Rorug02G0120800
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
10344400 .. 10346625
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0120800.1

Sequence Viewer

Length: 1092 bp
ATGGCTTTTCTCTCCCCAAAAATTCTTCCTTCATCTTCATCTTCATCTGTCAGAGTTTCTGTGATTATCTTATTTATATTGCTCTCCCATAATGTTGCTGCTATAACACTACCCAAAAATGGAACAACTCCAGCGGTGTTTGCTTTTGGAGATTCAATATTGGATACTGGCAATAACGATTACATCATTTCTATGACCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTATGGGAGGAATGCCTACAGGAAGGTTTAGCAATGGAAGAGTCCCCTCAGACTTCGTTGCTGAAGAATTAGGAGTGAAGAAGATGTTGCCGGCTTATCTGGATCCGAATTTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGGAGGTTCAGGATTTGACCCTCTCACTCCCAAATTACAGTCTGGGTTTTCATTATCAGATCAATTAGACTTCTTCAAAGAATACAAAAGGAGGATAACTACCGCAGTTGGGGAGGAAAGAACAGCCACTATAATATCAAAAAGTGTATACGTTGTCTCCGTTGGAAGCAATGACATTGCAAATACTTATTTCTCTACACCACTGAGGAGCTCTCACTATGACATTCCAGCTTATACAGATCTCCTGCTCGAATCAGCAATAAATTTTGTTCAGGAACTTTATGCACTGGGAGCAAGAGTCATTGGAGTATTCAATTTTCCACCACTTGGGTGCTTGCCATCACAGAGAACACTGCATGGAGGCATAGTGAGGGCGTGCTACGAGGCCGAGAACCAAGCAGCAATCCTCTTCAACTCTAAGCTCTCCCCCCAAATAGATTCCCTCAATAAGAGACTTCCAGAAGCAGATGTCATTTACCTTGATATCTATACCCCTTTGCTTTCCGTGATCCAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGATATATTGAGGCTGGTCCTTCGTGTAACAAAGACTCCCCAGGTACTTGCAGTGACCCGTCAAAGTACCTATTCTGGGATGCTTACCATCCCACGGAGACAGGATACAGGTTCCTCACCTCTATGATTTCCGAACAATCATTATAA

Protein Analysis

363

Amino Acids

39.55

Weight (kDa)

