Rh7CG339100

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000408
Physical Location & Seq
Forward (+)
37971043 .. 37972505
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG339100.1

Sequence Viewer

Length: 882 bp
ATGGCACAGCATAACAAGGTATTGCATCTCCCACAGGAGGAACTCAAGAGATTTGCAGTGGAAATGGAGAATGGAGTAAAGCTCGTTTGCAAGTGCTCTAAGGTTCGTTTGTGGGCAAGCTACAAAAAGTACGAATACACCAACAAACTTCTTGGATTGGATGAGTTTTGCCGGAGACAGGCAAGTCTACTGAGAGAGCAAGTAGCAAGGGATGTAAGGGAGACGTCGGCTTCCATTAGGAATGTGAAGGAAGAGATGTTGGTTTTGTTAAGTAATACAGAGATAGTGATCAAGCGAATGAAATTTAGCACTGGTGTTGCACAAAAATCCTTTGATAAGGCTCTATCGTCAATCCCTGAATGCTATGAAACAGTGGCTGATGATCAAAGACGTAAAAATTTTGAGTTTAAGCGACATATCCGACCCATAGCAGGAGGAGCTCCCTTCATAACCTGTTATAAATGCACATACCCCCTGCAGATACCTGCAGGTTTTCGCCTTTCTAGGAGATGGCAGAAACTCAGATGTGGTGCTTGTTCGGCGGTTCTTAAGTTTTCACTCAGAATGAAATCTCATGTTGTCCCATATGAAGTATGGAGTGCCAAAGAGCCTCCAACAGCTGAGGATGACAGAAACCTGGCTTCAACATCTCAACAATTTGATAGTCAACATGCGGATCCCGAGACATATTCTAATGATTTCGTTGATAGACTCTTATACTACAAAAGCACCTCTACCCAAGTAAATACTGGAACACCCTCTGATTCTATCCAATGCATTTCCGAAACATCGGAAATCTGGACCACCGATTTAGAAAGTAGAGATGAAAGTATGTCTTCCCCAACATTATTCATGGGCGTATCTAGCTATGTATATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

293

Amino Acids

33.7

Weight (kDa)

