Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Reverse (-)

61049563 .. 61064737

Gene Structure 15175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTACCATGAGCACCGTTCAATGGCTAGAAGAAGTCGCCATGGATGATATGATCAACATGCTTATGAAGTGGTACTTAAGAGAGCCTCGCTCCACCGACATCTCTCTCTACTTCCCTGCTCAATCAGCATTTAGTACCATCAATCAGATAAGAGACCATAATGTGGAGCTGAATCTCCCAACCGATATAATTCAAGACCTGCAAGTAAAAATGGATGATGGTGTGGCACTCATTGCCAATTTATCTAGGCTTAGAATGTGGAACTGTCGCGTTTGGGGGGACTGTTGCAACTGCATGAAGCCTAGCTACGCAGACCAACTTGCTGCATTGGATAGGTCTCTTCGTCGACTATTGGAGATACTAAAGCTGGAGCAGATGAGGAACGTGCTGGAGCTCTTGCTTTTGGCAAGAAGAACTAATGACAGACAAGATGACTTGGAGAGAAGACAGTTGGAAATTCTGAAAACCATGCAAGAAACCGGGGATATGTTAAGAGCGCAGCAGGAAGTAATGGAGAAAATTAAAAAGAATATTGGTGCTGCATCTTCAGACAGAGTAGGAGGGTCGGCTCCTGCTCCTGCTCTAGGAGCAGTATTTAGGGTGTTGTTTGATGTTGTTATCAGAGTAAAGGTCAAGAATATGATATATAAGCGCCTCCTCGAAGATTTTGAATCCACTCTTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002237 GO:0002239 GO:0002682 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032350 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0043902 GO:0044424 GO:0044464 GO:0045088 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071216 GO:0071219 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1900424 GO:1900426 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Calmodulin_bind

Protein Analysis

230

Amino Acids

26.57

Weight (kDa)

