Rh7CG082400

Calmodulin binding protein-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
6002562 .. 6003680
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG082400.1

Sequence Viewer

Length: 1119 bp
ATGACGTCTCTGGCTCTAACCTTTCTGGGAGGAGCCCCTTTTCAACTGCTGTATGAAGGCGTTAAGATAGCTATTCGCAAAAGTAACAAGTTTAGAACTCACCTCGAAAATCTGGAAATGACGCTAGGCTGTTTGCAACCATGGATCATTCAACAGATAAGAGCAAATAATGTGCAACTGAATCTCCCAAACAATTTGATACAAGATCTTGAAATAAAAATGGAGGAGGGCAAAGAGCTGGTTTACAAGTTATCAAGGCTTGGCGTTTGGAACATCCGTGTCTGGGAAAATTGCTACAATTGTATAAAGCCTAATTACGCAGACCAACTTGCTGCATTGGACAGATCTCTTAGATTACTATTAGAAATACTAAAGCTGGAGGAAATGAGGAATGTTCAGGAGAACTTACTATTGGCGAGGAACCACAGTGACAAACAAGATGATTTGGACAAAAAAATGTCCGAGTTATTGAAAGTGCACCAGGAAGTTCTGAAAGCGCAGAAAGAAATGCTTGATATGATGAGAGTGCAGCATGAGGCTGTACATGAGGCAATGCAGAGAATTAGAGCTGATGCTGTGCAAAATGTGCAAGGAGAAACTGCCTCTGCTCCAGCTCCAGCACTAAGAATACTATTTTGGATGCTGTGTGATGTTGTTATACAAGTGAAGGTCAAGAATACAATGTGTAAACGCCTCCTTCAAGAATTCAAATCCACGCTCGACTTCTTAAAACCACTGATAGAAGAAATGGCAGAAAGTAACAAACTATTGCATCTTCCAGAGCAGGAACAAGAGAAGTTTATTATTCAAATGAGGGAGGGTGTAGAGCTCATTGACAAGTGCTCCAAGGTTAGCAAGTGGCATAGTTACAAAAAGTATGCATGCACCAACAAACTTCTTAAATTAGATGAATCTCTCCAGGGGCTATTCCATAAAATGACTATGAAGATTGCAATCCATGTGAAGGAAGGTTTGATTTCGGTAAGTAGTATGGAGGCAATGATCAAGAAAATTGAAGAGAGTGGTGTGATACAAAATCAAATTCAAGTTGTACTCACTAAACCACAACCTCCACTGCATGAAGCTGGATTGGATGTTCTGGATACGCATGGAAGCTAG

Protein Analysis

372

Amino Acids

42.88

Weight (kDa)

