Rmu_sc0005784.1_g000013
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005784.1
Physical Location & Seq
Reverse (-)
60578 .. 62515
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005784.1_g000013.1.cds

Sequence Viewer

Length: 1095 bp
atgattatggcagtggcatcattagatggagggacagggactgctctaggagcaatatttgggatgctacttgaactcgttatagaagtgaaggacaagaatgcgacgtttaagcctctgctccaagatctcaaatccactttagaatccttaaaaccgtttgtcgaggagatggcacagcataacaaggtattggatctcccaaaggaggaactcaaaagatttgcagtggaaatggagaatggagtaaagctcgtttgcaagtgctctaaggttcgtttgtgggcaagctacaaaaagtacgaatacaccaacaaacttcttggattggatgagttttgccggagacaggcaagtctactgagagagcaggtagcaagggatgtaagggagacgtcggcttccattaggaatgtgaaggaagagatgttggttttgataagtaatacagagatggtgatcaagcgaatgaaatttagcactggtgttgcacaaaaatcctttgataaggctcgatcgtcaatccctagatgctatgaaatagttgctgatgatcaaaggcgtaaaaatcttgggtttattaagcgacgtatccgacccatagcgggaggagctcccttcataacttgttataaatgctcataccccctgcagatacctgcaggttttcacctttctaggagatggcagaaactcagatgtggtgcttgttcggcggttcttaagttttcactcataatgaaatctcatgttgtaccatatgaagtacggagtgccaaagagcctccaacagctgaggatgacagaaacctggtttcaacatctaaacaatttgatagtcaacatgcggatcccgatacatattctgatgatttcgttgatagactcttacactacaaaagcacctctacccaagtatatactggaacaccctctgattctatccaatgcgtttccgaaacatcgaaaatctggaccaccgatttagaaagcagagatgaaagtatggaaccgtcgtgtgaagggctcggcagcatggcagcagcaagtcggcagcctgccgacagcctgtcgacagcattagctgttgcatga

Protein Analysis

364

Amino Acids

40.81

Weight (kDa)

