Rmu_sc0007722.1_g000010
WRKY Family

WRKY Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007722.1
OG0000408
Physical Location & Seq
Reverse (-)
39819 .. 42929
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007722.1_g000010.1.cds

Sequence Viewer

Length: 1353 bp
atgttgaaccaggcgtattggggcagcagcagtaacaagtggcagcaaactgcagcagcagcgggctgcgacagcaagcggcggcagcaagttcggcagtgttttggacagcagcaagcagcagttttggataacaacaagcagcagtttctgcaacagttttggacagcaagggctgcaggcttgcggcaggagcagcaagaaggcagcaggggctacaggcttgctgcaggagcagcagaaaggcagcaggggctgcagacttacggcatgaggagcagggaggctgcgatcgtcttcgcttcacaagccacccaaattcatattggcaggtctgaatctactaataaggttgccaccagcagagagtgcatgctctcgtcgctggtgcttccgcctgtcactgctctgaccgacgatcctgatgctggttccggtattgattccaccgatgccgggcttagcgtgtggaactgtcgcgtatggggggactgttgcaactgcatgaagcctagctatgcaaaccaacttgctgcattggataggtctcttagacgactgttggagatactaaagcttgagcagatgaggaacgtggtggagctcttgcttttgccaaggagaagaaatgaccgacaagatgaattggtgagaagacagttggaaattctgaaagcgctgcaagaaaccggggatatgtttagagcgcagcaggaagtcaataatatgatgtttgagcgcctcctcaaagattttgaatccactcttgaatgcttgaagccacttatagaagagatggtggagtctaacaagttgttgcatcttccaaatgaggaacaagaatatttcataatgcaaatggaaaaaggtgtagagttaattcaccagtgctctgaggcttgcaagggaggactaaggtataaaaagtacgaatacaccaagaaacttatgggattggatgaatgtcttcaaaggcttttcattgaactcaaagagcaggtagtaaggaatgtgaaggagaccttggtgcttataagtaacttggaaaaagagatcacagaaattgaaggggttgttgtggcacaaagtgatgaaattgagtgttcgattccagcacctcaacctcgatcacctttagttggagaggataaatcgagaggtgatcgaggatacattcgatgcactggatccagtgtacgaagtatgcaaggaacaagggatgtgatcaaggaaagatgggactcggaaaagttgccggatgtcaagcaaattaaagggaaaggcttgttcgaatatccggttgctggtgaatatgaccttccaccatttccaatgggacttgcactggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

450

Amino Acids

51.11

Weight (kDa)

