYGT 1 cut(s) 2872
AhdI GACNNNNNGTC 1 cut(s) 2731
AjiI CACGTC 1 cut(s) 1027
AjnI CCWGG 3 cut(s) 1242, 2153, 2850
AjuI GAANNNNNNNTTGG 2 cut(s) 2752, 2784
AleI CACNNNNGTG 1 cut(s) 2027
AloI GAACNNNNNNTCC 2 cut(s) 2468, 2500
Alw21I GWGCWC 3 cut(s) 405, 1596, 2814
Alw26I GTCTC 7 cut(s) 351, 535, 1100, 1133, 1567, 2406, 2640
AlwI GGATC 9 cut(s) 1222, 1230, 1323, 1794, 2471, 2484, 2627, 2640, 2861
Ama87I CYCGRG 3 cut(s) 1718, 1931, 2403
AoxI GGCC 9 cut(s) 69, 308, 423, 960, 1536, 1668, 1884, 2065, 2651
ApeKI GCWGC 4 cut(s) 294, 529, 2879, 3022
ApoI RAATTY 5 cut(s) 19, 116, 1661, 1919, 2075
ArsI GACNNNNNNTTYG 2 cut(s) 2639, 2671
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 2 cut(s) 3033, 3035
AspS9I GGNCC 4 cut(s) 308, 834, 2066, 2450
AsuHPI GGTGA 7 cut(s) 132, 257, 473, 1170, 2119, 2333, 2937
AvaI CYCGRG 3 cut(s) 1718, 1931, 2403
AvaII GGWCC 2 cut(s) 834, 2450
AxyI CCTNAGG 1 cut(s) 1182
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BalI TGGCCA 1 cut(s) 2653
BamHI GGATCC 2 cut(s) 2476, 2632
BanI GGYRCC 1 cut(s) 2138
BanII GRGCYC 1 cut(s) 405
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
Bbv12I GWGCWC 3 cut(s) 405, 1596, 2814
BbvCI CCTCAGC 1 cut(s) 2108
BbvI GCAGC 4 cut(s) 281, 541, 2891, 3009
BccI CCATC 7 cut(s) 434, 586, 982, 1181, 1972, 2879, 2913
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 4 cut(s) 547, 581, 2190, 2224
BciT130I CCWGG 3 cut(s) 1244, 2155, 2852
BclI TGATCA 1 cut(s) 1741
BcoDI GTCTC 7 cut(s) 351, 535, 1100, 1133, 1567, 2406, 2640
BfaI CTAG 3 cut(s) 149, 614, 1322
BfmI CTRYAG 2 cut(s) 371, 1470
BfrI CTTAAG 2 cut(s) 1970, 2960
BfuAI ACCTGC 2 cut(s) 928, 1357
BglII AGATCT 1 cut(s) 205
BisI GCNGC 6 cut(s) 295, 530, 1163, 1671, 2880, 3023
BlpI GCTNAGC 2 cut(s) 260, 2683
BlsI GCNGC 6 cut(s) 296, 531, 1164, 1672, 2881, 3024
BmcAI AGTACT 1 cut(s) 1231
Bme1390I CCNGG 3 cut(s) 1244, 2155, 2852
Bme18I GGWCC 2 cut(s) 834, 2450
BmeRI GACNNNNNGTC 1 cut(s) 2731
BmeT110I CYCGRG 3 cut(s) 1718, 1931, 2403
BmgBI CACGTC 1 cut(s) 1027
BmgT120I GGNCC 4 cut(s) 308, 834, 2066, 2450
BmiI GGNNCC 6 cut(s) 356, 2068, 2140, 2478, 2634, 2779
BmrFI CCNGG 3 cut(s) 1244, 2155, 2852
BoxI GACNNNNGTC 1 cut(s) 2931
BpmI CTGGAG 1 cut(s) 2278
Bpu10I CCTNAGC 2 cut(s) 1865, 2108
Bpu1102I GCTNAGC 2 cut(s) 260, 2683
BpuEI CTTGAG 1 cut(s) 1873
BsaBI GATNNNNATC 2 cut(s) 992, 1483
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 837, 963
BsaWI WCCGGW 2 cut(s) 1378, 2558
BsaXI ACNNNNNCTCC 4 cut(s) 1097, 1127, 1182, 1212
Bse1I ACTGG 3 cut(s) 2295, 2452, 2654
Bse21I CCTNAGG 1 cut(s) 1182
Bse3DI GCAATG 1 cut(s) 2253