8.75

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 5 - 84 1.1e-09 Arabidopsis broad-spectrum mildew resistance protein RPW8
Zn_ribbon_12 PF11331 144 - 187 9.2e-18 EDR4 zinc-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AasI GACNNNNNNGTC 1 cut(s) 183
AatII GACGTC 1 cut(s) 227
Acc36I ACCTGC 2 cut(s) 479, 493
AccI GTMKAC 1 cut(s) 187
AciI CCGC 2 cut(s) 542, 674
AclWI GGATC 2 cut(s) 671, 684
AcsI RAATTY 2 cut(s) 302, 397
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 37, 178, 431
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 1 cut(s) 645
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 5 cut(s) 82, 120, 440, 620, 867
AluI AGCT 5 cut(s) 82, 120, 440, 620, 867
Alw21I GWGCWC 2 cut(s) 98, 442
Alw26I GTCTC 3 cut(s) 169, 215, 677
AlwI GGATC 2 cut(s) 671, 684
AlwNI CAGNNNCTG 1 cut(s) 377
Ama87I CYCGRG 1 cut(s) 680
ApoI RAATTY 2 cut(s) 302, 397
AspS9I GGNCC 1 cut(s) 801
AvaI CYCGRG 1 cut(s) 680
AvaII GGWCC 1 cut(s) 801
BamHI GGATCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 2 cut(s) 98, 442
BbvCI CCTCAGC 1 cut(s) 621
BccI CCATC 1 cut(s) 504
BciT130I CCWGG 1 cut(s) 638
BclI TGATCA 2 cut(s) 288, 382
BcoDI GTCTC 3 cut(s) 169, 215, 677
BfaI CTAG 2 cut(s) 504, 864
BfmI CTRYAG 2 cut(s) 476, 486
BfrI CTTAAG 1 cut(s) 548
BfuAI ACCTGC 2 cut(s) 479, 493
Bme1390I CCNGG 1 cut(s) 638
Bme18I GGWCC 1 cut(s) 801
BmeT110I CYCGRG 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 801
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 638
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 828
BplI GAGNNNNNCTC 2 cut(s) 66, 98
Bpu10I CCTNAGC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 224
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 178, 431
Bse1I ACTGG 2 cut(s) 316, 754
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 638
BseGI GGATG 3 cut(s) 166, 217, 631
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 3 cut(s) 37, 178, 431
BseMII CTCAG 4 cut(s) 182, 535, 574, 612
BseNI ACTGG 2 cut(s) 316, 754
BseRI GAGGAG 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 98, 442
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 37, 178, 431
BsmAI GTCTC 3 cut(s) 169, 215, 677
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 680
Bsp1286I GDGCHC 2 cut(s) 98, 442
Bsp143I GATC 3 cut(s) 288, 382, 676
BspACI CCGC 2 cut(s) 542, 674
BspCNI CTCAG 4 cut(s) 183, 534, 573, 613
BspLI GGNNCC 1 cut(s) 678
BspMAI CTGCAG 2 cut(s) 480, 490
BspMI ACCTGC 2 cut(s) 479, 493
BspPI GGATC 2 cut(s) 671, 684
BspTI CTTAAG 1 cut(s) 548
BsrI ACTGG 2 cut(s) 316, 754
BssMI GATC 3 cut(s) 288, 382, 676
BssNI GRCGYC 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 5 cut(s) 99, 191, 521, 560, 621
BstF5I GGATG 3 cut(s) 166, 217, 631
BstKTI GATC 3 cut(s) 291, 385, 679
BstMAI GTCTC 3 cut(s) 169, 215, 677
BstMBI GATC 3 cut(s) 288, 382, 676
BstMWI GCNNNNNNNGC 3 cut(s) 437, 539, 864
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 1 cut(s) 636
BstSFI CTRYAG 2 cut(s) 476, 486
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BtsCI GGATG 3 cut(s) 166, 217, 631
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 63, 309, 378
BveI ACCTGC 2 cut(s) 479, 493
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 801
Csp6I GTAC 1 cut(s) 130
CviAII CATG 3 cut(s) 575, 671, 853
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 5 cut(s) 99, 191, 521, 560, 621
DpnI GATC 3 cut(s) 290, 384, 678
DpnII GATC 3 cut(s) 288, 382, 676
DrdI GACNNNNNNGTC 1 cut(s) 183
DseDI GACNNNNNNGTC 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 801
Eco53kI GAGCTC 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 636
EcoT22I ATGCAT 1 cut(s) 779
EcoT38I GRGCYC 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 3 cut(s) 578, 674, 856
FalI AAGNNNNNCTT 2 cut(s) 820, 852
FaqI GGGAC 1 cut(s) 566
FatI CATG 3 cut(s) 574, 670, 852
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 2 cut(s) 288, 382
FblI GTMKAC 1 cut(s) 187
FokI GGATG 3 cut(s) 173, 224, 638
FriOI GRGCYC 1 cut(s) 442
FspBI CTAG 2 cut(s) 504, 864
HapII CCGG 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 3 cut(s) 578, 674, 856
HincII GTYRAC 1 cut(s) 668
HindII GTYRAC 1 cut(s) 668
HinfI GANTC 2 cut(s) 711, 764
HpaII CCGG 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 188, 668
Hpy188I TCNGA 7 cut(s) 422, 524, 563, 763, 784, 793, 881
Hpy188III TCNNGA 3 cut(s) 46, 680, 799
Hpy8I GTNNAC 2 cut(s) 188, 668
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 241, 454
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 224, 391
HpyCH4V TGCA 8 cut(s) 25, 56, 90, 320, 465, 478, 488, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 437, 539, 864
HpyF3I CTNAG 5 cut(s) 99, 191, 521, 560, 621
HpySE526I ACGT 2 cut(s) 224, 391
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 3 cut(s) 578, 674, 856
Ksp22I TGATCA 2 cut(s) 288, 382
Kzo9I GATC 3 cut(s) 288, 382, 676
LmnI GCTCC 2 cut(s) 437, 445
LweI GCATC 1 cut(s) 34
MaeI CTAG 2 cut(s) 504, 864
MaeII ACGT 2 cut(s) 224, 391
MalI GATC 3 cut(s) 290, 384, 678
MboI GATC 3 cut(s) 288, 382, 676
MboII GAAGA 2 cut(s) 263, 828
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 98, 442
MluCI AATT 3 cut(s) 302, 397, 656
MlyI GAGTC 1 cut(s) 705
MmeI TCCRAC 2 cut(s) 445, 638
MnlI CCTC 6 cut(s) 31, 428, 616, 621, 742, 769
Mph1103I ATGCAT 1 cut(s) 779
MseI TTAA 3 cut(s) 269, 408, 549
MspA1I CMGCKG 1 cut(s) 620
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 1 cut(s) 638
MwoI GCNNNNNNNGC 3 cut(s) 437, 539, 864
NdeI CATATG 1 cut(s) 586
NdeII GATC 3 cut(s) 288, 382, 676
NlaIII CATG 3 cut(s) 578, 674, 856
NlaIV GGNNCC 1 cut(s) 678
NsiI ATGCAT 1 cut(s) 779
NspI RCATGY 1 cut(s) 674
PctI GAATGC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 764
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
PsiI TTATAA 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 636
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 1 cut(s) 801
PstI CTGCAG 2 cut(s) 480, 490
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 442
SaqAI TTAA 3 cut(s) 269, 408, 549
Sau3AI GATC 3 cut(s) 288, 382, 676
Sau96I GGNCC 1 cut(s) 801
SbfI CCTGCAGG 1 cut(s) 490
SchI GAGTC 1 cut(s) 705
ScrFI CCNGG 1 cut(s) 638
SdaI CCTGCAGG 1 cut(s) 490
SduI GDGCHC 2 cut(s) 98, 442
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 2 cut(s) 476, 486
SinI GGWCC 1 cut(s) 801
SmlI CTYRAG 2 cut(s) 44, 548
SmoI CTYRAG 2 cut(s) 44, 548
Sse8387I CCTGCAGG 1 cut(s) 490
Sse9I AATT 3 cut(s) 302, 397, 656
SsiI CCGC 2 cut(s) 542, 674
SspMI CTAG 2 cut(s) 504, 864
SstI GAGCTC 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 227, 394
TasI AATT 3 cut(s) 302, 397, 656
TfiI GAWTC 1 cut(s) 764
Tru1I TTAA 3 cut(s) 269, 408, 549
Tru9I TTAA 3 cut(s) 269, 408, 549
TscAI CASTG 3 cut(s) 63, 316, 378
TspDTI ATGAA 7 cut(s) 314, 381, 436, 581, 603, 840, 841
TspRI CASTG 3 cut(s) 63, 316, 378
Vha464I CTTAAG 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 801
XapI RAATTY 2 cut(s) 302, 397
XceI RCATGY 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 2 cut(s) 591, 746
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 2 cut(s) 504, 864
ZraI GACGTC 1 cut(s) 225
Zsp2I ATGCAT 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.