pycom06g10840

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000408
Physical Location & Seq
Forward (+)
16087129 .. 16087677
549 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10840.1

Sequence Viewer

Length: 549 bp
ATGAAAATTGAAGAGATTGGTATCATACAACATGATCAAACAGAAAGTCGGCGTCGATTAGTTGAACTTCCATCGGGGGACCGGGGAGAGTCTTCGGGAAGTGGTGCAGAGACAACACCGCATGAACAAAATGGAGAGAATGGTGGACAACAAATGGCGCTGTCAGGTGGAGGAGTAGGGGCTGCTGCTCTAGGAGCGGCGTTAGCAAGGGATGCGAGGGATAGCTTGGTTTCCGTAAGCAATATAGAGGCGGTGATCAATCAAATTGGAGGAAGTGGTGTGGTAAAATTACAAAATGAGCAAAATGAAGCTAAAGGTTCAGGTGAAGTACCAGCAGCCATGGCTAAGAGTGCAGTTGGATTGAATGCACTAAGTATGGAGGGAACAAGGGACGTGACTGAGACATTGGATCCGGAAGTGAATATAAAGGTAGGGTGGCAGAAAGTTGAAGAGAGTTGGGTGGCACAAAGTAAAACTGAACATCCATCACGTATAGTTGGACTGGATGCAATGAACATGCAGGTGGAAGCAAGAAGTATACGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase zf-RVT

Protein Analysis

183

Amino Acids

19.09

Weight (kDa)