7.63

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 11 - 137 2.4e-12 Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8 PF05659 207 - 336 1.6e-19 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 704, 1041
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 543, 1053
AfiI CCNNNNNNNGG 2 cut(s) 283, 964
AgsI TTSAA 9 cut(s) 44, 152, 212, 472, 701, 709, 809, 1016, 1046
AjnI CCWGG 2 cut(s) 480, 918
AjuI GAANNNNNNNTTGG 4 cut(s) 395, 427, 619, 651
AloI GAACNNNNNNTCC 2 cut(s) 1080, 1112
AluBI AGCT 8 cut(s) 71, 238, 376, 569, 614, 829, 1085, 1116
AluI AGCT 8 cut(s) 71, 238, 376, 569, 614, 829, 1085, 1116
Alw21I GWGCWC 3 cut(s) 480, 831, 845
Alw26I GTCTC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 476
AlwI GGATC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 476
ApeKI GCWGC 2 cut(s) 332, 529
ApoI RAATTY 2 cut(s) 704, 1041
AspLEI GCGC 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 480
BanII GRGCYC 2 cut(s) 37, 831
Bbv12I GWGCWC 3 cut(s) 480, 831, 845
BbvI GCAGC 2 cut(s) 319, 541
BciT130I CCWGG 2 cut(s) 482, 920
BciVI GTATCC 1 cut(s) 1096
BclI TGATCA 1 cut(s) 1002
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 125, 1117
BfuI GTATCC 1 cut(s) 1096
BglII AGATCT 2 cut(s) 205, 344
BisI GCNGC 2 cut(s) 333, 530
BlsI GCNGC 2 cut(s) 334, 531
Bme1390I CCNGG 2 cut(s) 482, 920
BmiI GGNNCC 2 cut(s) 34, 422
BmrFI CCNGG 2 cut(s) 482, 920
BmsI GCATC 3 cut(s) 562, 630, 781
BpmI CTGGAG 4 cut(s) 398, 594, 600, 902
BsaBI GATNNNNATC 1 cut(s) 953
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 140, 846, 919
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 827, 857
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 964
Bse3DI GCAATG 2 cut(s) 558, 1005
Bse8I GATNNNNATC 1 cut(s) 953
BseBI CCWGG 2 cut(s) 482, 920
BseDI CCNNGG 3 cut(s) 140, 846, 919
BseGI GGATG 3 cut(s) 273, 645, 1099
BseJI GATNNNNATC 1 cut(s) 953
BseLI CCNNNNNNNGG 2 cut(s) 283, 964
BseMI GCAATG 2 cut(s) 558, 1005
BseRI GAGGAG 2 cut(s) 45, 239
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 2 cut(s) 319, 541
BsgI GTGCAG 1 cut(s) 548
BsiHKAI GWGCWC 3 cut(s) 480, 831, 845
BslI CCNNNNNNNGG 2 cut(s) 283, 964
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
Bsp1286I GDGCHC 4 cut(s) 37, 480, 831, 845
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 4 cut(s) 144, 205, 344, 1002
Bsp19I CCATGG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 34, 422
BspPI GGATC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 558, 1005
BsrGI TGTACA 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 140, 846, 919
BssMI GATC 4 cut(s) 144, 205, 344, 1002
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 140, 846
Bst2UI CCWGG 2 cut(s) 482, 920
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 1011
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 883
BstDEI CTNAG 2 cut(s) 350, 623
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 273, 645, 1099
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 4 cut(s) 147, 208, 347, 1005
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 4 cut(s) 144, 205, 344, 1002
BstMWI GCNNNNNNNGC 1 cut(s) 586
BstNI CCWGG 2 cut(s) 482, 920
BstNSI RCATGY 1 cut(s) 885
BstSCI CCNGG 2 cut(s) 480, 918
BstSLI GKGCMC 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 319, 541
BstX2I RGATCY 2 cut(s) 205, 344
BstYI RGATCY 2 cut(s) 205, 344
BsuI GTATCC 1 cut(s) 1096
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 3 cut(s) 273, 645, 1099
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 3 cut(s) 433, 734, 1073
Cac8I GCNNGC 1 cut(s) 883
CfoI GCGC 1 cut(s) 499
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 542, 1052
CviAII CATG 7 cut(s) 141, 533, 545, 882, 959, 1079, 1109
CviQI GTAC 2 cut(s) 542, 1052
DdeI CTNAG 2 cut(s) 350, 623
DpnI GATC 4 cut(s) 146, 207, 346, 1004
DpnII GATC 4 cut(s) 144, 205, 344, 1002
Eam1104I CTCTTC 1 cut(s) 1011
EarI CTCTTC 1 cut(s) 1011
