Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Forward (+)

9873567 .. 9875468

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0116000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTTCTTTGTCCACGTCTTGCTTCACTTGTTCTGTACTTCGAATCCCTTCTCTTCTTTCTCCTCAGAATCTCAATCAGAGGTCTTTGTTATCACTAACTGGGAACCCAGATCGAATTCGTGGCAATCGGATTGCATGCAAGAGCTTAAACTTCTGTTCGAAGGCTAGTCTGAGAGGGAATTTGGAGGCCACCGGAGTTCCGACGTCGGTGCCGGTGCGTGTGGCTCACGAGCTTCTTCTAGCCGGACACAAGTATTTGGATGTCAGGACTCCTGAAGAGTTTAGTGCAGGACATCCTTCTGGTGCAGTTAACATTCCTTACTTGTACAAAGTTGGATCAGGGATGTCAAAGAACCCAGAGTTTGTGAAGGAAGTGTCATCACATTTCAGAAAACATGATGAAATTATTGTTGGATGCCAGCTCGGCAAAAGATCAATGATGGCTGCAACTGATCTTGTAGCCGCTGGTTTCTCTGGGATTACAGACATAGCTGGTGGGTATGCTGCTTGGACTCAAAATAGACTTCCAACAGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

19.38

Weight (kDa)

