Rorug06G0475700

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000408
Physical Location & Seq
Reverse (-)
59810498 .. 59812556
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0475700.1

Sequence Viewer

Length: 690 bp
ATGGGAATGAGCAGCATGAAGGTGCATCAGTTCGCACGTGGACACTGGGACTCATCCACCACCAATCTTGAACCCTCCCTCAGCCTTGGATGCAAGCGCTTACGCCCTCTTGCTCCCAAACTCTCCGACACTACTGCAACCACTACTCTCGCTCCTTTCGATCTCAAGAGCTTCATCAGACCCGAAAGTGGCCCTAGAAACAAGCTAGCATCTCCTCATGACCATGAGAAGAAAGATTCCTCCCCCTCCCAGGTAGAGATGCACCCGGGAGGGACGCGTTGGAATCCAACACAAGAGCAGATAGGGATATTGGAAATGCTGTATAGAGGAGGAATGCGGACTCCGAATGCTCAGCAGATAGAGCAAATCACTGCTCAGCTTGGCAAGTACGGCAAGATTGAAGGCAAGAATGTGTTCTACTGGTTCCAAAATCACAAAGCACGCGAAAGACAGAAGCAGAAACGCAGCACTCTTGGTCTCACGCACTCTCCAAGAACCCCGACTCCTGTAATTACCACCACCGGGGAAGTACTGGAAAGAGAGGAAGACAGTCCATACAAGAGAAAGTGCAGGAGCTGGGCATTTGATTGTTTGGGAGACGATTCTAGTATTATAACTTGTAACAAAGACGTCGTTGAGGGAGATAGAACTCTGGAGCTCTTCCCATTACGCCCAGAAGGCATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

229

Amino Acids

25.94

Weight (kDa)

