Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Reverse (-)

6364847 .. 6365940

Gene Structure 1094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTATCTCCTGCCAAATGAGGAGACCCGAAATCTCGAGCGGCAAATGGAGGAGGGAGTGAAGCTAGTTGGCCAGCTATCGAGTCTTGGCATGTGGAACTATCACTGCATGAAGCGAAGCTACTCCGACCAACTTGCCGAATTGTTCAGGTCTCTTAGAAGAGTGTTGTACATTCTAAAGCTGCAGGAAGAGAGACATACGAATGAGCTCTTGCTTGTTGCAAGGAACATTCGCGACAGACAAAATGACCTGGAAAGAAGGTTATGTGGTTTACTAAAAGTGAAGCTGGAGGAGCAGAACGAAGGCAATGGTCAGGTGAGAAATGGAGGAGGAGGGGCTGGTCAGGATCTGGAGCAAGTGTTTTGCCGTTTGCTTGAACTCTTGGTTTGGGAAGTTGATGTAGAATTGAATGGCAAAAGGAGCTTCAAACCGGTCTTGGTTGATCTCAAATCCACGGCTAGTTCCTTCCAACCACTCATACAAGAGATATCACAGCTTAACAACATACTGCATCTATCAAAGGAGGAACTGGAAAATCTGAGGGAACAATTGCAGAAAGGTATCGAGCTTGTTGACAAGTGCTCGAAGGTACCTCGAGGGGAGAGCTACAAAAGGTATGAATACTTCGAAAGACTTCTGGAGTTGGATGATTATCTTCGAGGATTGTTATGTATGATGAGGGAGCAGGTAGCCAAGGATATGAAGGAGACTTTGCTTTCTGTATGCAATTTGGAAATGATGCTCACTCGAATTGAAGAGCTACATCTGGCACAAAATCAAATTGATCAACACCCTGCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

31.26

Weight (kDa)

