Prupe.5G127800_v2.0.a1
WRKY Family

WRKY Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000408
Physical Location & Seq
Forward (+)
12464144 .. 12465383
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G127800.1

Sequence Viewer

Length: 1026 bp
ATGGGCAAGAGGAGGACTGTTTTCAATGAGAAGTTTAGACCCCTTCTCAAAAATCTCAAATTCACACTAGATACTTTACTTCCACGTATCAGCCAACAGATGGGTGATGAAAACAACGTCAAATTGGGTCTGTTCAAAGACGAATTAGAAAGCCTTGGAAGACAAATGAAGGAGGGCACAAGGCTTCTTGTCAAGTTATCAAAGCCTATTAGTCTATGGAACTGTTGCATCTGGTACAATTGGTGCAACTACACAGAGCTTAGTTACATGGACCAACTTGTCCCATTGAACAAGTCTCTCACCATACTGTTAGAAACGCTAAAGCTGCTGCAAGAAGCAAGGGATGTTAAGGAGTGCTCGCTTTCGGACGACGAACAAGATGAATGGGAAAGAAGACTCTTAGACTTGCTGAGAGTGCAAACGGCAGGGAATGTGCAAGAATTTTCAGCAAGTAATGAAGAAGAAACCAAAGTGCATGGGCAAACTGTAGGAGAATTATTCTGGGTGATGTTCGATACCGTTGTAGAAGTGAAACACAAGAATAACATGTTCAAATGCCCCCTCCAACATATAAAATTGACGCTAGACTTCTTAAGGCCATATATAGGGATAGCAGAGCTGAATCTCCCGAACGAAGACTTAGAATTTGTTAGAATACAAATAGAGAAGGGTGTAGAACTCGTTCGCAAGTGCAACAAGCAAGCTAGATGCAAAAAGTACAAATATACCAACAAACTTTTTGAATTGAATCAATATTTTCAAGGACTTTTAGATATCCTGATGATGCGGCAAGCACGGAAGGTGAGGAAGTGCCATGAAACAGAGACGGTGATCAAGCGAATTGAAGAGAGTGGTGTGGTACAAAACCAAACTCAAATTGAATGTACCAAATTGGATCAAGATTTTCAAAGAGTGTTAAATATACTGAGGGCGTGGCTAGCAAGGAATGTGAGGAAGCAGTTTGGGGATGTGAGGGAAGGCTTGGTTTCATTGATCAAGCGAATTGAAGAGAGAGTGGTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

40.29

Weight (kDa)