5.18

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 46 - 354 2e-35 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1090
AccB7I CCANNNNNTGG 2 cut(s) 218, 707
AccI GTMKAC 1 cut(s) 528
AciI CCGC 2 cut(s) 134, 483
AclWI GGATC 3 cut(s) 326, 339, 883
AcsI RAATTY 3 cut(s) 21, 337, 643
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 991, 1013
AfiI CCNNNNNNNGG 6 cut(s) 119, 218, 489, 707, 1021, 1039
AgsI TTSAA 6 cut(s) 156, 350, 457, 694, 793, 917
AjnI CCWGG 1 cut(s) 985
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AleI CACNNNNGTG 1 cut(s) 709
AluBI AGCT 4 cut(s) 346, 591, 611, 802
AluI AGCT 4 cut(s) 346, 591, 611, 802
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 4 cut(s) 219, 541, 826, 1037
AlwI GGATC 3 cut(s) 326, 339, 883
AoxI GGCC 1 cut(s) 765
ApeKI GCWGC 3 cut(s) 98, 343, 779
ApoI RAATTY 3 cut(s) 21, 337, 643
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 1 cut(s) 1054
AvaII GGWCC 1 cut(s) 962
AxyI CCTNAGG 1 cut(s) 379
BamHI GGATCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 593
Bbv12I GWGCWC 1 cut(s) 593
BbvI GCAGC 3 cut(s) 85, 355, 791
BccI CCATC 2 cut(s) 727, 1041
BciT130I CCWGG 1 cut(s) 987
BciVI GTATCC 2 cut(s) 157, 1043
BcoDI GTCTC 4 cut(s) 219, 541, 826, 1037
BfmI CTRYAG 1 cut(s) 246
BfuI GTATCC 2 cut(s) 157, 1043
BglII AGATCT 1 cut(s) 619
BisI GCNGC 3 cut(s) 99, 344, 780
BlsI GCNGC 3 cut(s) 100, 345, 781
Bme1390I CCNGG 1 cut(s) 987
Bme18I GGWCC 1 cut(s) 962
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 2 cut(s) 333, 1058
BmrFI CCNGG 1 cut(s) 987
BmrI ACTGGG 1 cut(s) 677
BmsI GCATC 2 cut(s) 923, 1015
BmuI ACTGGG 1 cut(s) 677
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpmI CTGGAG 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 985, 1038
BsaXI ACNNNNNCTCC 8 cut(s) 521, 551, 663, 693, 732, 762, 965, 995
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 218, 489, 707, 1021, 1039
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 3 cut(s) 172, 367, 672
Bse21I CCTNAGG 1 cut(s) 379
Bse3DI GCAATG 3 cut(s) 268, 555, 556
BseBI CCWGG 1 cut(s) 987
BseDI CCNNGG 2 cut(s) 985, 1038
BseGI GGATG 3 cut(s) 938, 1030, 1033
BseLI CCNNNNNNNGG 6 cut(s) 119, 218, 489, 707, 1021, 1039
BseMI GCAATG 3 cut(s) 268, 555, 556
BseMII CTCAG 3 cut(s) 291, 393, 575
BseNI ACTGG 3 cut(s) 172, 367, 672
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 3 cut(s) 85, 355, 791
BshFI GGCC 1 cut(s) 767
BsiHKAI GWGCWC 1 cut(s) 593
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 6 cut(s) 119, 218, 489, 707, 1021, 1039
BsmAI GTCTC 4 cut(s) 219, 541, 826, 1037
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 767
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 4 cut(s) 331, 439, 619, 888
BspACI CCGC 2 cut(s) 134, 483
BspANI GGCC 1 cut(s) 767
BspCNI CTCAG 3 cut(s) 290, 392, 576
BspLI GGNNCC 2 cut(s) 333, 1058
BspPI GGATC 3 cut(s) 326, 339, 883
BsrDI GCAATG 3 cut(s) 268, 555, 556
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 3 cut(s) 172, 367, 672
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 985, 1038
BssMI GATC 4 cut(s) 331, 439, 619, 888
BssNAI GTATAC 1 cut(s) 529
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 1 cut(s) 420
Bst6I CTCTTC 2 cut(s) 262, 794
BstC8I GCNNGC 3 cut(s) 321, 716, 757
BstDEI CTNAG 4 cut(s) 277, 379, 584, 798
BstDSI CCRYGG 1 cut(s) 1038
BstF5I GGATG 3 cut(s) 938, 1030, 1033
BstKTI GATC 4 cut(s) 334, 442, 622, 891
BstMAI GTCTC 4 cut(s) 219, 541, 826, 1037
BstMBI GATC 4 cut(s) 331, 439, 619, 888
BstMWI GCNNNNNNNGC 2 cut(s) 140, 671
BstNI CCWGG 1 cut(s) 987
BstSCI CCNGG 1 cut(s) 985
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 85, 355, 791
BstX2I RGATCY 2 cut(s) 331, 619
BstYI RGATCY 2 cut(s) 331, 619
BstZ17I GTATAC 1 cut(s) 529
Bsu36I CCTNAGG 1 cut(s) 379
BsuI GTATCC 2 cut(s) 157, 1043
BsuRI GGCC 1 cut(s) 767
BtgI CCRYGG 1 cut(s) 1038
BtsCI GGATG 3 cut(s) 938, 1030, 1033
BtsI GCAGTG 2 cut(s) 731, 1003
BtsIMutI CAGTG 4 cut(s) 581, 665, 731, 1003
Cac8I GCNNGC 3 cut(s) 321, 716, 757
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 962
Csp6I GTAC 2 cut(s) 990, 1012
CviAII CATG 1 cut(s) 737
CviJI RGCY 9 cut(s) 5, 323, 346, 506, 591, 611, 767, 802, 959