Bse8I GATNNNNATC 2 cut(s) 992, 1483
BseBI CCWGG 3 cut(s) 1244, 2155, 2852
BseDI CCNNGG 2 cut(s) 837, 963
BseGI GGATG 6 cut(s) 541, 904, 1192, 1387, 1822, 2924
BseJI GATNNNNATC 2 cut(s) 992, 1483
BseMI GCAATG 1 cut(s) 2253
BseMII CTCAG 8 cut(s) 904, 1173, 1919, 2016, 2099, 2253, 2472, 2903
BseNI ACTGG 3 cut(s) 2295, 2452, 2654
BsePI GCGCGC 1 cut(s) 3031
BseRI GAGGAG 6 cut(s) 606, 677, 1151, 1580, 1874, 2770
BseXI GCAGC 4 cut(s) 281, 541, 2891, 3009
BseYI CCCAGC 1 cut(s) 2797
BsgI GTGCAG 3 cut(s) 1049, 1335, 2737
Bsh1236I CGCG 1 cut(s) 3033
BshFI GGCC 9 cut(s) 71, 310, 425, 962, 1538, 1670, 1886, 2067, 2653
BshNI GGYRCC 1 cut(s) 2138
BsiHKAI GWGCWC 3 cut(s) 405, 1596, 2814
BsiHKCI CYCGRG 3 cut(s) 1718, 1931, 2403
BsiSI CCGG 4 cut(s) 1379, 2559, 2710, 2794
BslFI GGGAC 2 cut(s) 2826, 2969
BsmAI GTCTC 7 cut(s) 351, 535, 1100, 1133, 1567, 2406, 2640
BsmFI GGGAC 2 cut(s) 2826, 2969
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 9 cut(s) 71, 310, 425, 962, 1538, 1670, 1886, 2067, 2653
Bso31I GGTCTC 1 cut(s) 351
BsoBI CYCGRG 3 cut(s) 1718, 1931, 2403
Bsp1286I GDGCHC 3 cut(s) 405, 1596, 2814
Bsp1407I TGTACA 2 cut(s) 1300, 2659
Bsp1720I GCTNAGC 2 cut(s) 260, 2683
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 5 cut(s) 277, 1163, 1313, 1671, 1733
BspANI GGCC 9 cut(s) 71, 310, 425, 962, 1538, 1670, 1886, 2067, 2653
BspCNI CTCAG 8 cut(s) 903, 1174, 1918, 2017, 2100, 2254, 2473, 2904
BspFNI CGCG 1 cut(s) 3033
BspHI TCATGA 1 cut(s) 2935
BspLI GGNNCC 6 cut(s) 356, 2068, 2140, 2478, 2634, 2779
BspMAI CTGCAG 1 cut(s) 1474
BspMI ACCTGC 2 cut(s) 928, 1357
BspPI GGATC 9 cut(s) 1222, 1230, 1323, 1794, 2471, 2484, 2627, 2640, 2861
BspQI GCTCTTC 4 cut(s) 923, 1323, 2802, 3003
BspT107I GGYRCC 1 cut(s) 2138
BspTI CTTAAG 2 cut(s) 1970, 2960
BspTNI GGTCTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 2253
BsrGI TGTACA 2 cut(s) 1300, 2659
BsrI ACTGG 3 cut(s) 2295, 2452, 2654
BssECI CCNNGG 2 cut(s) 837, 963
BssHII GCGCGC 1 cut(s) 3031
BssNAI GTATAC 1 cut(s) 134
BssT1I CCWWGG 2 cut(s) 837, 963
Bst1107I GTATAC 1 cut(s) 134
Bst2UI CCWGG 3 cut(s) 1244, 2155, 2852
Bst4CI ACNGT 9 cut(s) 199, 375, 1363, 1531, 1600, 2381, 2595, 2673, 2930
Bst6I CTCTTC 8 cut(s) 147, 729, 912, 923, 1323, 1395, 2802, 3003
BstAFI CTTAAG 2 cut(s) 1970, 2960
BstAPI GCANNNNNTGC 1 cut(s) 294
BstAUI TGTACA 2 cut(s) 1300, 2659
BstC8I GCNNGC 6 cut(s) 566, 1470, 2143, 2241, 2680, 3033
BstDSI CCRYGG 1 cut(s) 963
BstENI CCTNNNNNAGG 2 cut(s) 42, 2640
BstF5I GGATG 6 cut(s) 541, 904, 1192, 1387, 1822, 2924
BstFNI CGCG 1 cut(s) 3033
BstHHI GCGC 2 cut(s) 3033, 3035
BstMAI GTCTC 7 cut(s) 351, 535, 1100, 1133, 1567, 2406, 2640
