Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Forward (+)

38004807 .. 38005499

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTCTGGAGTTGATCGGAGGAGCAGTATTTGCAGTGCTGTATGATGGCGTTAAGCAAGCTATGGGTAGGACTGAGACGTTCAAAGAGCTCCTCAGAGATCTCAAGTTCACCTTGGAGTGTTTAAGACGGCAGGCCACGGCCATCCAACAGATAGGCCAGTATAACGTGGAATTGGGTCTCCCAAACGATGAGATAGAGGAACTTGAAAGACAAATGCACAGCGGAACACGACTTGTGGGGAAGTTGTTGACTTTTCGGTGGTGGAACTACTGCTGCATAAATTGTTACACCGACCAACTAGTTGACTTGGATAGGTCCCTAAGAAGACTGTTGGAAAACCTCATGTTGCAGGAGATAAGGGACGTGAAGGAGATATTGGATCTGTCGAGGAAAAGCCGCAAGGAGCTTGAAGAAGTGAAAGAGGCACAATTGAGTATGCACAAGATACTGCAGCAGATAGCAGGAGTAGTTGTAATGGAAGAGGCCTCAACTTCGGCTGCTGCAGGAGGAGGTGCTATTGAGATGGTGCCGAATCAAAATGAAGGGAATGGCGGCATTCAAGGTGAAATCATTGGAAATTGCTTTGTCCAATTTTATATTCGCTTAGCACATTTGGTATTTGTGCTTAAATTTCTGTTCATATTCTATGTTATTAGCTTCCGAAAGCCTAATGTAGCAGTGCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

230

Amino Acids

26.22

Weight (kDa)