8.78

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AasI GACNNNNNNGTC 1 cut(s) 354
AatII GACGTC 1 cut(s) 398
Acc36I ACCTGC 3 cut(s) 361, 653, 667
AccI GTMKAC 2 cut(s) 358, 1073
AciI CCGC 3 cut(s) 605, 716, 848
AclWI GGATC 3 cut(s) 204, 845, 858
AcsI RAATTY 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 3 cut(s) 302, 756, 768
AfiI CCNNNNNNNGG 3 cut(s) 208, 349, 605
AflII CTTAAG 1 cut(s) 722
AgsI TTSAA 2 cut(s) 74, 819
AhdI GACNNNNNGTC 1 cut(s) 1069
AjnI CCWGG 1 cut(s) 810
AluBI AGCT 5 cut(s) 253, 291, 614, 794, 1085
AluI AGCT 5 cut(s) 253, 291, 614, 794, 1085
Alw21I GWGCWC 2 cut(s) 269, 616
Alw26I GTCTC 2 cut(s) 340, 386
AlwI GGATC 3 cut(s) 204, 845, 858
AlwNI CAGNNNCTG 1 cut(s) 41
ApeKI GCWGC 4 cut(s) 1032, 1040, 1043, 1054
ApoI RAATTY 1 cut(s) 473
AspS9I GGNCC 1 cut(s) 975
AsuHPI GGTGA 2 cut(s) 469, 662
AvaII GGWCC 1 cut(s) 975
BamHI GGATCC 1 cut(s) 850
BanII GRGCYC 2 cut(s) 616, 1029
Bbv12I GWGCWC 2 cut(s) 269, 616
BbvCI CCTCAGC 1 cut(s) 795
BbvI GCAGC 4 cut(s) 1044, 1052, 1055, 1066
BccI CCATC 4 cut(s) 20, 166, 448, 678
BciT130I CCWGG 1 cut(s) 812
BciVI GTATCC 1 cut(s) 602
BclI TGATCA 2 cut(s) 459, 553
BcoDI GTCTC 2 cut(s) 340, 386
BfaI CTAG 3 cut(s) 47, 528, 678
BfmI CTRYAG 2 cut(s) 650, 660
BfrI CTTAAG 1 cut(s) 722
BfuAI ACCTGC 3 cut(s) 361, 653, 667
BfuI GTATCC 1 cut(s) 602
BglII AGATCT 1 cut(s) 127
BisI GCNGC 4 cut(s) 1033, 1041, 1044, 1055
BlsI GCNGC 4 cut(s) 1034, 1042, 1045, 1056
Bme1390I CCNGG 1 cut(s) 812
Bme18I GGWCC 1 cut(s) 975
BmeRI GACNNNNNGTC 1 cut(s) 1069
BmgT120I GGNCC 1 cut(s) 975
BmiI GGNNCC 2 cut(s) 852, 1011
BmrFI CCNGG 1 cut(s) 812
BmsI GCATC 3 cut(s) 26, 54, 521
BplI GAGNNNNNCTC 2 cut(s) 237, 269
Bpu10I CCTNAGC 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 349, 605
Bse1I ACTGG 2 cut(s) 487, 928
Bse8I GATNNNNATC 1 cut(s) 458
BseBI CCWGG 1 cut(s) 812
BseGI GGATG 4 cut(s) 69, 337, 388, 805
BseJI GATNNNNATC 1 cut(s) 458
BseLI CCNNNNNNNGG 3 cut(s) 208, 349, 605
BseMII CTCAG 3 cut(s) 353, 709, 786
BseNI ACTGG 2 cut(s) 487, 928
BseRI GAGGAG 2 cut(s) 182, 624
BseXI GCAGC 4 cut(s) 1044, 1052, 1055, 1066
Bsh1285I CGRYCG 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 2 cut(s) 269, 616
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 2 cut(s) 46, 52
BslI CCNNNNNNNGG 3 cut(s) 208, 349, 605
BsmAI GTCTC 2 cut(s) 340, 386
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 46, 52
BsmI GAATGC 1 cut(s) 106
Bsp1286I GDGCHC 3 cut(s) 269, 616, 1029
Bsp143I GATC 6 cut(s) 127, 196, 459, 515, 553, 850
BspACI CCGC 3 cut(s) 605, 716, 848
BspCNI CTCAG 3 cut(s) 354, 708, 787
BspLI GGNNCC 2 cut(s) 852, 1011
BspMAI CTGCAG 2 cut(s) 654, 664
BspMI ACCTGC 3 cut(s) 361, 653, 667
BspPI GGATC 3 cut(s) 204, 845, 858
BspTI CTTAAG 1 cut(s) 722
BsrI ACTGG 2 cut(s) 487, 928
BssMI GATC 6 cut(s) 127, 196, 459, 515, 553, 850
BssNI GRCGYC 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 812
Bst4CI ACNGT 2 cut(s) 159, 1014
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 395
BstAFI CTTAAG 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 289, 1059