BstMWI GCNNNNNNNGC 7 cut(s) 285, 294, 300, 422, 2684, 2715, 3028
BstNI CCWGG 3 cut(s) 1244, 2155, 2852
BstNSI RCATGY 5 cut(s) 568, 1055, 1081, 1162, 2876
BstPAI GACNNNNGTC 1 cut(s) 2931
BstSCI CCNGG 3 cut(s) 1242, 2153, 2850
BstSFI CTRYAG 2 cut(s) 371, 1470
BstUI CGCG 1 cut(s) 3033
BstV1I GCAGC 4 cut(s) 281, 541, 2891, 3009
BstX2I RGATCY 7 cut(s) 205, 1222, 1315, 1786, 2476, 2632, 2866
BstXI CCANNNNNNTGG 2 cut(s) 2154, 2235
BstYI RGATCY 7 cut(s) 205, 1222, 1315, 1786, 2476, 2632, 2866
BstZ17I GTATAC 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 1182
BsuRI GGCC 9 cut(s) 71, 310, 425, 962, 1538, 1670, 1886, 2067, 2653
BtgI CCRYGG 1 cut(s) 963
BtgZI GCGATG 1 cut(s) 1449
BtrI CACGTC 1 cut(s) 1027
BtsCI GGATG 6 cut(s) 541, 904, 1192, 1387, 1822, 2924
BtsIMutI CAGTG 2 cut(s) 2022, 2935
BveI ACCTGC 2 cut(s) 928, 1357
Cac8I GCNNGC 6 cut(s) 566, 1470, 2143, 2241, 2680, 3033
CciI TCATGA 1 cut(s) 2935
CfoI GCGC 2 cut(s) 3033, 3035
Cfr13I GGNCC 4 cut(s) 308, 834, 2066, 2450
DraI TTTAAA 3 cut(s) 94, 108, 180
DriI GACNNNNNGTC 1 cut(s) 2731
EaeI YGGCCR 2 cut(s) 69, 2651
Eam1104I CTCTTC 8 cut(s) 147, 729, 912, 923, 1323, 1395, 2802, 3003
Eam1105I GACNNNNNGTC 1 cut(s) 2731
EarI CTCTTC 8 cut(s) 147, 729, 912, 923, 1323, 1395, 2802, 3003
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 837, 963
Eco147I AGGCCT 1 cut(s) 1886
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 834, 2450
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 4 cut(s) 1032, 1164, 2826, 3021
Eco81I CCTNAGG 1 cut(s) 1182
Eco88I CYCGRG 3 cut(s) 1718, 1931, 2403
EcoICRI GAGCTC 1 cut(s) 403
EcoNI CCTNNNNNAGG 2 cut(s) 42, 2640
EcoO109I RGGNCCY 2 cut(s) 308, 2066
EcoRI GAATTC 2 cut(s) 116, 2075
EcoRII CCWGG 3 cut(s) 1242, 2153, 2850
EcoT14I CCWWGG 2 cut(s) 837, 963
EcoT22I ATGCAT 1 cut(s) 2602
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 2 cut(s) 837, 963
FalI AAGNNNNNCTT 2 cut(s) 1658, 1690
FaqI GGGAC 2 cut(s) 2826, 2969
FbaI TGATCA 1 cut(s) 1741
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 6 cut(s) 295, 530, 1163, 1671, 2880, 3023
FokI GGATG 6 cut(s) 548, 911, 1199, 1394, 1829, 2931
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 6 cut(s) 295, 530, 1163, 1671, 2880, 3023
FspBI CTAG 3 cut(s) 149, 614, 1322
GlaI GCGC 2 cut(s) 3032, 3034
GluI GCNGC 6 cut(s) 295, 530, 1163, 1671, 2880, 3023
GsaI CCCAGC 1 cut(s) 2801
GsuI CTGGAG 1 cut(s) 2278
HaeIII GGCC 9 cut(s) 71, 310, 425, 962, 1538, 1670, 1886, 2067, 2653
HapII CCGG 4 cut(s) 1379, 2559, 2710, 2794
HhaI GCGC 2 cut(s) 3033, 3035
Hin6I GCGC 2 cut(s) 3031, 3033
