Rmu_sc0005784.1_g000004
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005784.1
Physical Location & Seq
Reverse (-)
13372 .. 14715
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005784.1_g000004.1.cds

Sequence Viewer

Length: 870 bp
atgttgcaagagataagggacgtgaaggagatattggatctgtcgaggaaaagccgcaaggagcttgaagaagtgaaggaggcacagttgagtatgcacaagttactgcagcagatagcagctcgagtagttgtaatggaagaggcctcaacttcggctgctgcaggaggaggtgctattgagatggtgccgaatcaaaatgaagggaatggcggcattcaagtggcatcattagatagagggacagggactgctctaggagcaatatttgggatgctacttgaactcgttatagaagtgaaggacaagaatgtgatgtttaagcctccgctccaagatctcaaatccactttagaatccttaaaaccatttgtcgaggagatggcacagcataacaaggtattgcatctcccacaggaggaactcaaaagatttgcagtggaaatggagaatggagtaaagctcgtttgcaagtgctctaaggttcgtttgtgggcaagctacaaaaagtacgaatacaccaacaaacttcttggattggatgagttttgccggagacaggcaagtgtactgagagagcaggtagcaagggatgtaagggagacgtcggcttccattagaaatgtgaaggaagagatgttggttttgttaagtaatacagagatggtgatcaagcgaatgaaatttagcactggttttgcacaaaaatcctttgataaggctcgatcgtcaatccctgaatgctatgaaacagtggctgatgatcaaaggcgtaaaatttttgagtttaagcgacatatcgatccccgaaactcccttttaaaaatacatttcccaatcaacacaagtcaccccgtgacaaaatcataa

Protein Analysis

289

Amino Acids

32.85

Weight (kDa)