BstDEI CTNAG 4 cut(s) 270, 362, 695, 795
BstF5I GGATG 4 cut(s) 69, 337, 388, 805
BstKTI GATC 6 cut(s) 130, 199, 462, 518, 556, 853
BstMAI GTCTC 2 cut(s) 340, 386
BstMBI GATC 6 cut(s) 127, 196, 459, 515, 553, 850
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 3 cut(s) 50, 611, 713
BstNI CCWGG 1 cut(s) 812
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 1 cut(s) 810
BstSFI CTRYAG 2 cut(s) 650, 660
BstV1I GCAGC 4 cut(s) 1044, 1052, 1055, 1066
BstX2I RGATCY 3 cut(s) 127, 196, 850
BstYI RGATCY 3 cut(s) 127, 196, 850
BsuI GTATCC 1 cut(s) 602
BtsCI GGATG 4 cut(s) 69, 337, 388, 805
BtsI GCAGTG 2 cut(s) 18, 234
BtsIMutI CAGTG 3 cut(s) 18, 234, 480
BveI ACCTGC 3 cut(s) 361, 653, 667
Cac8I GCNNGC 2 cut(s) 289, 1059
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 975
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 3 cut(s) 301, 755, 767
CviAII CATG 4 cut(s) 749, 845, 1036, 1092
CviQI GTAC 3 cut(s) 301, 755, 767
DdeI CTNAG 4 cut(s) 270, 362, 695, 795
DpnI GATC 6 cut(s) 129, 198, 461, 517, 555, 852
DpnII GATC 6 cut(s) 127, 196, 459, 515, 553, 850
DrdI GACNNNNNNGTC 1 cut(s) 354
DriI GACNNNNNGTC 1 cut(s) 1069
DseDI GACNNNNNNGTC 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 417
Eam1105I GACNNNNNGTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 417
Ecl136II GAGCTC 1 cut(s) 614
Eco24I GRGCYC 2 cut(s) 616, 1029
Eco47I GGWCC 1 cut(s) 975
Eco53kI GAGCTC 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 810
EcoT38I GRGCYC 2 cut(s) 616, 1029
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 4 cut(s) 752, 848, 1039, 1095
FaqI GGGAC 2 cut(s) 46, 52
FatI CATG 4 cut(s) 748, 844, 1035, 1091
FauI CCCGC 1 cut(s) 598
FauNDI CATATG 1 cut(s) 760
FbaI TGATCA 2 cut(s) 459, 553
FblI GTMKAC 2 cut(s) 358, 1073
Fnu4HI GCNGC 4 cut(s) 1033, 1041, 1044, 1055
FokI GGATG 4 cut(s) 76, 344, 395, 812
FriOI GRGCYC 2 cut(s) 616, 1029
Fsp4HI GCNGC 4 cut(s) 1033, 1041, 1044, 1055
FspBI CTAG 3 cut(s) 47, 528, 678
GluI GCNGC 4 cut(s) 1033, 1041, 1044, 1055
HapII CCGG 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 4 cut(s) 752, 848, 1039, 1095
HincII GTYRAC 2 cut(s) 842, 1074
HindII GTYRAC 2 cut(s) 842, 1074
HinfI GANTC 3 cut(s) 146, 885, 938
HpaII CCGG 1 cut(s) 343
HphI GGTGA 2 cut(s) 469, 662
Hpy166II GTNNAC 3 cut(s) 359, 842, 1074
Hpy188I TCNGA 5 cut(s) 596, 698, 868, 937, 958
Hpy188III TCNNGA 2 cut(s) 854, 973
Hpy8I GTNNAC 3 cut(s) 359, 842, 1074
Hpy99I CGWCG 4 cut(s) 109, 400, 591, 1018
HpyAV CCTTC 4 cut(s) 85, 412, 628, 1016
HpyCH4III ACNGT 2 cut(s) 159, 1014
HpyCH4IV ACGT 3 cut(s) 107, 395, 589
HpyCH4V TGCA 6 cut(s) 227, 261, 491, 652, 662, 1091
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 611, 713
HpyF3I CTNAG 4 cut(s) 270, 362, 695, 795
HpySE526I ACGT 3 cut(s) 107, 395, 589
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 4 cut(s) 752, 848, 1039, 1095
Ksp22I TGATCA 2 cut(s) 459, 553
Kzo9I GATC 6 cut(s) 127, 196, 459, 515, 553, 850
LmnI GCTCC 4 cut(s) 50, 126, 611, 619
Lsp1109I GCAGC 4 cut(s) 1044, 1052, 1055, 1066