CviKI_1 RGCY 9 cut(s) 5, 323, 346, 506, 591, 611, 767, 802, 959
CviQI GTAC 2 cut(s) 990, 1012
DdeI CTNAG 4 cut(s) 277, 379, 584, 798
DpnI GATC 4 cut(s) 333, 441, 621, 890
DpnII GATC 4 cut(s) 331, 439, 619, 888
Eam1104I CTCTTC 2 cut(s) 262, 794
EarI CTCTTC 2 cut(s) 262, 794
Ecl136II GAGCTC 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 593
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 1 cut(s) 962
Eco53kI GAGCTC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 985
EcoRV GATATC 1 cut(s) 865
EcoT38I GRGCYC 1 cut(s) 593
FaeI CATG 1 cut(s) 740
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 1 cut(s) 257
FatI CATG 1 cut(s) 736
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 99, 344, 780
FokI GGATG 3 cut(s) 945, 1020, 1037
FriOI GRGCYC 1 cut(s) 593
Fsp4HI GCNGC 3 cut(s) 99, 344, 780
GluI GCNGC 3 cut(s) 99, 344, 780
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 767
HapII CCGG 1 cut(s) 320
Hin1II CATG 1 cut(s) 740
HinfI GANTC 6 cut(s) 152, 270, 632, 678, 818, 980
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 1054
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 5 cut(s) 53, 280, 336, 439, 1078
Hpy188III TCNNGA 6 cut(s) 329, 350, 381, 390, 653, 839
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 3 cut(s) 39, 246, 975
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 5 cut(s) 343, 560, 665, 736, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 671
HpyF3I CTNAG 4 cut(s) 277, 379, 584, 798
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 1 cut(s) 740
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Kzo9I GATC 4 cut(s) 331, 439, 619, 888
LmnI GCTCC 2 cut(s) 588, 671
Lsp1109I GCAGC 3 cut(s) 85, 355, 791
LweI GCATC 2 cut(s) 923, 1015
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 2 cut(s) 971, 998
MalI GATC 4 cut(s) 333, 441, 621, 890
MboI GATC 4 cut(s) 331, 439, 619, 888
MboII GAAGA 9 cut(s) 17, 27, 33, 279, 305, 319, 322, 445, 781
MflI RGATCY 2 cut(s) 331, 619
MhlI GDGCHC 1 cut(s) 593
MluCI AATT 8 cut(s) 21, 205, 296, 337, 413, 443, 643, 694
MlyI GAGTC 3 cut(s) 279, 687, 974
MmeI TCCRAC 1 cut(s) 523
MroNI GCCGGC 1 cut(s) 319
MslI CAYNNNNRTG 3 cut(s) 191, 709, 1067
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 987
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 1 cut(s) 987
MwoI GCNNNNNNNGC 2 cut(s) 140, 671
NaeI GCCGGC 1 cut(s) 321
NdeII GATC 4 cut(s) 331, 439, 619, 888
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 740
NlaIV GGNNCC 2 cut(s) 333, 1058
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 1 cut(s) 998
OliI CACNNNNGTG 1 cut(s) 709
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 152, 632, 818
PflMI CCANNNNNTGG 2 cut(s) 218, 707
PkrI GCNGC 3 cut(s) 100, 345, 781
PleI GAGTC 3 cut(s) 278, 686, 974
PpsI GAGTC 3 cut(s) 278, 686, 974
PsiI TTATAA 1 cut(s) 1090
Psp124BI GAGCTC 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 985
PspGI CCWGG 1 cut(s) 985
PspN4I GGNNCC 2 cut(s) 333, 1058
PspPI GGNCC 1 cut(s) 962
PsuI RGATCY 2 cut(s) 331, 619
RsaI GTAC 2 cut(s) 991, 1013
RsaNI GTAC 2 cut(s) 990, 1012
RseI CAYNNNNRTG 3 cut(s) 191, 709, 1067
SacI GAGCTC 1 cut(s) 593
SatI GCNGC 3 cut(s) 99, 344, 780
Sau3AI GATC 4 cut(s) 331, 439, 619, 888
Sau96I GGNCC 1 cut(s) 962
SchI GAGTC 3 cut(s) 279, 687, 974
ScrFI CCNGG 1 cut(s) 987
SduI GDGCHC 1 cut(s) 593
SfaNI GCATC 2 cut(s) 923, 1015
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 962
SmiMI CAYNNNNRTG 3 cut(s) 191, 709, 1067
Sse9I AATT 8 cut(s) 21, 205, 296, 337, 413, 443, 643, 694
SsiI CCGC 2 cut(s) 134, 483
SspI AATATT 1 cut(s) 159
SstI GAGCTC 1 cut(s) 593
StyD4I CCNGG 1 cut(s) 985
TaaI ACNGT 1 cut(s) 420
TaiI ACGT 1 cut(s) 534
TaqI TCGA 1 cut(s) 630
TasI AATT 8 cut(s) 21, 205, 296, 337, 413, 443, 643, 694
TfiI GAWTC 3 cut(s) 152, 632, 818
TscAI CASTG 4 cut(s) 588, 672, 738, 1003
TseFI GTSAC 1 cut(s) 998
TseI GCWGC 3 cut(s) 98, 343, 779
Tsp45I GTSAC 1 cut(s) 998
TspDTI ATGAA 4 cut(s) 21, 27, 33, 420
TspGWI ACGGA 3 cut(s) 529, 874, 1055
TspRI CASTG 4 cut(s) 588, 672, 738, 1003
Van91I CCANNNNNTGG 2 cut(s) 218, 707
VpaK11BI GGWCC 1 cut(s) 962
XapI RAATTY 3 cut(s) 21, 337, 643
XmiI GTMKAC 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.