4.87

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 511
Acc36I ACCTGC 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 538
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 3 cut(s) 119, 197, 251
AclWI GGATC 2 cut(s) 404, 417
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 1 cut(s) 330
AgsI TTSAA 4 cut(s) 11, 65, 364, 449
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 2 cut(s) 225, 311
AluI AGCT 2 cut(s) 225, 311
Alw26I GTCTC 2 cut(s) 104, 395
AlwI GGATC 2 cut(s) 404, 417
Aor13HI TCCGGA 1 cut(s) 412
ApeKI GCWGC 3 cut(s) 182, 185, 335
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 265, 335
AvaII GGWCC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 409
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 169, 172, 347
BccI CCATC 2 cut(s) 79, 493
BclI TGATCA 2 cut(s) 34, 255
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 104, 395
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 511
BisI GCNGC 4 cut(s) 183, 186, 198, 336
BlsI GCNGC 4 cut(s) 184, 187, 199, 337
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 80, 411
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 202, 496
BpiI GAAGAC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 82, 339
BsaWI WCCGGW 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 507
Bse3DI GCAATG 1 cut(s) 516
Bse8I GATNNNNATC 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 82, 339
BseGI GGATG 3 cut(s) 217, 481, 511
BseJI GATNNNNATC 1 cut(s) 20
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 169, 172, 347
BsgI GTGCAG 2 cut(s) 126, 372
BsiSI CCGG 2 cut(s) 82, 413
BslFI GGGAC 2 cut(s) 92, 404
BsmAI GTCTC 2 cut(s) 104, 395
BsmFI GGGAC 2 cut(s) 92, 404
BsmI GAATGC 1 cut(s) 370
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 3 cut(s) 34, 255, 409
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 3 cut(s) 119, 197, 251
BspCNI CTCAG 1 cut(s) 391
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 80, 411
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 2 cut(s) 404, 417
BsrBI CCGCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 516
BsrI ACTGG 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 82, 339
BssMI GATC 3 cut(s) 34, 255, 409
BssNAI GTATAC 1 cut(s) 539
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 539
Bst6I CTCTTC 2 cut(s) 6, 444
BstACI GRCGYC 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 345, 371, 399
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 217, 481, 511
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 37, 258, 412
BstMAI GTCTC 2 cut(s) 104, 395
BstMBI GATC 3 cut(s) 34, 255, 409
BstMWI GCNNNNNNNGC 5 cut(s) 194, 203, 212, 341, 350
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 169, 172, 347
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BstZ17I GTATAC 1 cut(s) 539
BtgI CCRYGG 1 cut(s) 339
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 3 cut(s) 217, 481, 511
BveI ACCTGC 1 cut(s) 511
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 329
CviAII CATG 4 cut(s) 32, 122, 340, 517
CviJI RGCY 5 cut(s) 182, 225, 311, 338, 344
CviKI_1 RGCY 5 cut(s) 182, 225, 311, 338, 344
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 3 cut(s) 345, 371, 399
DpnI GATC 3 cut(s) 36, 257, 411
DpnII GATC 3 cut(s) 34, 255, 409
Eam1104I CTCTTC 2 cut(s) 6, 444
EarI CTCTTC 2 cut(s) 6, 444
Eco130I CCWWGG 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 4 cut(s) 35, 125, 343, 520
FaqI GGGAC 2 cut(s) 92, 404
FatI CATG 4 cut(s) 31, 121, 339, 516
FbaI TGATCA 2 cut(s) 34, 255
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 4 cut(s) 183, 186, 198, 336
FokI GGATG 3 cut(s) 224, 468, 518
Fsp4HI GCNGC 4 cut(s) 183, 186, 198, 336
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 159
GluI GCNGC 4 cut(s) 183, 186, 198, 336
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 2 cut(s) 82, 413
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 4 cut(s) 35, 125, 343, 520
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 89
HpaII CCGG 2 cut(s) 82, 413
HphI GGTGA 2 cut(s) 265, 335
Hpy166II GTNNAC 2 cut(s) 146, 539
Hpy188III TCNNGA 2 cut(s) 96, 413
Hpy8I GTNNAC 2 cut(s) 146, 539
Hpy99I CGWCG 1 cut(s) 57
HpyCH4IV ACGT 2 cut(s) 393, 490
HpyCH4V TGCA 5 cut(s) 107, 353, 368, 509, 520
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 203, 212, 341, 350
HpyF3I CTNAG 3 cut(s) 345, 371, 399
HpySE526I ACGT 2 cut(s) 393, 490
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 4 cut(s) 35, 125, 343, 520
HspAI GCGC 1 cut(s) 158
Kpn2I TCCGGA 1 cut(s) 412
Ksp22I TGATCA 2 cut(s) 34, 255
Kzo9I GATC 3 cut(s) 34, 255, 409
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 7 cut(s) 95, 150, 306, 345, 426, 488, 506
Lsp1109I GCAGC 3 cut(s) 169, 172, 347
LweI GCATC 2 cut(s) 202, 496
MaeI CTAG 1 cut(s) 191
MaeII ACGT 2 cut(s) 393, 490
MaeIII GTNAC 1 cut(s) 394
MalI GATC 3 cut(s) 36, 257, 411
MbiI CCGCTC 1 cut(s) 197
MboI GATC 3 cut(s) 34, 255, 409
MboII GAAGA 3 cut(s) 23, 84, 461
MflI RGATCY 1 cut(s) 409
MluCI AATT 3 cut(s) 6, 264, 287
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 337, 478
MnlI CCTC 5 cut(s) 164, 210, 241, 263, 373
MroI TCCGGA 1 cut(s) 412
MslI CAYNNNNRTG 1 cut(s) 521
MspI CCGG 2 cut(s) 82, 413
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 370
MwoI GCNNNNNNNGC 5 cut(s) 194, 203, 212, 341, 350
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 339
NdeII GATC 3 cut(s) 34, 255, 409
NlaIII CATG 4 cut(s) 35, 125, 343, 520
NlaIV GGNNCC 2 cut(s) 80, 411
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 520
PaqCI CACCTGC 1 cut(s) 511
PctI GAATGC 1 cut(s) 370
PkrI GCNGC 4 cut(s) 184, 187, 199, 337
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 80, 411
PspPI GGNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 521
SatI GCNGC 4 cut(s) 183, 186, 198, 336
Sau3AI GATC 3 cut(s) 34, 255, 409
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 83
SetI ASST 9 cut(s) 169, 227, 313, 319, 325, 396, 432, 493, 525
SfaNI GCATC 2 cut(s) 202, 496
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 521
Sse9I AATT 3 cut(s) 6, 264, 287
SsiI CCGC 3 cut(s) 119, 197, 251
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 339
TaiI ACGT 2 cut(s) 396, 493
TaqI TCGA 1 cut(s) 55
TasI AATT 3 cut(s) 6, 264, 287
TauI GCSGC 1 cut(s) 200
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 182, 185, 335
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 17, 138, 321, 527
TspGWI ACGGA 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 79
XceI RCATGY 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.