5.75

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	8 - 137	6.3e-16	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AciI	CCGC	3 cut(s)	225, 400, 555
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	85, 209, 413, 563
AhlI	ACTAGT	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 585, 617
AluBI	AGCT	4 cut(s)	62, 91, 409, 660
AluI	AGCT	4 cut(s)	62, 91, 409, 660
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	71, 185
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	4 cut(s)	135, 141, 157, 486
ApeKI	GCWGC	4 cut(s)	276, 454, 500, 503
ApoI	RAATTY	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	103, 578
AvaII	GGWCC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	263, 466, 487, 490
BccI	CCATC	3 cut(s)	41, 152, 520
BceAI	ACGGC	2 cut(s)	146, 156
BcoDI	GTCTC	2 cut(s)	71, 185
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	2 cut(s)	452, 504
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	6 cut(s)	277, 400, 455, 501, 504, 556
BlpI	GCTNAGC	1 cut(s)	607
BlsI	GCNGC	6 cut(s)	278, 401, 456, 502, 505, 557
Bme18I	GGWCC	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	2 cut(s)	320, 531
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	607
BpuEI	CTTGAG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	114, 138
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 459, 489
Bse1I	ACTGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	114, 138
BseGI	GGATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	66, 109
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	3 cut(s)	36, 83, 525
BseXI	GCAGC	4 cut(s)	263, 466, 487, 490
BshFI	GGCC	4 cut(s)	137, 143, 159, 488
BshNI	GGYRCC	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	304, 377
BsmAI	GTCTC	2 cut(s)	71, 185
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	304, 377
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	4 cut(s)	137, 143, 159, 488
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	15, 100, 382
Bsp1720I	GCTNAGC	1 cut(s)	607
BspACI	CCGC	3 cut(s)	225, 400, 555
BspANI	GGCC	4 cut(s)	137, 143, 159, 488
BspCNI	CTCAG	2 cut(s)	67, 108
BspLI	GGNNCC	2 cut(s)	320, 531
BspMAI	CTGCAG	2 cut(s)	456, 508
BspPI	GGATC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	114, 138
BssMI	GATC	3 cut(s)	15, 100, 382
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	60, 135
BstDEI	CTNAG	4 cut(s)	75, 95, 323, 607
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	18, 103, 385
BstMAI	GTCTC	2 cut(s)	71, 185
BstMBI	GATC	3 cut(s)	15, 100, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstSFI	CTRYAG	2 cut(s)	452, 504
BstV1I	GCAGC	4 cut(s)	263, 466, 487, 490
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	100, 382
BstYI	RGATCY	2 cut(s)	100, 382
BsuRI	GGCC	4 cut(s)	137, 143, 159, 488
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	2 cut(s)	42, 687
BtsIMutI	CAGTG	2 cut(s)	42, 687
Cac8I	GCNNGC	2 cut(s)	60, 135
Cfr13I	GGNCC	1 cut(s)	318
CviAII	CATG	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	75, 95, 323, 607
DpnI	GATC	3 cut(s)	17, 102, 384
DpnII	GATC	3 cut(s)	15, 100, 382
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	318
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	1 cut(s)	349
FaiI	YATR	9 cut(s)	45, 65, 165, 281, 347, 440, 600, 644, 651
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	2 cut(s)	304, 377
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	6 cut(s)	277, 400, 455, 501, 504, 556
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	6 cut(s)	277, 400, 455, 501, 504, 556
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	6 cut(s)	277, 400, 455, 501, 504, 556
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	137, 143, 159, 488
Hin1II	CATG	1 cut(s)	349
HincII	GTYRAC	2 cut(s)	252, 307
HindII	GTYRAC	2 cut(s)	252, 307
HinfI	GANTC	1 cut(s)	535
HphI	GGTGA	2 cut(s)	103, 578
Hpy166II	GTNNAC	3 cut(s)	111, 252, 307
Hpy188I	TCNGA	3 cut(s)	20, 98, 665
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	3 cut(s)	111, 252, 307
HpyAV	CCTTC	2 cut(s)	364, 539
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	3 cut(s)	80, 168, 366
HpyCH4V	TGCA	7 cut(s)	35, 220, 279, 352, 442, 454, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	4 cut(s)	75, 95, 323, 607
HpySE526I	ACGT	3 cut(s)	80, 168, 366
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	15, 100, 382
LmnI	GCTCC	3 cut(s)	23, 96, 406
LpnPI	CCDG	5 cut(s)	119, 173, 338, 450, 492
Lsp1109I	GCAGC	4 cut(s)	263, 466, 487, 490
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	3 cut(s)	80, 168, 366
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	17, 102, 384
MboI	GATC	3 cut(s)	15, 100, 382
MboII	GAAGA	3 cut(s)	339, 425, 494
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	2 cut(s)	100, 382
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	6 cut(s)	173, 283, 431, 580, 593, 632
MmeI	TCCRAC	2 cut(s)	172, 315
MseI	TTAA	3 cut(s)	54, 125, 630
MspA1I	CMGCKG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	15, 100, 382
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	320, 531
PceI	AGGCCT	1 cut(s)	488
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	6 cut(s)	278, 401, 456, 502, 505, 557
PpuMI	RGGWCCY	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	320, 531
PspPI	GGNCC	1 cut(s)	318
PspPPI	RGGWCCY	1 cut(s)	318
PstI	CTGCAG	2 cut(s)	456, 508
PsuI	RGATCY	2 cut(s)	100, 382
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	54, 125, 630
SatI	GCNGC	6 cut(s)	277, 400, 455, 501, 504, 556
Sau3AI	GATC	3 cut(s)	15, 100, 382
Sau96I	GGNCC	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	93
SfcI	CTRYAG	2 cut(s)	452, 504
SinI	GGWCC	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	301
Sse9I	AATT	6 cut(s)	173, 283, 431, 580, 593, 632
SseBI	AGGCCT	1 cut(s)	488
SsiI	CCGC	3 cut(s)	225, 400, 555
SspMI	CTAG	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	3 cut(s)	83, 171, 369
TaqI	TCGA	1 cut(s)	389
TasI	AATT	6 cut(s)	173, 283, 431, 580, 593, 632
TauI	GCSGC	2 cut(s)	402, 558
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	3 cut(s)	54, 125, 630
Tru9I	TTAA	3 cut(s)	54, 125, 630
TscAI	CASTG	2 cut(s)	42, 687
TseI	GCWGC	4 cut(s)	276, 454, 500, 503
TspDTI	ATGAA	2 cut(s)	558, 631
TspRI	CASTG	2 cut(s)	42, 687
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	632
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.