5.96

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1034
Acc36I ACCTGC 2 cut(s) 321, 988
AccII CGCG 1 cut(s) 480
AciI CCGC 5 cut(s) 62, 79, 82, 187, 395
AclWI GGATC 3 cut(s) 413, 1182, 1195
AcsI RAATTY 2 cut(s) 318, 666
AdeI CACNNNGTG 1 cut(s) 1088
AfaI GTAC 2 cut(s) 929, 1197
AfeI AGCGCT 1 cut(s) 678
AfiI CCNNNNNNNGG 4 cut(s) 428, 456, 1139, 1304
AgsI TTSAA 7 cut(s) 7, 758, 770, 778, 971, 986, 1067
AjnI CCWGG 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AluBI AGCT 3 cut(s) 516, 577, 604
AluI AGCT 3 cut(s) 516, 577, 604
Alw21I GWGCWC 2 cut(s) 606, 893
Alw26I GTCTC 2 cut(s) 552, 1013
AlwI GGATC 3 cut(s) 413, 1182, 1195
AlwNI CAGNNNCTG 2 cut(s) 151, 256
Aor51HI AGCGCT 1 cut(s) 678
ApoI RAATTY 2 cut(s) 318, 666
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 3 cut(s) 679, 709, 741
AsuC2I CCSGG 2 cut(s) 457, 691
AsuHPI GGTGA 5 cut(s) 661, 875, 1122, 1172, 1319
AsuII TTCGAA 1 cut(s) 1290
BamHI GGATCC 1 cut(s) 1187
BanII GRGCYC 1 cut(s) 606
BbsI GAAGAC 3 cut(s) 289, 661, 959
Bbv12I GWGCWC 2 cut(s) 606, 893
BccI CCATC 2 cut(s) 790, 1230
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 4 cut(s) 74, 108, 407, 441
BciT130I CCWGG 1 cut(s) 11
BciVI GTATCC 1 cut(s) 1163
BclI TGATCA 1 cut(s) 1224
BcnI CCSGG 2 cut(s) 457, 691
BcoDI GTCTC 2 cut(s) 552, 1013
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 5 cut(s) 51, 177, 217, 228, 257
BfoI RGCGCY 2 cut(s) 680, 742
BfuAI ACCTGC 2 cut(s) 321, 988
BfuI GTATCC 1 cut(s) 1163
BlpI GCTNAGC 1 cut(s) 461
Bme1390I CCNGG 3 cut(s) 11, 457, 691
BmiI GGNNCC 2 cut(s) 433, 1189
BmrFI CCNGG 3 cut(s) 11, 457, 691
BmsI GCATC 4 cut(s) 415, 442, 829, 1169
BpiI GAAGAC 3 cut(s) 289, 661, 959
Bpu1102I GCTNAGC 1 cut(s) 461
Bpu14I TTCGAA 1 cut(s) 1290
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 2 cut(s) 457, 691
BsaI GGTCTC 2 cut(s) 552, 1013
BsaJI CCNNGG 3 cut(s) 617, 690, 1023
BsaWI WCCGGW 2 cut(s) 434, 1297
Bsc4I CCNNNNNNNGG 4 cut(s) 428, 456, 1139, 1304
Bse1I ACTGG 4 cut(s) 886, 1189, 1191, 1350
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 3 cut(s) 617, 690, 1023
BseGI GGATG 3 cut(s) 964, 1225, 1264
BseLI CCNNNNNNNGG 4 cut(s) 428, 456, 1139, 1304
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 4 cut(s) 886, 1189, 1191, 1350
BseRI GAGGAG 2 cut(s) 289, 734
Bsh1236I CGCG 1 cut(s) 480
Bsh1285I CGRYCG 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 2 cut(s) 606, 893
BsiSI CCGG 5 cut(s) 435, 456, 690, 1256, 1298
BslFI GGGAC 2 cut(s) 503, 1253
BslI CCNNNNNNNGG 4 cut(s) 428, 456, 1139, 1304
BsmAI GTCTC 2 cut(s) 552, 1013
BsmFI GGGAC 2 cut(s) 503, 1253
BsmI GAATGC 1 cut(s) 776
Bso31I GGTCTC 2 cut(s) 552, 1013
Bsp119I TTCGAA 1 cut(s) 1290
Bsp1286I GDGCHC 2 cut(s) 606, 893
Bsp143I GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
Bsp1720I GCTNAGC 1 cut(s) 461
BspACI CCGC 5 cut(s) 62, 79, 82, 187, 395
BspCNI CTCAG 1 cut(s) 886
BspFNI CGCG 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 433, 1189
BspMAI CTGCAG 4 cut(s) 55, 181, 232, 261
BspMI ACCTGC 2 cut(s) 321, 988
BspPI GGATC 3 cut(s) 413, 1182, 1195
BspT104I TTCGAA 1 cut(s) 1290
BspTNI GGTCTC 2 cut(s) 552, 1013