9.3

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 92 - 151 1e-14 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
AatII GACGTC 1 cut(s) 633
AccII CGCG 2 cut(s) 277, 444
AciI CCGC 1 cut(s) 337
AcvI CACGTG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 630
AfaI GTAC 2 cut(s) 389, 531
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 188, 250, 522
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 2 cut(s) 71, 401
AjnI CCWGG 1 cut(s) 249
AloI GAACNNNNNNTCC 2 cut(s) 487, 519
AluBI AGCT 5 cut(s) 171, 205, 379, 576, 658
AluI AGCT 5 cut(s) 171, 205, 379, 576, 658
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 2 cut(s) 482, 591
AlwNI CAGNNNCTG 1 cut(s) 576
Ama87I CYCGRG 1 cut(s) 265
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 12, 465
Asp700I GAANNNNTTC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 3 cut(s) 266, 267, 523
AsuNHI GCTAGC 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 265
BanII GRGCYC 1 cut(s) 660
BbrPI CACGTG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 660
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 24, 477
BceAI ACGGC 1 cut(s) 406
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 1 cut(s) 251
BcnI CCSGG 3 cut(s) 266, 267, 523
BcoDI GTCTC 2 cut(s) 482, 591
BfaI CTAG 3 cut(s) 195, 206, 606
BfoI RGCGCY 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 678
BisI GCNGC 2 cut(s) 13, 466
BlpI GCTNAGC 2 cut(s) 351, 375
BlsI GCNGC 2 cut(s) 14, 467
BmcAI AGTACT 1 cut(s) 531
Bme1390I CCNGG 4 cut(s) 251, 266, 267, 523
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 4 cut(s) 251, 266, 267, 523
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 4 cut(s) 34, 80, 218, 249
BmtI GCTAGC 1 cut(s) 209
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 80
Bpu1102I GCTNAGC 2 cut(s) 351, 375
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 3 cut(s) 266, 267, 523
BsaAI YACGTR 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 630
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 85, 249, 265, 522
BsaXI ACNNNNNCTCC 6 cut(s) 136, 166, 472, 487, 502, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 250, 522
Bse1I ACTGG 3 cut(s) 50, 425, 537
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 4 cut(s) 85, 249, 265, 522
BseGI GGATG 2 cut(s) 53, 95
BseLI CCNNNNNNNGG 3 cut(s) 188, 250, 522
BseMII CTCAG 3 cut(s) 94, 365, 389
BseNI ACTGG 3 cut(s) 50, 425, 537
BseRI GAGGAG 2 cut(s) 204, 342
BseXI GCAGC 2 cut(s) 24, 477
BseYI CCCAGC 1 cut(s) 576
BsgI GTGCAG 1 cut(s) 589
Bsh1236I CGCG 2 cut(s) 277, 444
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 660
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 266, 522
BslFI GGGAC 2 cut(s) 62, 286
BslI CCNNNNNNNGG 3 cut(s) 188, 250, 522
BsmAI GTCTC 2 cut(s) 482, 591
BsmBI CGTCTC 1 cut(s) 591
BsmFI GGGAC 2 cut(s) 62, 286
BsmI GAATGC 2 cut(s) 339, 352
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 482
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 1 cut(s) 160
Bsp1720I GCTNAGC 2 cut(s) 351, 375
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 3 cut(s) 93, 364, 388
BspFNI CGCG 2 cut(s) 277, 444
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 425
BspOI GCTAGC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 482
BsrI ACTGG 3 cut(s) 50, 425, 537
BssECI CCNNGG 4 cut(s) 85, 249, 265, 522
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 665
BstACI GRCGYC 1 cut(s) 630
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 95, 207, 442
BstDEI CTNAG 3 cut(s) 80, 351, 375
BstF5I GGATG 2 cut(s) 53, 95
BstFNI CGCG 2 cut(s) 277, 444
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 2 cut(s) 482, 591
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 4 cut(s) 90, 361, 390, 678
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 249, 264, 265, 521
BstUI CGCG 2 cut(s) 277, 444
BstV1I GCAGC 2 cut(s) 24, 477
BstV2I GAAGAC 1 cut(s) 552
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 53, 95
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 43, 369
Cac8I GCNNGC 3 cut(s) 95, 207, 442
CaiI CAGNNNCTG 1 cut(s) 576
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 191
Cfr9I CCCGGG 1 cut(s) 265
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 388, 530
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 16, 218, 224, 682
CviJI RGCY 7 cut(s) 84, 171, 192, 205, 379, 576, 658
CviKI_1 RGCY 7 cut(s) 84, 171, 192, 205, 379, 576, 658
CviQI GTAC 2 cut(s) 388, 530
DdeI CTNAG 3 cut(s) 80, 351, 375
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 482
Eco47III AGCGCT 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 658
Eco72I CACGTG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 4 cut(s) 19, 221, 227, 685
FaiI YATR 7 cut(s) 17, 219, 225, 324, 556, 614, 683
FaqI GGGAC 2 cut(s) 62, 286
FatI CATG 4 cut(s) 15, 217, 223, 681
Fnu4HI GCNGC 2 cut(s) 13, 466
FokI GGATG 2 cut(s) 40, 102
FriOI GRGCYC 1 cut(s) 660
Fsp4HI GCNGC 2 cut(s) 13, 466
FspBI CTAG 3 cut(s) 195, 206, 606
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 13, 466
GsaI CCCAGC 1 cut(s) 580
GsuI CTGGAG 1 cut(s) 674
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 192
HapII CCGG 2 cut(s) 266, 522
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 630
Hin1II CATG 4 cut(s) 19, 221, 227, 685
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 6 cut(s) 50, 236, 283, 340, 502, 602
HpaII CCGG 2 cut(s) 266, 522
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 127, 179, 345
Hpy188III TCNNGA 4 cut(s) 68, 166, 218, 653
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 3 cut(s) 13, 395, 671
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 37, 630
HpyCH4V TGCA 5 cut(s) 25, 93, 137, 262, 570
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 361, 390, 678
HpyF3I CTNAG 3 cut(s) 80, 351, 375
HpySE526I ACGT 2 cut(s) 37, 630
Hsp92I GRCGYC 1 cut(s) 630
Hsp92II CATG 4 cut(s) 19, 221, 227, 685
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 665
LmnI GCTCC 4 cut(s) 118, 157, 573, 655
Lsp1109I GCAGC 2 cut(s) 24, 477
LweI GCATC 4 cut(s) 34, 80, 218, 249
MaeI CTAG 3 cut(s) 195, 206, 606
MaeII ACGT 2 cut(s) 37, 630
MaeIII GTNAC 1 cut(s) 620
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 3 cut(s) 241, 557, 652
MhlI GDGCHC 1 cut(s) 660
MluCI AATT 1 cut(s) 510
MluI ACGCGT 1 cut(s) 275
MlyI GAGTC 3 cut(s) 44, 334, 496
MmeI TCCRAC 3 cut(s) 150, 260, 311
MroXI GAANNNNTTC 1 cut(s) 413
MslI CAYNNNNRTG 2 cut(s) 20, 222
MspI CCGG 2 cut(s) 266, 522
MspR9I CCNGG 4 cut(s) 251, 266, 267, 523
Mva1269I GAATGC 2 cut(s) 339, 352
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 2 cut(s) 277, 444
MwoI GCNNNNNNNGC 4 cut(s) 90, 361, 390, 678
NciI CCSGG 3 cut(s) 266, 267, 523
NdeII GATC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 4 cut(s) 19, 221, 227, 685
NlaIV GGNNCC 1 cut(s) 425
PagI TCATGA 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 2 cut(s) 339, 352
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 3 cut(s) 236, 283, 602
PkrI GCNGC 2 cut(s) 14, 467
PleI GAGTC 3 cut(s) 44, 334, 496
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
PpsI GAGTC 3 cut(s) 44, 334, 496
Ppu21I YACGTR 1 cut(s) 38
PsiI TTATAA 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 249
PspCI CACGTG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 576
RsaI GTAC 2 cut(s) 389, 531
RsaNI GTAC 2 cut(s) 388, 530
RseI CAYNNNNRTG 2 cut(s) 20, 222
SacI GAGCTC 1 cut(s) 660
SapI GCTCTTC 1 cut(s) 665
SatI GCNGC 2 cut(s) 13, 466
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 531
SchI GAGTC 3 cut(s) 44, 334, 496
ScrFI CCNGG 4 cut(s) 251, 266, 267, 523
SduI GDGCHC 1 cut(s) 660
SetI ASST 9 cut(s) 24, 40, 173, 207, 255, 381, 578, 633, 660
SfaNI GCATC 4 cut(s) 34, 80, 218, 249
SmaI CCCGGG 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 20, 222
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 510
SsiI CCGC 1 cut(s) 337
SspMI CTAG 3 cut(s) 195, 206, 606
SstI GAGCTC 1 cut(s) 660
StyD4I CCNGG 4 cut(s) 249, 264, 265, 521
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 2 cut(s) 40, 633
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 510
TatI WGTACW 1 cut(s) 529
TfiI GAWTC 3 cut(s) 236, 283, 602
TscAI CASTG 2 cut(s) 50, 376
TseI GCWGC 2 cut(s) 12, 465
TspDTI ATGAA 2 cut(s) 32, 163
TspMI CCCGGG 1 cut(s) 265
TspRI CASTG 2 cut(s) 50, 376
XmaI CCCGGG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 3 cut(s) 195, 206, 606
ZraI GACGTC 1 cut(s) 631
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.