HinP1I GCGC 2 cut(s) 3031, 3033
HincII GTYRAC 2 cut(s) 471, 2556
HindII GTYRAC 2 cut(s) 471, 2556
HindIII AAGCTT 1 cut(s) 788
HpaI GTTAAC 1 cut(s) 2556
HpaII CCGG 4 cut(s) 1379, 2559, 2710, 2794
HphI GGTGA 7 cut(s) 132, 257, 473, 1170, 2119, 2333, 2937
Hpy166II GTNNAC 7 cut(s) 76, 134, 471, 1346, 1387, 2300, 2556
Hpy8I GTNNAC 7 cut(s) 76, 134, 471, 1346, 1387, 2300, 2556
HpyAV CCTTC 8 cut(s) 517, 949, 1007, 1139, 1185, 1259, 1976, 3040
HpyCH4III ACNGT 9 cut(s) 199, 375, 1363, 1531, 1600, 2381, 2595, 2673, 2930
HpyCH4IV ACGT 4 cut(s) 127, 171, 1026, 3055
HpyF10VI GCNNNNNNNGC 7 cut(s) 285, 294, 300, 422, 2684, 2715, 3028
HpySE526I ACGT 4 cut(s) 127, 171, 1026, 3055
HspAI GCGC 2 cut(s) 3031, 3033
Ksp22I TGATCA 1 cut(s) 1741
KspAI GTTAAC 1 cut(s) 2556
LguI GCTCTTC 4 cut(s) 923, 1323, 2802, 3003
LmnI GCTCC 7 cut(s) 354, 379, 526, 580, 1762, 1861, 2783
Lsp1109I GCAGC 4 cut(s) 281, 541, 2891, 3009
MaeI CTAG 3 cut(s) 149, 614, 1322
MaeII ACGT 4 cut(s) 127, 171, 1026, 3055
MaeIII GTNAC 6 cut(s) 1022, 1252, 1408, 2018, 2125, 2375
MfeI CAATTG 1 cut(s) 289
MflI RGATCY 7 cut(s) 205, 1222, 1315, 1786, 2476, 2632, 2866
MhlI GDGCHC 3 cut(s) 405, 1596, 2814
MlsI TGGCCA 1 cut(s) 2653
MluNI TGGCCA 1 cut(s) 2653
MlyI GAGTC 5 cut(s) 139, 1112, 1710, 1745, 2152
MmeI TCCRAC 6 cut(s) 7, 357, 1095, 1456, 2598, 2842
Mox20I TGGCCA 1 cut(s) 2653
Mph1103I ATGCAT 1 cut(s) 2602
MroXI GAANNNNTTC 1 cut(s) 906
MscI TGGCCA 1 cut(s) 2653
MslI CAYNNNNRTG 6 cut(s) 1050, 1839, 1898, 2027, 2233, 2692
Msp20I TGGCCA 1 cut(s) 2653
MspA1I CMGCKG 3 cut(s) 1313, 1448, 1747
MspCI CTTAAG 2 cut(s) 1970, 2960
MspI CCGG 4 cut(s) 1379, 2559, 2710, 2794
MspR9I CCNGG 3 cut(s) 1244, 2155, 2852
MunI CAATTG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 3 cut(s) 1244, 2155, 2852
MvnI CGCG 1 cut(s) 3033
MwoI GCNNNNNNNGC 7 cut(s) 285, 294, 300, 422, 2684, 2715, 3028
NcoI CCATGG 1 cut(s) 963
NlaIV GGNNCC 6 cut(s) 356, 2068, 2140, 2478, 2634, 2779
NmeAIII GCCGAG 1 cut(s) 1100
NmuCI GTSAC 5 cut(s) 1022, 1252, 2018, 2125, 2375
NsiI ATGCAT 1 cut(s) 2602
NspI RCATGY 5 cut(s) 568, 1055, 1081, 1162, 2876
OliI CACNNNNGTG 1 cut(s) 2027
PacI TTAATTAA 1 cut(s) 3067
PaeI GCATGC 1 cut(s) 568
PaeR7I CTCGAG 2 cut(s) 1718, 2403
PagI TCATGA 1 cut(s) 2935
PauI GCGCGC 1 cut(s) 3031
PceI AGGCCT 1 cut(s) 1886
PciI ACATGT 1 cut(s) 2872
PciSI GCTCTTC 4 cut(s) 923, 1323, 2802, 3003
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 6 cut(s) 33, 902, 968, 1286, 2606, 2977
PflMI CCANNNNNTGG 1 cut(s) 1249
PfoI TCCNGGA 1 cut(s) 2850
PkrI GCNGC 6 cut(s) 296, 531, 1164, 1672, 2881, 3024