BsrI ACTGG 4 cut(s) 886, 1189, 1191, 1350
BssECI CCNNGG 3 cut(s) 617, 690, 1023
BssMI GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
BssT1I CCWWGG 2 cut(s) 617, 1023
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 5 cut(s) 159, 476, 494, 561, 660
Bst6I CTCTTC 1 cut(s) 786
BstAPI GCANNNNNTGC 4 cut(s) 151, 176, 256, 369
BstBI TTCGAA 1 cut(s) 1290
BstC8I GCNNGC 8 cut(s) 64, 77, 117, 181, 185, 225, 374, 901
BstDEI CTNAG 4 cut(s) 461, 551, 894, 914
BstF5I GGATG 3 cut(s) 964, 1225, 1264
BstFNI CGCG 1 cut(s) 480
BstH2I RGCGCY 2 cut(s) 680, 742
BstHHI GCGC 3 cut(s) 679, 709, 741
BstKTI GATC 7 cut(s) 294, 421, 1056, 1130, 1165, 1190, 1227
BstMAI GTCTC 2 cut(s) 552, 1013
BstMBI GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
BstMCI CGRYCG 1 cut(s) 294
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 9, 455, 689
BstSFI CTRYAG 5 cut(s) 51, 177, 217, 228, 257
BstUI CGCG 1 cut(s) 480
BstV2I GAAGAC 3 cut(s) 289, 661, 959
BstX2I RGATCY 1 cut(s) 1187
BstYI RGATCY 1 cut(s) 1187
BsuI GTATCC 1 cut(s) 1163
BtsCI GGATG 3 cut(s) 964, 1225, 1264
BtsI GCAGTG 2 cut(s) 104, 402
BtsIMutI CAGTG 6 cut(s) 104, 402, 893, 1182, 1198, 1343
BveI ACCTGC 2 cut(s) 321, 988
Cac8I GCNNGC 8 cut(s) 64, 77, 117, 181, 185, 225, 374, 901
CaiI CAGNNNCTG 2 cut(s) 151, 256
CfoI GCGC 3 cut(s) 679, 709, 741
Csp6I GTAC 2 cut(s) 928, 1196
CviAII CATG 3 cut(s) 271, 373, 505
CviQI GTAC 2 cut(s) 928, 1196
DdeI CTNAG 4 cut(s) 461, 551, 894, 914
DpnI GATC 7 cut(s) 293, 420, 1055, 1129, 1164, 1189, 1226
DpnII GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
DraIII CACNNNGTG 1 cut(s) 1088
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
EciI GGCGGA 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 2 cut(s) 617, 1023
Eco24I GRGCYC 1 cut(s) 606
Eco31I GGTCTC 2 cut(s) 552, 1013
Eco47III AGCGCT 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 604
EcoICRI GAGCTC 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 2 cut(s) 617, 1023
EcoT38I GRGCYC 1 cut(s) 606
ErhI CCWWGG 2 cut(s) 617, 1023
FaeI CATG 3 cut(s) 274, 376, 508
FalI AAGNNNNNCTT 2 cut(s) 1007, 1039
FaqI GGGAC 2 cut(s) 503, 1253
FatI CATG 3 cut(s) 270, 372, 504
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 1224
FokI GGATG 3 cut(s) 971, 1232, 1271
FriOI GRGCYC 1 cut(s) 606
FspBI CTAG 1 cut(s) 513
GlaI GCGC 3 cut(s) 678, 708, 740
HaeII RGCGCY 2 cut(s) 680, 742
HapII CCGG 5 cut(s) 435, 456, 690, 1256, 1298
HhaI GCGC 3 cut(s) 679, 709, 741
Hin1II CATG 3 cut(s) 274, 376, 508
Hin6I GCGC 3 cut(s) 677, 707, 739
HinP1I GCGC 3 cut(s) 677, 707, 739
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 6 cut(s) 338, 443, 758, 803, 1108, 1241
HpaII CCGG 5 cut(s) 435, 456, 690, 1256, 1298
HphI GGTGA 5 cut(s) 661, 875, 1122, 1172, 1319
Hpy166II GTNNAC 1 cut(s) 1196
Hpy188I TCNGA 5 cut(s) 337, 411, 672, 895, 1246
Hpy188III TCNNGA 3 cut(s) 422, 767, 1155
Hpy8I GTNNAC 1 cut(s) 1196
Hpy99I CGWCG 2 cut(s) 385, 419
HpyAV CCTTC 4 cut(s) 197, 1009, 1061, 1328
HpyCH4III ACNGT 5 cut(s) 159, 476, 494, 561, 660
HpyCH4IV ACGT 1 cut(s) 594
HpyF3I CTNAG 4 cut(s) 461, 551, 894, 914
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 3 cut(s) 274, 376, 508
