Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Forward (+)

14816985 .. 14823086

Gene Structure 6102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG169600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCAGTGGAGTTACTTGGAGGAGCAGCATTTAGTCTGCTGTATGACGGGGTTAAGCAAGCGATTGGAAAGACTGGGACTTTCAAATACCTCCTCAGAGATATCAAATCCACGCTAGAGTCTTTGAACAAACTGCACTCCACAGCCATCCGACAAATTGGAGAGTATAACCTGGAATTGGGTCTCCTAAATGACGAAATTGAAGACCTCAGAGAACAAATGGAGGAAGGGGCGAAGCTTGTTTGCAAGTTGTCCAATTTTCGTATGTGGAACTACTGCTGCATCAATTGTTACACTGACCAACTGGTTGACTTGGATAGGTTTCTCAAAAGACTGTTAGAGAACCTCAAATTGCAGCAAACAAGGGATGTGAAAGAGATCTTGGATCTGCTGAGGAAATACCGCATTGAGCTTGATGAATTAAAGGGCATGTTGAAGATGTTACTACAGCAGAGACGAGGCGATGTGATGGAGACCTCGACTTCAACTGCAGGAAGTAGTACAGAGACCATGCCTCAGCAAAGTGAAGGGAACGGCGAGGAACAAGTTATGGTGCCAAGTAAAAGAAGACAAATATGCAGCAATGCAAACCCAAATAACAAAAGGCTCAAAAAGCAAGACCAAACAAAGGAAGGTGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

214

Amino Acids

24.57

Weight (kDa)

6.06

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	8 - 140	2.3e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	178, 628
AgsI	TTSAA	5 cut(s)	85, 127, 203, 436, 486
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	2 cut(s)	238, 412
AluI	AGCT	2 cut(s)	238, 412
Alw26I	GTCTC	4 cut(s)	188, 448, 467, 500
AlwI	GGATC	1 cut(s)	393
ApeKI	GCWGC	4 cut(s)	26, 279, 355, 579
BanI	GGYRCC	1 cut(s)	553
BbsI	GAAGAC	2 cut(s)	210, 574
BbvCI	CCTCAGC	2 cut(s)	392, 516
BbvI	GCAGC	4 cut(s)	38, 266, 367, 591
BccI	CCATC	2 cut(s)	155, 463
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	4 cut(s)	188, 448, 467, 500
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	446, 489
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	4 cut(s)	27, 280, 356, 580
BlsI	GCNGC	4 cut(s)	28, 281, 357, 581
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	2 cut(s)	210, 574
Bpu10I	CCTNAGC	2 cut(s)	392, 516
BsaI	GGTCTC	3 cut(s)	188, 467, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 628
Bse1I	ACTGG	2 cut(s)	79, 309
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	147, 373
BseLI	CCNNNNNNNGG	2 cut(s)	178, 628
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	4 cut(s)	109, 223, 383, 530
BseNI	ACTGG	2 cut(s)	79, 309
BseRI	GAGGAG	2 cut(s)	36, 83
BseXI	GCAGC	4 cut(s)	38, 266, 367, 591
BsgI	GTGCAG	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	178, 628
BsmAI	GTCTC	4 cut(s)	188, 448, 467, 500
BsmBI	CGTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	91
Bso31I	GGTCTC	3 cut(s)	188, 467, 500
Bsp143I	GATC	2 cut(s)	378, 385
BspACI	CCGC	1 cut(s)	403
BspCNI	CTCAG	4 cut(s)	108, 222, 384, 529
BspLI	GGNNCC	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	553
BspTNI	GGTCTC	3 cut(s)	188, 467, 500
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	79, 309
BssMI	GATC	2 cut(s)	378, 385
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	95, 209, 392, 516
BstF5I	GGATG	2 cut(s)	147, 373
BstKTI	GATC	2 cut(s)	381, 388
BstMAI	GTCTC	4 cut(s)	188, 448, 467, 500
BstMBI	GATC	2 cut(s)	378, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	2 cut(s)	446, 489
BstV1I	GCAGC	4 cut(s)	38, 266, 367, 591
BstV2I	GAAGAC	2 cut(s)	210, 574
BstX2I	RGATCY	2 cut(s)	378, 385
BstYI	RGATCY	2 cut(s)	378, 385
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	147, 373
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 294
Cac8I	GCNNGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	2 cut(s)	430, 511
CviJI	RGCY	4 cut(s)	146, 238, 412, 607
CviKI_1	RGCY	4 cut(s)	146, 238, 412, 607
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	4 cut(s)	95, 209, 392, 516
DpnI	GATC	2 cut(s)	380, 387
DpnII	GATC	2 cut(s)	378, 385
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco31I	GGTCTC	3 cut(s)	188, 467, 500
Eco32I	GATATC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	2 cut(s)	433, 514
FaiI	YATR	7 cut(s)	45, 168, 266, 431, 512, 551, 577
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	429, 510
Fnu4HI	GCNGC	4 cut(s)	27, 280, 356, 580
FokI	GGATG	2 cut(s)	134, 380
Fsp4HI	GCNGC	4 cut(s)	27, 280, 356, 580
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	4 cut(s)	27, 280, 356, 580
Hin1II	CATG	2 cut(s)	433, 514
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	98, 152, 212
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	3 cut(s)	221, 521, 626
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	7 cut(s)	136, 246, 282, 355, 491, 579, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpyF3I	CTNAG	4 cut(s)	95, 209, 392, 516
Hsp92II	CATG	2 cut(s)	433, 514
Kzo9I	GATC	2 cut(s)	378, 385
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	60, 158, 185, 290, 477
Lsp1109I	GCAGC	4 cut(s)	38, 266, 367, 591
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	12, 290, 441
MalI	GATC	2 cut(s)	380, 387
MboI	GATC	2 cut(s)	378, 385
MboII	GAAGA	3 cut(s)	215, 448, 579
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	2 cut(s)	378, 385
MluCI	AATT	7 cut(s)	156, 176, 198, 256, 286, 350, 419
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	175
MseI	TTAA	2 cut(s)	54, 422
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	613
NdeII	GATC	2 cut(s)	378, 385
NlaIII	CATG	2 cut(s)	433, 514
NlaIV	GGNNCC	1 cut(s)	555
NspI	RCATGY	1 cut(s)	433
PkrI	GCNGC	4 cut(s)	28, 281, 357, 581
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	378, 385
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	54, 422
SatI	GCNGC	4 cut(s)	27, 280, 356, 580
Sau3AI	GATC	2 cut(s)	378, 385
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	9 cut(s)	93, 174, 210, 240, 323, 348, 414, 479, 637
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	446, 489
Sse9I	AATT	7 cut(s)	156, 176, 198, 256, 286, 350, 419
SsiI	CCGC	1 cut(s)	403
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	479
TasI	AATT	7 cut(s)	156, 176, 198, 256, 286, 350, 419
TatI	WGTACW	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	54, 422
Tru9I	TTAA	2 cut(s)	54, 422
TscAI	CASTG	2 cut(s)	12, 301
TseI	GCWGC	4 cut(s)	26, 279, 355, 579
TspDTI	ATGAA	1 cut(s)	432
TspRI	CASTG	2 cut(s)	12, 301
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.