9.25

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	85 - 173	4e-15	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	117, 181
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	2 cut(s)	39, 329
AjiI	CACGTC	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	4 cut(s)	147, 235, 424, 494
AluI	AGCT	4 cut(s)	147, 235, 424, 494
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	446, 506
ApoI	RAATTY	2 cut(s)	117, 181
Asp700I	GAANNNNTTC	1 cut(s)	49
AsuII	TTCGAA	2 cut(s)	43, 161
BanI	GGYRCC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	433, 493
BccI	CCATC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BfaI	CTAG	2 cut(s)	168, 242
BglI	GCCNNNNNGGC	1 cut(s)	426
BisI	GCNGC	3 cut(s)	447, 465, 507
BlsI	GCNGC	3 cut(s)	448, 466, 508
BmgBI	CACGTC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	107, 213
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	111
Bpu14I	TTCGAA	2 cut(s)	43, 161
BsaHI	GRCGYC	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	106
BseGI	GGATG	4 cut(s)	268, 295, 351, 422
BseMII	CTCAG	2 cut(s)	80, 164
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	433, 493
BsgI	GTGCAG	2 cut(s)	309, 327
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	195, 215, 246
BsnI	GGCC	1 cut(s)	191
Bsp119I	TTCGAA	2 cut(s)	43, 161
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	112, 338, 434, 454
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	79, 165
BspLI	GGNNCC	2 cut(s)	107, 213
BspPI	GGATC	1 cut(s)	346
BspT104I	TTCGAA	2 cut(s)	43, 161
BspT107I	GGYRCC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	214
BssMI	GATC	4 cut(s)	112, 338, 434, 454
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	60, 273
BstACI	GRCGYC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	327
BstBI	TTCGAA	2 cut(s)	43, 161
BstC8I	GCNNGC	2 cut(s)	139, 422
BstDEI	CTNAG	2 cut(s)	66, 173
BstF5I	GGATG	4 cut(s)	268, 295, 351, 422
BstKTI	GATC	4 cut(s)	115, 341, 437, 457
BstMBI	GATC	4 cut(s)	112, 338, 434, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	433, 493
BsuRI	GGCC	1 cut(s)	191
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	4 cut(s)	268, 295, 351, 422
Cac8I	GCNNGC	2 cut(s)	139, 422
Cfr10I	RCCGGY	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	38, 328
CviAII	CATG	2 cut(s)	138, 398
CviQI	GTAC	2 cut(s)	38, 328
DdeI	CTNAG	2 cut(s)	66, 173
DpnI	GATC	4 cut(s)	114, 340, 436, 456
DpnII	GATC	4 cut(s)	112, 338, 434, 454
Eam1104I	CTCTTC	2 cut(s)	60, 273
EarI	CTCTTC	2 cut(s)	60, 273
Eco57I	CTGAAG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	117
FaeI	CATG	2 cut(s)	141, 401
FaiI	YATR	4 cut(s)	139, 399, 491, 504
FatI	CATG	2 cut(s)	137, 397
Fnu4HI	GCNGC	3 cut(s)	447, 465, 507
FokI	GGATG	4 cut(s)	275, 282, 358, 429
Fsp4HI	GCNGC	3 cut(s)	447, 465, 507
FspBI	CTAG	2 cut(s)	168, 242
GluI	GCNGC	3 cut(s)	447, 465, 507
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	195, 215, 246
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	141, 401
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	4 cut(s)	45, 70, 271, 514
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	3 cut(s)	195, 215, 246
Hpy166II	GTNNAC	2 cut(s)	15, 313
Hpy188I	TCNGA	6 cut(s)	69, 81, 132, 174, 204, 392
Hpy188III	TCNNGA	3 cut(s)	230, 268, 275
Hpy8I	GTNNAC	2 cut(s)	15, 313
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	4 cut(s)	60, 157, 309, 364
HpyCH4IV	ACGT	2 cut(s)	17, 206
HpyCH4V	TGCA	5 cut(s)	137, 141, 290, 308, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	2 cut(s)	66, 173
HpySE526I	ACGT	2 cut(s)	17, 206
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	141, 401
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	112, 338, 434, 454
Lsp1109I	GCAGC	2 cut(s)	433, 493
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	2 cut(s)	168, 242
MaeII	ACGT	2 cut(s)	17, 206
MalI	GATC	4 cut(s)	114, 340, 436, 456
MboI	GATC	4 cut(s)	112, 338, 434, 454
MboII	GAAGA	3 cut(s)	47, 230, 290
MluCI	AATT	3 cut(s)	117, 181, 405
MlyI	GAGTC	2 cut(s)	265, 508
MmeI	TCCRAC	3 cut(s)	227, 316, 394
MnlI	CCTC	4 cut(s)	75, 75, 170, 181
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	2 cut(s)	149, 312
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	3 cut(s)	195, 215, 246
MwoI	GCNNNNNNNGC	1 cut(s)	426
NdeII	GATC	4 cut(s)	112, 338, 434, 454
NlaIII	CATG	2 cut(s)	141, 401
NlaIV	GGNNCC	2 cut(s)	107, 213
NmeAIII	GCCGAG	1 cut(s)	405
NspI	RCATGY	1 cut(s)	141
NspV	TTCGAA	2 cut(s)	43, 161
PaeI	GCATGC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	45, 70
PkrI	GCNGC	3 cut(s)	448, 466, 508
PleI	GAGTC	2 cut(s)	265, 508
PpsI	GAGTC	2 cut(s)	265, 508
PspN4I	GGNNCC	2 cut(s)	107, 213
RsaI	GTAC	2 cut(s)	39, 329
RsaNI	GTAC	2 cut(s)	38, 328
SaqAI	TTAA	2 cut(s)	149, 312
SatI	GCNGC	3 cut(s)	447, 465, 507
Sau3AI	GATC	4 cut(s)	112, 338, 434, 454
SchI	GAGTC	2 cut(s)	265, 508
SetI	ASST	7 cut(s)	20, 86, 149, 209, 237, 426, 496
SfaNI	GCATC	1 cut(s)	407
SfuI	TTCGAA	2 cut(s)	43, 161
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	3 cut(s)	117, 181, 405
SsiI	CCGC	1 cut(s)	465
SspMI	CTAG	2 cut(s)	168, 242
TaiI	ACGT	2 cut(s)	20, 209
TaqI	TCGA	3 cut(s)	43, 115, 161
TasI	AATT	3 cut(s)	117, 181, 405
TatI	WGTACW	2 cut(s)	37, 327
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	2 cut(s)	45, 70
Tru1I	TTAA	2 cut(s)	149, 312
Tru9I	TTAA	2 cut(s)	149, 312
TseI	GCWGC	2 cut(s)	446, 506
TspDTI	ATGAA	1 cut(s)	417
XapI	RAATTY	2 cut(s)	117, 181
XceI	RCATGY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	2 cut(s)	168, 242
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.