9.02

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 608
Acc36I ACCTGC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 331
AciI CCGC 3 cut(s) 55, 213, 329
AclWI GGATC 2 cut(s) 45, 797
AcsI RAATTY 2 cut(s) 683, 777
AcyI GRCGYC 1 cut(s) 605
AdeI CACNNNGTG 1 cut(s) 856
AfaI GTAC 2 cut(s) 512, 570
AfiI CCNNNNNNNGG 2 cut(s) 418, 559
AgsI TTSAA 3 cut(s) 68, 221, 284
AjiI CACGTC 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 4 cut(s) 64, 122, 463, 501
AluI AGCT 4 cut(s) 64, 122, 463, 501
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 2 cut(s) 550, 596
AlwI GGATC 2 cut(s) 45, 797
AlwNI CAGNNNCTG 2 cut(s) 251, 758
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 109, 119, 158, 161
ApoI RAATTY 2 cut(s) 683, 777
AsuHPI GGTGA 2 cut(s) 679, 842
AvaI CYCGRG 1 cut(s) 123
BanI GGYRCC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 4 cut(s) 121, 131, 145, 148
BccI CCATC 3 cut(s) 178, 376, 658
BclI TGATCA 2 cut(s) 669, 763
BcoDI GTCTC 2 cut(s) 550, 596
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 2 cut(s) 107, 162
BfuAI ACCTGC 1 cut(s) 571
BglII AGATCT 1 cut(s) 337
BisI GCNGC 6 cut(s) 55, 110, 120, 159, 162, 214
BlsI GCNGC 6 cut(s) 56, 111, 121, 160, 163, 215
BmeT110I CYCGRG 1 cut(s) 123
BmgBI CACGTC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 3 cut(s) 236, 264, 415
BplI GAGNNNNNCTC 2 cut(s) 447, 479
Bsa29I ATCGAT 1 cut(s) 801
BsaBI GATNNNNATC 1 cut(s) 668
BsaHI GRCGYC 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 559
Bse1I ACTGG 1 cut(s) 697
Bse8I GATNNNNATC 1 cut(s) 668
BseCI ATCGAT 1 cut(s) 801
BseGI GGATG 3 cut(s) 279, 547, 598
BseJI GATNNNNATC 1 cut(s) 668
BseLI CCNNNNNNNGG 2 cut(s) 418, 559
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 1 cut(s) 697
BseRI GAGGAG 2 cut(s) 183, 392
BseXI GCAGC 4 cut(s) 121, 131, 145, 148
Bsh1285I CGRYCG 1 cut(s) 728
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 801
BsiEI CGRYCG 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 553
BslFI GGGAC 3 cut(s) 32, 256, 262
BslI CCNNNNNNNGG 2 cut(s) 418, 559
BsmAI GTCTC 2 cut(s) 550, 596
BsmBI CGTCTC 1 cut(s) 596
BsmFI GGGAC 3 cut(s) 32, 256, 262
BsmI GAATGC 2 cut(s) 216, 746
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 6 cut(s) 37, 337, 669, 725, 763, 802
BspACI CCGC 3 cut(s) 55, 213, 329
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 564
BspDI ATCGAT 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 189
BspMAI CTGCAG 2 cut(s) 111, 166
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 2 cut(s) 45, 797
BspT107I GGYRCC 1 cut(s) 187
BsrBI CCGCTC 1 cut(s) 331
BsrI ACTGG 1 cut(s) 697
BssMI GATC 6 cut(s) 37, 337, 669, 725, 763, 802
BssNI GRCGYC 1 cut(s) 605
Bst4CI ACNGT 2 cut(s) 87, 754
Bst6I CTCTTC 2 cut(s) 135, 627
BstACI GRCGYC 1 cut(s) 605
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 2 cut(s) 480, 572
BstF5I GGATG 3 cut(s) 279, 547, 598
BstKTI GATC 6 cut(s) 40, 340, 672, 728, 766, 805
BstMAI GTCTC 2 cut(s) 550, 596
BstMBI GATC 6 cut(s) 37, 337, 669, 725, 763, 802
BstMCI CGRYCG 1 cut(s) 728
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 107, 162
BstV1I GCAGC 4 cut(s) 121, 131, 145, 148
BstX2I RGATCY 2 cut(s) 37, 337
BstYI RGATCY 2 cut(s) 37, 337
Bsu15I ATCGAT 1 cut(s) 801
BsuRI GGCC 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 801
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 3 cut(s) 279, 547, 598
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 3 cut(s) 444, 690, 759
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 499
CaiI CAGNNNCTG 2 cut(s) 251, 758
ClaI ATCGAT 1 cut(s) 801
Csp6I GTAC 2 cut(s) 511, 569
CviQI GTAC 2 cut(s) 511, 569