8.79

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 100
AciI CCGC 1 cut(s) 787
AclWI GGATC 1 cut(s) 903
AcsI RAATTY 3 cut(s) 59, 440, 644
AfaI GTAC 4 cut(s) 236, 719, 861, 886
AfiI CCNNNNNNNGG 2 cut(s) 100, 605
AflII CTTAAG 1 cut(s) 592
AflIII ACRYGT 1 cut(s) 546
AluBI AGCT 4 cut(s) 259, 325, 619, 704
AluI AGCT 4 cut(s) 259, 325, 619, 704
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 2 cut(s) 300, 818
AlwI GGATC 1 cut(s) 903
AoxI GGCC 1 cut(s) 596
ApeKI GCWGC 2 cut(s) 325, 328
ApoI RAATTY 3 cut(s) 59, 440, 644
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
Asp700I GAANNNNTTC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 5 cut(s) 116, 292, 517, 814, 841
AsuNHI GCTAGC 1 cut(s) 937
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BbsI GAAGAC 3 cut(s) 166, 400, 642
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 312, 315
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 438
BclI TGATCA 2 cut(s) 831, 993
BcoDI GTCTC 2 cut(s) 300, 818
BfaI CTAG 4 cut(s) 68, 584, 705, 938
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 592
BisI GCNGC 3 cut(s) 326, 329, 788
BlsI GCNGC 3 cut(s) 327, 330, 789
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmsI GCATC 3 cut(s) 237, 698, 774
BmtI GCTAGC 1 cut(s) 941
BpiI GAAGAC 3 cut(s) 166, 400, 642
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 605
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 2 cut(s) 349, 973
BseLI CCNNNNNNNGG 2 cut(s) 100, 605
BseMII CTCAG 2 cut(s) 401, 917
BseRI GAGGAG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 2 cut(s) 312, 315
BshFI GGCC 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 359
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 100, 605
BsmAI GTCTC 2 cut(s) 300, 818
BsmBI CGTCTC 1 cut(s) 818
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 598
Bsp1286I GDGCHC 2 cut(s) 179, 359
Bsp143I GATC 3 cut(s) 831, 895, 993
BspACI CCGC 1 cut(s) 787
BspANI GGCC 1 cut(s) 598
BspCNI CTCAG 2 cut(s) 402, 918
BspOI GCTAGC 1 cut(s) 941
BspPI GGATC 1 cut(s) 903
BspTI CTTAAG 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 831, 895, 993
BssT1I CCWWGG 1 cut(s) 154
Bst4CI ACNGT 6 cut(s) 19, 224, 309, 487, 520, 829
Bst6I CTCTTC 2 cut(s) 840, 1002
BstAFI CTTAAG 1 cut(s) 592
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 4 cut(s) 359, 702, 792, 939
BstDEI CTNAG 5 cut(s) 260, 400, 410, 640, 926
BstF5I GGATG 2 cut(s) 349, 973
BstKTI GATC 3 cut(s) 834, 898, 996
BstMAI GTCTC 2 cut(s) 300, 818
BstMBI GATC 3 cut(s) 831, 895, 993
BstMWI GCNNNNNNNGC 3 cut(s) 325, 415, 938
BstNSI RCATGY 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 312, 315
BstV2I GAAGAC 3 cut(s) 166, 400, 642
BsuRI GGCC 1 cut(s) 598
BtsCI GGATG 2 cut(s) 349, 973
Cac8I GCNNGC 4 cut(s) 359, 702, 792, 939
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 589
Csp6I GTAC 4 cut(s) 235, 718, 860, 885
CviAII CATG 4 cut(s) 268, 476, 547, 815
CviQI GTAC 4 cut(s) 235, 718, 860, 885
DdeI CTNAG 5 cut(s) 260, 400, 410, 640, 926
DpnI GATC 3 cut(s) 833, 897, 995
DpnII GATC 3 cut(s) 831, 895, 993
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 840, 1002
EarI CTCTTC 2 cut(s) 840, 1002
Eco130I CCWWGG 1 cut(s) 154
Eco32I GATATC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 271
EcoRV GATATC 1 cut(s) 775
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 818
FaeI CATG 4 cut(s) 271, 479, 550, 818
FaqI GGGAC 1 cut(s) 266
FatI CATG 4 cut(s) 267, 475, 546, 814
FbaI TGATCA 2 cut(s) 831, 993
Fnu4HI GCNGC 3 cut(s) 326, 329, 788
FokI GGATG 2 cut(s) 356, 980
Fsp4HI GCNGC 3 cut(s) 326, 329, 788
FspBI CTAG 4 cut(s) 68, 584, 705, 938
GluI GCNGC 3 cut(s) 326, 329, 788
HaeIII GGCC 1 cut(s) 598
HgaI GACGC 1 cut(s) 589
Hin1II CATG 4 cut(s) 271, 479, 550, 818
HinfI GANTC 3 cut(s) 396, 622, 748
HphI GGTGA 5 cut(s) 116, 292, 517, 814, 841
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 3 cut(s) 628, 778, 899
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 5 cut(s) 53, 163, 661, 793, 971
HpyCH4III ACNGT 6 cut(s) 19, 224, 309, 487, 520, 829
HpyCH4IV ACGT 2 cut(s) 85, 117
HpyCH4V TGCA 8 cut(s) 228, 246, 331, 418, 436, 475, 693, 711
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 415, 938
HpyF3I CTNAG 5 cut(s) 260, 400, 410, 640, 926
HpySE526I ACGT 2 cut(s) 85, 117
Hsp92II CATG 4 cut(s) 271, 479, 550, 818
Ksp22I TGATCA 2 cut(s) 831, 993
Kzo9I GATC 3 cut(s) 831, 895, 993
LpnPI CCDG 4 cut(s) 217, 411, 487, 791
Lsp1109I GCAGC 2 cut(s) 312, 315
LweI GCATC 3 cut(s) 237, 698, 774
MaeI CTAG 4 cut(s) 68, 584, 705, 938
MaeII ACGT 2 cut(s) 85, 117
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 833, 897, 995
MboI GATC 3 cut(s) 831, 895, 993
MboII GAAGA 7 cut(s) 171, 405, 470, 473, 647, 857, 1019
MfeI CAATTG 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 179, 359
MlyI GAGTC 1 cut(s) 390
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 8 cut(s) 3, 6, 166, 572, 798, 921, 945, 966
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 3 cut(s) 348, 593, 917
MspCI CTTAAG 1 cut(s) 592
MunI CAATTG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 325, 415, 938
NdeII GATC 3 cut(s) 831, 895, 993
NheI GCTAGC 1 cut(s) 937
NlaIII CATG 4 cut(s) 271, 479, 550, 818
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 2 cut(s) 622, 748
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 3 cut(s) 327, 330, 789
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
Ppu21I YACGTR 1 cut(s) 86
PscI ACATGT 1 cut(s) 546
PspPI GGNCC 1 cut(s) 271
PsrI GAACNNNNNNTAC 2 cut(s) 666, 698
RsaI GTAC 4 cut(s) 236, 719, 861, 886
RsaNI GTAC 4 cut(s) 235, 718, 860, 885
SaqAI TTAA 3 cut(s) 348, 593, 917
SatI GCNGC 3 cut(s) 326, 329, 788
Sau3AI GATC 3 cut(s) 831, 895, 993
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 390
SduI GDGCHC 2 cut(s) 179, 359
SetI ASST 7 cut(s) 88, 120, 261, 327, 621, 706, 804
SfaNI GCATC 3 cut(s) 237, 698, 774
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
SsiI CCGC 1 cut(s) 787
SspI AATATT 1 cut(s) 755
SspMI CTAG 4 cut(s) 68, 584, 705, 938
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 6 cut(s) 19, 224, 309, 487, 520, 829
TaiI ACGT 2 cut(s) 88, 120
TaqI TCGA 1 cut(s) 513
TatI WGTACW 1 cut(s) 717
TauI GCSGC 1 cut(s) 790
TfiI GAWTC 2 cut(s) 622, 748
Tru1I TTAA 3 cut(s) 348, 593, 917
Tru9I TTAA 3 cut(s) 348, 593, 917
TseI GCWGC 2 cut(s) 325, 328
TspDTI ATGAA 6 cut(s) 123, 182, 396, 471, 831, 978
TspGWI ACGGA 1 cut(s) 811
Van91I CCANNNNNTGG 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 59, 440, 644
XceI RCATGY 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 4 cut(s) 68, 584, 705, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.