PleI GAGTC 5 cut(s) 139, 1112, 1710, 1744, 2152
PpsI GAGTC 5 cut(s) 139, 1112, 1710, 1744, 2152
PscI ACATGT 1 cut(s) 2872
PshAI GACNNNNGTC 1 cut(s) 2931
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 1242, 2153, 2850
PspFI CCCAGC 1 cut(s) 2797
PspGI CCWGG 3 cut(s) 1242, 2153, 2850
PspN4I GGNNCC 6 cut(s) 356, 2068, 2140, 2478, 2634, 2779
PspPI GGNCC 4 cut(s) 308, 834, 2066, 2450
PsrI GAACNNNNNNTAC 2 cut(s) 807, 839
PstI CTGCAG 1 cut(s) 1474
PsuI RGATCY 7 cut(s) 205, 1222, 1315, 1786, 2476, 2632, 2866
PteI GCGCGC 1 cut(s) 3031
PvuII CAGCTG 2 cut(s) 1448, 1747
RseI CAYNNNNRTG 6 cut(s) 1050, 1839, 1898, 2027, 2233, 2692
SacI GAGCTC 1 cut(s) 405
SapI GCTCTTC 4 cut(s) 923, 1323, 2802, 3003
SatI GCNGC 6 cut(s) 295, 530, 1163, 1671, 2880, 3023
Sau96I GGNCC 4 cut(s) 308, 834, 2066, 2450
ScaI AGTACT 1 cut(s) 1231
SchI GAGTC 5 cut(s) 139, 1112, 1710, 1745, 2152
ScrFI CCNGG 3 cut(s) 1244, 2155, 2852
SduI GDGCHC 3 cut(s) 405, 1596, 2814
SfcI CTRYAG 2 cut(s) 371, 1470
Sfr274I CTCGAG 2 cut(s) 1718, 2403
SinI GGWCC 2 cut(s) 834, 2450
SlaI CTCGAG 2 cut(s) 1718, 2403
SmiMI CAYNNNNRTG 6 cut(s) 1050, 1839, 1898, 2027, 2233, 2692
SmlI CTYRAG 5 cut(s) 1718, 1888, 1970, 2403, 2960
SmoI CTYRAG 5 cut(s) 1718, 1888, 1970, 2403, 2960
SphI GCATGC 1 cut(s) 568
SseBI AGGCCT 1 cut(s) 1886
SsiI CCGC 5 cut(s) 277, 1163, 1313, 1671, 1733
SspI AATATT 1 cut(s) 2341
SspMI CTAG 3 cut(s) 149, 614, 1322
SstI GAGCTC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 1886
StyD4I CCNGG 3 cut(s) 1242, 2153, 2850
StyI CCWWGG 2 cut(s) 837, 963
TaaI ACNGT 9 cut(s) 199, 375, 1363, 1531, 1600, 2381, 2595, 2673, 2930
TaiI ACGT 4 cut(s) 130, 174, 1029, 3058
TaqI TCGA 8 cut(s) 114, 1493, 1719, 1951, 2200, 2245, 2404, 2967
TaqII GACCGA 1 cut(s) 413
TatI WGTACW 6 cut(s) 1198, 1229, 1300, 2314, 2590, 2659
TauI GCSGC 2 cut(s) 1165, 1673
TfiI GAWTC 6 cut(s) 33, 902, 968, 1286, 2606, 2977
TscAI CASTG 2 cut(s) 2029, 2935
TseFI GTSAC 5 cut(s) 1022, 1252, 2018, 2125, 2375
TseI GCWGC 4 cut(s) 294, 529, 2879, 3022
Tsp45I GTSAC 5 cut(s) 1022, 1252, 2018, 2125, 2375
TspGWI ACGGA 2 cut(s) 1277, 1404
TspRI CASTG 2 cut(s) 2029, 2935
Van91I CCANNNNNTGG 1 cut(s) 1249
Vha464I CTTAAG 2 cut(s) 1970, 2960
VpaK11BI GGWCC 2 cut(s) 834, 2450
XagI CCTNNNNNAGG 2 cut(s) 42, 2640
XapI RAATTY 5 cut(s) 19, 116, 1661, 1919, 2075
XbaI TCTAGA 1 cut(s) 148
XceI RCATGY 5 cut(s) 568, 1055, 1081, 1162, 2876
XhoI CTCGAG 2 cut(s) 1718, 2403
XmiI GTMKAC 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 3 cut(s) 149, 614, 1322
ZrmI AGTACT 1 cut(s) 1231
Zsp2I ATGCAT 1 cut(s) 2602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.