HspAI GCGC 3 cut(s) 677, 707, 739
Ksp22I TGATCA 1 cut(s) 1224
Kzo9I GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
LmnI GCTCC 4 cut(s) 193, 233, 276, 601
LweI GCATC 4 cut(s) 415, 442, 829, 1169
MaeI CTAG 1 cut(s) 513
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 3 cut(s) 32, 400, 1037
MalI GATC 7 cut(s) 293, 420, 1055, 1129, 1164, 1189, 1226
MboI GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
MboII GAAGA 6 cut(s) 289, 636, 666, 803, 815, 959
MflI RGATCY 1 cut(s) 1187
MhlI GDGCHC 2 cut(s) 606, 893
MluCI AATT 7 cut(s) 318, 644, 666, 879, 1062, 1095, 1269
MlyI GAGTC 2 cut(s) 812, 1235
MmeI TCCRAC 3 cut(s) 543, 642, 1120
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 2 cut(s) 878, 1272
MslI CAYNNNNRTG 1 cut(s) 1348
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 5 cut(s) 435, 456, 690, 1256, 1298
MspR9I CCNGG 3 cut(s) 11, 457, 691
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 1 cut(s) 480
NciI CCSGG 2 cut(s) 457, 691
NdeII GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
NlaIII CATG 3 cut(s) 274, 376, 508
NlaIV GGNNCC 2 cut(s) 433, 1189
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 1 cut(s) 376
NspV TTCGAA 1 cut(s) 1290
PaeI GCATGC 1 cut(s) 376
PctI GAATGC 1 cut(s) 776
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 4 cut(s) 338, 443, 758, 1108
Ple19I CGATCG 1 cut(s) 294
PleI GAGTC 2 cut(s) 811, 1235
PpsI GAGTC 2 cut(s) 811, 1235
PsiI TTATAA 1 cut(s) 1034
Psp124BI GAGCTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 433, 1189
PstI CTGCAG 4 cut(s) 55, 181, 232, 261
PstNI CAGNNNCTG 2 cut(s) 151, 256
PsuI RGATCY 1 cut(s) 1187
PvuI CGATCG 1 cut(s) 294
RsaI GTAC 2 cut(s) 929, 1197
RsaNI GTAC 2 cut(s) 928, 1196
RseI CAYNNNNRTG 1 cut(s) 1348
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 878, 1272
Sau3AI GATC 7 cut(s) 291, 418, 1053, 1127, 1162, 1187, 1224
SchI GAGTC 2 cut(s) 812, 1235
ScrFI CCNGG 3 cut(s) 11, 457, 691
SduI GDGCHC 2 cut(s) 606, 893
SfaNI GCATC 4 cut(s) 415, 442, 829, 1169
SfcI CTRYAG 5 cut(s) 51, 177, 217, 228, 257
SfuI TTCGAA 1 cut(s) 1290
SmiMI CAYNNNNRTG 1 cut(s) 1348
SmlI CTYRAG 1 cut(s) 578
SmoI CTYRAG 1 cut(s) 578
SphI GCATGC 1 cut(s) 376
Sse9I AATT 7 cut(s) 318, 644, 666, 879, 1062, 1095, 1269
SsiI CCGC 5 cut(s) 62, 79, 82, 187, 395
SspI AATATT 1 cut(s) 845
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 3 cut(s) 9, 455, 689
StyI CCWWGG 2 cut(s) 617, 1023
TaaI ACNGT 5 cut(s) 159, 476, 494, 561, 660
TaiI ACGT 1 cut(s) 597
TaqI TCGA 6 cut(s) 1106, 1126, 1154, 1165, 1177, 1290
TaqII GACCGA 2 cut(s) 428, 648
TasI AATT 7 cut(s) 318, 644, 666, 879, 1062, 1095, 1269
TauI GCSGC 3 cut(s) 82, 85, 190
TfiI GAWTC 4 cut(s) 338, 443, 758, 1108
Tru1I TTAA 2 cut(s) 878, 1272
Tru9I TTAA 2 cut(s) 878, 1272
TscAI CASTG 6 cut(s) 104, 409, 893, 1189, 1198, 1350
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 7 cut(s) 311, 521, 657, 838, 970, 975, 1107
TspRI CASTG 6 cut(s) 104, 409, 893, 1189, 1198, 1350
XapI RAATTY 2 cut(s) 318, 666
XceI RCATGY 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 2 cut(s) 323, 946
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.