5.64

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	47 - 138	6.2e-07	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	349
AccII	CGCG	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	77, 139
AfiI	CCNNNNNNNGG	3 cut(s)	24, 166, 587
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	23, 197, 674
AluBI	AGCT	4 cut(s)	172, 309, 370, 397
AluI	AGCT	4 cut(s)	172, 309, 370, 397
Alw21I	GWGCWC	2 cut(s)	17, 399
Alw26I	GTCTC	2 cut(s)	150, 345
ApeKI	GCWGC	3 cut(s)	326, 502, 542
ApoI	RAATTY	1 cut(s)	459
AspLEI	GCGC	2 cut(s)	502, 657
AsuC2I	CCSGG	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbsI	GAAGAC	1 cut(s)	454
Bbv12I	GWGCWC	2 cut(s)	17, 399
BbvI	GCAGC	3 cut(s)	313, 514, 529
BccI	CCATC	2 cut(s)	149, 215
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	150, 345
BfaI	CTAG	4 cut(s)	29, 249, 306, 587
BfoI	RGCGCY	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	3 cut(s)	327, 503, 543
BlsI	GCNGC	3 cut(s)	328, 504, 544
Bme1390I	CCNGG	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	2 cut(s)	392, 413
BpuMI	CCSGG	1 cut(s)	484
BsaI	GGTCTC	2 cut(s)	150, 345
BsaJI	CCNNGG	2 cut(s)	42, 483
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 166, 587
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	42, 483
BseGI	GGATG	2 cut(s)	52, 223
BseLI	CCNNNNNNNGG	3 cut(s)	24, 166, 587
BseMI	GCAATG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	3 cut(s)	313, 514, 529
Bsh1236I	CGCG	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	17, 399
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	3 cut(s)	24, 166, 587
BsmAI	GTCTC	2 cut(s)	150, 345
BsmFI	GGGAC	1 cut(s)	296
Bso31I	GGTCTC	2 cut(s)	150, 345
Bsp1286I	GDGCHC	2 cut(s)	17, 399
Bsp143I	GATC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	573
BspMI	ACCTGC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	79
BspTNI	GGTCTC	2 cut(s)	150, 345
BsrDI	GCAATG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	42, 483
BssMI	GATC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	4 cut(s)	19, 269, 287, 453
Bst6I	CTCTTC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	52, 223
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	2 cut(s)	502, 657
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	150, 345
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 236, 590
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	482
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	3 cut(s)	313, 514, 529
BstV2I	GAAGAC	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	52, 223
BveI	ACCTGC	1 cut(s)	210
CfoI	GCGC	2 cut(s)	502, 657
Csp6I	GTAC	2 cut(s)	76, 138
CviAII	CATG	5 cut(s)	10, 43, 61, 298, 472
CviQI	GTAC	2 cut(s)	76, 138
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	2 cut(s)	150, 345
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	5 cut(s)	13, 46, 64, 301, 475
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	5 cut(s)	9, 42, 60, 297, 471
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	327, 503, 543
FokI	GGATG	2 cut(s)	59, 230
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	327, 503, 543
FspBI	CTAG	4 cut(s)	29, 249, 306, 587
GlaI	GCGC	2 cut(s)	501, 656
GluI	GCNGC	3 cut(s)	327, 503, 543
GsuI	CTGGAG	2 cut(s)	392, 413
HaeII	RGCGCY	1 cut(s)	658
HapII	CCGG	1 cut(s)	483
HhaI	GCGC	2 cut(s)	502, 657
Hin1II	CATG	5 cut(s)	13, 46, 64, 301, 475
Hin6I	GCGC	2 cut(s)	500, 655
HinP1I	GCGC	2 cut(s)	500, 655
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HinfI	GANTC	3 cut(s)	175, 674, 686
HpaII	CCGG	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	4 cut(s)	150, 465, 553, 626
Hpy188III	TCNNGA	4 cut(s)	197, 637, 683, 690
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	1 cut(s)	351
HpyCH4III	ACNGT	4 cut(s)	19, 269, 287, 453
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	6 cut(s)	205, 291, 297, 329, 475, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 236, 590
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	13, 46, 64, 301, 475
HspAI	GCGC	2 cut(s)	500, 655
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	7 cut(s)	98, 169, 373, 394, 577, 583, 590
LpnPI	CCDG	8 cut(s)	132, 215, 356, 377, 491, 496, 588, 594
Lsp1109I	GCAGC	3 cut(s)	313, 514, 529
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	4 cut(s)	29, 249, 306, 587
MaeII	ACGT	1 cut(s)	387
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	6 cut(s)	44, 335, 426, 459, 540, 677
MhlI	GDGCHC	2 cut(s)	17, 399
MluCI	AATT	4 cut(s)	192, 241, 459, 522
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	5 cut(s)	99, 375, 557, 668, 671
MseI	TTAA	3 cut(s)	80, 494, 525
MslI	CAYNNNNRTG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	484
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	128, 236, 590
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	5 cut(s)	13, 46, 64, 301, 475
NlaIV	GGNNCC	1 cut(s)	573
NspI	RCATGY	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	175, 674
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	328, 504, 544
Psp124BI	GAGCTC	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	573
RsaI	GTAC	2 cut(s)	77, 139
RsaNI	GTAC	2 cut(s)	76, 138
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	399
SalI	GTCGAC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	80, 494, 525
SatI	GCNGC	3 cut(s)	327, 503, 543
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	17, 399
SetI	ASST	8 cut(s)	174, 204, 311, 341, 372, 390, 399, 636
SfaNI	GCATC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	79, 683
SmoI	CTYRAG	2 cut(s)	79, 683
Sse9I	AATT	4 cut(s)	192, 241, 459, 522
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	4 cut(s)	29, 249, 306, 587
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	4 cut(s)	19, 269, 287, 453
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	349, 663
TasI	AATT	4 cut(s)	192, 241, 459, 522
TfiI	GAWTC	2 cut(s)	175, 674
Tru1I	TTAA	3 cut(s)	80, 494, 525
Tru9I	TTAA	3 cut(s)	80, 494, 525
TseI	GCWGC	3 cut(s)	326, 502, 542
TspDTI	ATGAA	2 cut(s)	83, 314
Van91I	CCANNNNNTGG	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	4 cut(s)	29, 249, 306, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.