DdeI CTNAG 2 cut(s) 480, 572
DpnI GATC 6 cut(s) 39, 339, 671, 727, 765, 804
DpnII GATC 6 cut(s) 37, 337, 669, 725, 763, 802
DraI TTTAAA 1 cut(s) 822
DraIII CACNNNGTG 1 cut(s) 856
Eam1104I CTCTTC 2 cut(s) 135, 627
EarI CTCTTC 2 cut(s) 135, 627
Eco147I AGGCCT 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 596
FaiI YATR 6 cut(s) 95, 293, 393, 747, 798, 868
FaqI GGGAC 3 cut(s) 32, 256, 262
FbaI TGATCA 2 cut(s) 669, 763
Fnu4HI GCNGC 6 cut(s) 55, 110, 120, 159, 162, 214
FokI GGATG 3 cut(s) 286, 554, 605
Fsp4HI GCNGC 6 cut(s) 55, 110, 120, 159, 162, 214
FspBI CTAG 1 cut(s) 257
GluI GCNGC 6 cut(s) 55, 110, 120, 159, 162, 214
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 553
Hin1I GRCGYC 1 cut(s) 605
HinfI GANTC 2 cut(s) 193, 356
HpaII CCGG 1 cut(s) 553
HphI GGTGA 2 cut(s) 679, 842
Hpy166II GTNNAC 1 cut(s) 569
Hpy8I GTNNAC 1 cut(s) 569
Hpy99I CGWCG 1 cut(s) 610
HpyAV CCTTC 5 cut(s) 19, 70, 197, 295, 622
HpyCH4III ACNGT 2 cut(s) 87, 754
HpyCH4IV ACGT 2 cut(s) 21, 605
HpyCH4V TGCA 8 cut(s) 7, 97, 109, 164, 406, 437, 471, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 480, 572
HpySE526I ACGT 2 cut(s) 21, 605
Hsp92I GRCGYC 1 cut(s) 605
Ksp22I TGATCA 2 cut(s) 669, 763
Kzo9I GATC 6 cut(s) 37, 337, 669, 725, 763, 802
LmnI GCTCC 3 cut(s) 61, 260, 336
LpnPI CCDG 8 cut(s) 150, 231, 401, 545, 566, 566, 678, 750
Lsp1109I GCAGC 4 cut(s) 121, 131, 145, 148
LweI GCATC 3 cut(s) 236, 264, 415
MaeI CTAG 1 cut(s) 257
MaeII ACGT 2 cut(s) 21, 605
MaeIII GTNAC 3 cut(s) 102, 848, 856
MalI GATC 6 cut(s) 39, 339, 671, 727, 765, 804
MbiI CCGCTC 1 cut(s) 331
MboI GATC 6 cut(s) 37, 337, 669, 725, 763, 802
MboII GAAGA 3 cut(s) 80, 152, 644
MflI RGATCY 2 cut(s) 37, 337
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 2 cut(s) 683, 777
MseI TTAA 5 cut(s) 321, 362, 650, 789, 821
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 1 cut(s) 553
Mva1269I GAATGC 2 cut(s) 216, 746
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 6 cut(s) 37, 337, 669, 725, 763, 802
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 848, 856
PaeR7I CTCGAG 1 cut(s) 123
PceI AGGCCT 1 cut(s) 146
PctI GAATGC 2 cut(s) 216, 746
PfeI GAWTC 2 cut(s) 193, 356
PkrI GCNGC 6 cut(s) 56, 111, 121, 160, 163, 215
Ple19I CGATCG 1 cut(s) 728
PspN4I GGNNCC 1 cut(s) 189
PspXI VCTCGAGB 1 cut(s) 123
PstI CTGCAG 2 cut(s) 111, 166
PstNI CAGNNNCTG 2 cut(s) 251, 758
PsuI RGATCY 2 cut(s) 37, 337
PvuI CGATCG 1 cut(s) 728
RsaI GTAC 2 cut(s) 512, 570
RsaNI GTAC 2 cut(s) 511, 569
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 5 cut(s) 321, 362, 650, 789, 821
SatI GCNGC 6 cut(s) 55, 110, 120, 159, 162, 214
Sau3AI GATC 6 cut(s) 37, 337, 669, 725, 763, 802
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 3 cut(s) 236, 264, 415
SfcI CTRYAG 2 cut(s) 107, 162
Sfr274I CTCGAG 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 2 cut(s) 683, 777
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 3 cut(s) 55, 213, 329
SspI AATATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 146
TaaI ACNGT 2 cut(s) 87, 754
TaiI ACGT 2 cut(s) 24, 608
TaqI TCGA 5 cut(s) 44, 124, 375, 724, 801
TasI AATT 2 cut(s) 683, 777
TatI WGTACW 1 cut(s) 568
TauI GCSGC 2 cut(s) 57, 216
TfiI GAWTC 2 cut(s) 193, 356
Tru1I TTAA 5 cut(s) 321, 362, 650, 789, 821
Tru9I TTAA 5 cut(s) 321, 362, 650, 789, 821
TscAI CASTG 3 cut(s) 444, 697, 759
TseFI GTSAC 2 cut(s) 848, 856
TseI GCWGC 4 cut(s) 109, 119, 158, 161
Tsp45I GTSAC 2 cut(s) 848, 856
TspDTI ATGAA 3 cut(s) 216, 695, 762
TspRI CASTG 3 cut(s) 444, 697, 759
XapI RAATTY 2 cut(s) 683, 777
XhoI CTCGAG 1 cut(s) 123
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.