5.59

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	136 - 247	1.6e-17	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	676
Acc65I	GGTACC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	40
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	70
AfaI	GTAC	2 cut(s)	170, 591
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	377, 409, 427, 755
AjnI	CCWGG	1 cut(s)	249
Alw21I	GWGCWC	2 cut(s)	210, 584
Alw26I	GTCTC	4 cut(s)	17, 156, 187, 701
AlwI	GGATC	1 cut(s)	354
AlwNI	CAGNNNCTG	1 cut(s)	349
Ama87I	CYCGRG	2 cut(s)	35, 594
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	181
AsiGI	ACCGGT	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	633
Asp718I	GGTACC	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	627
AvaI	CYCGRG	2 cut(s)	35, 594
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	4 cut(s)	104, 136, 608, 640
Bbv12I	GWGCWC	2 cut(s)	210, 584
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	2 cut(s)	351, 471
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	4 cut(s)	17, 156, 187, 701
BfaI	CTAG	2 cut(s)	65, 459
BfmI	CTRYAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	2 cut(s)	41, 182
BlsI	GCNGC	2 cut(s)	42, 183
Bme1390I	CCNGG	1 cut(s)	251
BmeT110I	CYCGRG	2 cut(s)	35, 594
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	520, 729
BpmI	CTGGAG	3 cut(s)	308, 371, 659
Bpu14I	TTCGAA	1 cut(s)	627
BsaBI	GATNNNNATC	1 cut(s)	651
BsaI	GGTCTC	2 cut(s)	17, 156
BsaJI	CCNNGG	2 cut(s)	453, 693
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	453, 693
BseGI	GGATG	1 cut(s)	652
BseJI	GATNNNNATC	1 cut(s)	651
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	5 cut(s)	35, 65, 305, 342, 345
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	589
BshTI	ACCGGT	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	210, 584
BsiHKCI	CYCGRG	2 cut(s)	35, 594
BsiSI	CCGG	1 cut(s)	431
BsmAI	GTCTC	4 cut(s)	17, 156, 187, 701
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	2 cut(s)	17, 156
BsoBI	CYCGRG	2 cut(s)	35, 594
Bsp119I	TTCGAA	1 cut(s)	627
Bsp1286I	GDGCHC	2 cut(s)	210, 584
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	346, 442, 784
Bsp68I	TCGCGA	1 cut(s)	234
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	1 cut(s)	354
BspQI	GCTCTTC	1 cut(s)	750
BspT104I	TTCGAA	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	589
BspTNI	GGTCTC	2 cut(s)	17, 156
BsrBI	CCGCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	453, 693
BssMI	GATC	3 cut(s)	346, 442, 784
BssT1I	CCWWGG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	3 cut(s)	154, 183, 750
BstAUI	TGTACA	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	155, 539
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	3 cut(s)	349, 445, 787
BstMAI	GTCTC	4 cut(s)	17, 156, 187, 701
BstMBI	GATC	3 cut(s)	346, 442, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 420
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	182
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	103
BtuMI	TCGCGA	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	74
CaiI	CAGNNNCTG	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	169, 590
CspAI	ACCGGT	1 cut(s)	430
CviAII	CATG	2 cut(s)	91, 109
CviQI	GTAC	2 cut(s)	169, 590
DdeI	CTNAG	2 cut(s)	155, 539
DpnI	GATC	3 cut(s)	348, 444, 786
DpnII	GATC	3 cut(s)	346, 442, 784
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	154, 183, 750
EarI	CTCTTC	3 cut(s)	154, 183, 750
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	693
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	2 cut(s)	17, 156
Eco32I	GATATC	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	208
Eco88I	CYCGRG	2 cut(s)	35, 594
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	249
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	2 cut(s)	94, 112
FatI	CATG	2 cut(s)	90, 108
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	41, 182
FokI	GGATG	1 cut(s)	659
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	41, 182
FspBI	CTAG	2 cut(s)	65, 459
GluI	GCNGC	2 cut(s)	41, 182
GsuI	CTGGAG	3 cut(s)	308, 371, 659
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	2 cut(s)	94, 112
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	272, 574
Hpy188I	TCNGA	2 cut(s)	127, 540
Hpy188III	TCNNGA	6 cut(s)	35, 233, 344, 350, 638, 801
Hpy8I	GTNNAC	2 cut(s)	272, 574
HpyAV	CCTTC	5 cut(s)	252, 296, 475, 580, 697
HpyCH4V	TGCA	6 cut(s)	108, 184, 221, 511, 553, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 420
HpyF3I	CTNAG	2 cut(s)	155, 539
Hsp92II	CATG	2 cut(s)	94, 112
KpnI	GGTACC	1 cut(s)	593
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	346, 442, 784
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	4 cut(s)	292, 352, 420, 682
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	520, 729
MaeI	CTAG	2 cut(s)	65, 459
MalI	GATC	3 cut(s)	348, 444, 786
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	3 cut(s)	346, 442, 784
MboII	GAAGA	4 cut(s)	171, 200, 647, 767
MfeI	CAATTG	1 cut(s)	548
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	210, 584
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	6 cut(s)	140, 404, 548, 727, 750, 780
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	3 cut(s)	150, 493, 624
Mox20I	TGGCCA	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	292, 420
NdeII	GATC	3 cut(s)	346, 442, 784
NlaIII	CATG	2 cut(s)	94, 112
NlaIV	GGNNCC	1 cut(s)	591
NruI	TCGCGA	1 cut(s)	234
NspI	RCATGY	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	627
PaeR7I	CTCGAG	2 cut(s)	35, 594
PciSI	GCTCTTC	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	633
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	42, 183
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	591
PspXI	VCTCGAGB	1 cut(s)	594
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	346
RruI	TCGCGA	1 cut(s)	234
RsaI	GTAC	2 cut(s)	170, 591
RsaNI	GTAC	2 cut(s)	169, 590
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	41, 182
Sau3AI	GATC	3 cut(s)	346, 442, 784
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	210, 584
SfaNI	GCATC	2 cut(s)	520, 729
SfcI	CTRYAG	1 cut(s)	182
Sfr274I	CTCGAG	2 cut(s)	35, 594
SfuI	TTCGAA	1 cut(s)	627
SlaI	CTCGAG	2 cut(s)	35, 594
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	35, 594
SmoI	CTYRAG	2 cut(s)	35, 594
Sse9I	AATT	6 cut(s)	140, 404, 548, 727, 750, 780
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	65, 459
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	693
TaqI	TCGA	8 cut(s)	36, 80, 564, 584, 595, 627, 658, 748
TasI	AATT	6 cut(s)	140, 404, 548, 727, 750, 780
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	110
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	125, 633, 716
TspRI	CASTG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	94
XhoI	CTCGAG	2 cut(s)	35, 594
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	65, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.