Ecl136II GAGCTC 1 cut(s) 829
Eco130I CCWWGG 2 cut(s) 140, 846
Eco24I GRGCYC 2 cut(s) 37, 831
Eco53kI GAGCTC 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 829
EcoRI GAATTC 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 480, 918
EcoT14I CCWWGG 2 cut(s) 140, 846
EcoT22I ATGCAT 1 cut(s) 883
EcoT38I GRGCYC 2 cut(s) 37, 831
ErhI CCWWGG 2 cut(s) 140, 846
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 7 cut(s) 144, 536, 548, 885, 962, 1082, 1112
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 7 cut(s) 140, 532, 544, 881, 958, 1078, 1108
FbaI TGATCA 1 cut(s) 1002
Fnu4HI GCNGC 2 cut(s) 333, 530
FokI GGATG 3 cut(s) 260, 652, 1106
FriOI GRGCYC 2 cut(s) 37, 831
Fsp4HI GCNGC 2 cut(s) 333, 530
FspBI CTAG 2 cut(s) 125, 1117
GlaI GCGC 1 cut(s) 498
GluI GCNGC 2 cut(s) 333, 530
GsuI CTGGAG 4 cut(s) 398, 594, 600, 902
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 144, 536, 548, 885, 962, 1082, 1112
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HinfI GANTC 2 cut(s) 181, 911
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 3 cut(s) 244, 478, 689
Hpy188I TCNGA 2 cut(s) 463, 492
Hpy188III TCNNGA 8 cut(s) 113, 209, 398, 673, 701, 779, 1006, 1100
Hpy8I GTNNAC 3 cut(s) 244, 478, 689
HpyAV CCTTC 5 cut(s) 50, 661, 707, 958, 962
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 1 cut(s) 586
HpyF3I CTNAG 2 cut(s) 350, 623
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 144, 536, 548, 885, 962, 1082, 1112
HspAI GCGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 1002
Kzo9I GATC 4 cut(s) 144, 205, 344, 1002
LmnI GCTCC 4 cut(s) 32, 613, 619, 848
Lsp1109I GCAGC 2 cut(s) 319, 541
LweI GCATC 3 cut(s) 562, 630, 781
MaeI CTAG 2 cut(s) 125, 1117
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 4 cut(s) 83, 428, 758, 866
MalI GATC 4 cut(s) 146, 207, 346, 1004
MboI GATC 4 cut(s) 144, 205, 344, 1002
MboII GAAGA 4 cut(s) 755, 767, 958, 1028
MfeI CAATTG 1 cut(s) 298
MflI RGATCY 2 cut(s) 205, 344
MhlI GDGCHC 4 cut(s) 37, 480, 831, 845
MluCI AATT 9 cut(s) 193, 289, 298, 313, 561, 704, 902, 1011, 1041
Mph1103I ATGCAT 1 cut(s) 883
MseI TTAA 3 cut(s) 63, 728, 900
MspR9I CCNGG 2 cut(s) 482, 920
MunI CAATTG 1 cut(s) 298
MvaI CCWGG 2 cut(s) 482, 920
MwoI GCNNNNNNNGC 1 cut(s) 586
NcoI CCATGG 1 cut(s) 140
NdeII GATC 4 cut(s) 144, 205, 344, 1002
NlaIII CATG 7 cut(s) 144, 536, 548, 885, 962, 1082, 1112
NlaIV GGNNCC 2 cut(s) 34, 422
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 1 cut(s) 885
PaeI GCATGC 1 cut(s) 885
PfeI GAWTC 2 cut(s) 181, 911
PkrI GCNGC 2 cut(s) 334, 531
Psp124BI GAGCTC 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 480, 918
PspGI CCWGG 2 cut(s) 480, 918
PspN4I GGNNCC 2 cut(s) 34, 422
PsuI RGATCY 2 cut(s) 205, 344
RsaI GTAC 2 cut(s) 543, 1053
RsaNI GTAC 2 cut(s) 542, 1052
SacI GAGCTC 1 cut(s) 831
SaqAI TTAA 3 cut(s) 63, 728, 900
SatI GCNGC 2 cut(s) 333, 530
Sau3AI GATC 4 cut(s) 144, 205, 344, 1002
ScrFI CCNGG 2 cut(s) 482, 920
SduI GDGCHC 4 cut(s) 37, 480, 831, 845
SfaNI GCATC 3 cut(s) 562, 630, 781
SphI GCATGC 1 cut(s) 885
Sse9I AATT 9 cut(s) 193, 289, 298, 313, 561, 704, 902, 1011, 1041
SspMI CTAG 2 cut(s) 125, 1117
SstI GAGCTC 1 cut(s) 831
StyD4I CCNGG 2 cut(s) 480, 918
StyI CCWWGG 2 cut(s) 140, 846
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 105, 720
TasI AATT 9 cut(s) 193, 289, 298, 313, 561, 704, 902, 1011, 1041
TatI WGTACW 2 cut(s) 541, 1051
TfiI GAWTC 2 cut(s) 181, 911
Tru1I TTAA 3 cut(s) 63, 728, 900
Tru9I TTAA 3 cut(s) 63, 728, 900
TscAI CASTG 3 cut(s) 433, 741, 1080
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 332, 529
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 4 cut(s) 69, 924, 959, 1095
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 3 cut(s) 433, 741, 1080
VneI GTGCAC 1 cut(s) 476
XapI RAATTY 2 cut(s) 704, 1041
XceI RCATGY 1 cut(s) 885
XspI CTAG 2 cut(s) 125, 1117
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.