LweI GCATC 3 cut(s) 26, 54, 521
MabI ACCWGGT 1 cut(s) 810
MaeI CTAG 3 cut(s) 47, 528, 678
MaeII ACGT 3 cut(s) 107, 395, 589
MalI GATC 6 cut(s) 129, 198, 461, 517, 555, 852
MboI GATC 6 cut(s) 127, 196, 459, 515, 553, 850
MboII GAAGA 1 cut(s) 434
MflI RGATCY 3 cut(s) 127, 196, 850
MhlI GDGCHC 3 cut(s) 269, 616, 1029
MluCI AATT 2 cut(s) 473, 830
MlyI GAGTC 1 cut(s) 879
MmeI TCCRAC 2 cut(s) 619, 812
MnlI CCTC 9 cut(s) 23, 126, 160, 202, 602, 790, 795, 916, 943
MseI TTAA 4 cut(s) 111, 152, 582, 723
MspA1I CMGCKG 1 cut(s) 794
MspCI CTTAAG 1 cut(s) 722
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 812
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 812
MwoI GCNNNNNNNGC 3 cut(s) 50, 611, 713
NdeI CATATG 1 cut(s) 760
NdeII GATC 6 cut(s) 127, 196, 459, 515, 553, 850
NlaIII CATG 4 cut(s) 752, 848, 1039, 1095
NlaIV GGNNCC 2 cut(s) 852, 1011
NmeAIII GCCGAG 1 cut(s) 1008
NspI RCATGY 1 cut(s) 848
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 2 cut(s) 146, 938
PkrI GCNGC 4 cut(s) 1034, 1042, 1045, 1056
Ple19I CGATCG 1 cut(s) 518
PleI GAGTC 1 cut(s) 879
PpsI GAGTC 1 cut(s) 879
PsiI TTATAA 1 cut(s) 633
Psp124BI GAGCTC 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 810
PspGI CCWGG 1 cut(s) 810
PspN4I GGNNCC 2 cut(s) 852, 1011
PspPI GGNCC 1 cut(s) 975
PstI CTGCAG 2 cut(s) 654, 664
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 3 cut(s) 127, 196, 850
PvuI CGATCG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 794
RsaI GTAC 3 cut(s) 302, 756, 768
RsaNI GTAC 3 cut(s) 301, 755, 767
SacI GAGCTC 1 cut(s) 616
SalI GTCGAC 1 cut(s) 1072
SaqAI TTAA 4 cut(s) 111, 152, 582, 723
SatI GCNGC 4 cut(s) 1033, 1041, 1044, 1055
Sau3AI GATC 6 cut(s) 127, 196, 459, 515, 553, 850
Sau96I GGNCC 1 cut(s) 975
SbfI CCTGCAGG 1 cut(s) 664
SchI GAGTC 1 cut(s) 879
ScrFI CCNGG 1 cut(s) 812
SdaI CCTGCAGG 1 cut(s) 664
SduI GDGCHC 3 cut(s) 269, 616, 1029
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 3 cut(s) 26, 54, 521
SfcI CTRYAG 2 cut(s) 650, 660
SinI GGWCC 1 cut(s) 975
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
Sse8387I CCTGCAGG 1 cut(s) 664
Sse9I AATT 2 cut(s) 473, 830
SsiI CCGC 3 cut(s) 605, 716, 848
SspI AATATT 1 cut(s) 57
SspMI CTAG 3 cut(s) 47, 528, 678
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 1 cut(s) 810
TaaI ACNGT 2 cut(s) 159, 1014
TaiI ACGT 3 cut(s) 110, 398, 592
TaqI TCGA 4 cut(s) 165, 514, 965, 1073
TasI AATT 2 cut(s) 473, 830
TfiI GAWTC 2 cut(s) 146, 938
Tru1I TTAA 4 cut(s) 111, 152, 582, 723
Tru9I TTAA 4 cut(s) 111, 152, 582, 723
TscAI CASTG 3 cut(s) 18, 234, 487
TseI GCWGC 4 cut(s) 1032, 1040, 1043, 1054
TspDTI ATGAA 6 cut(s) 485, 552, 610, 755, 777, 1014
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 3 cut(s) 18, 234, 487
Vha464I CTTAAG 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 975
XapI RAATTY 1 cut(s) 473
XceI RCATGY 1 cut(s) 848
XcmI CCANNNNNNNNNTGG 1 cut(s) 920
XmiI GTMKAC 2 cut(s) 358, 1073
XspI CTAG 3 cut(s) 47, 528, 678
ZraI GACGTC 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.