Rw7G006930
WRKY Family

WRKY Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000408
Physical Location & Seq
Forward (+)
5909609 .. 5910448
840 bp
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UTR
Exon/CDS
Intron
Rw7G006930.1

Sequence Viewer

Length: 840 bp
ATGTCCGAGTTATTGAAAGTGCATCAGGAAGTTCTGAAAGCGCAGAAAGAAATGTTTGATATGATGAGAGTGCAGCATGAGGCTGTACATGAGGCAATGCAGAGAATTAGAGCTGATGCTGTGCAAAATGTGCAAGGAGAAACTGCCCCTGCTCCAGCTCCAGCTCTAAGAATAGTATTTTGGGTGCTGTATGACGTTGTTATACAAGTGAAGGTCAAGAATATAATGTGTAAACGCCTCCTTCAAGAATTCAAATCCACGCTCGACTTCTTAAAACCACTGATAGAAGAAATGGCAGAAAGTAACAAACTATTGCATCTTCCAGAGCAGGAACAAGAGAAGTTTATTATTCAAATGAGGGAGGGTGTCGAGCTCATTGACAAGTGCTCCAAGGTTAGCAAGTGGCATAGTTACAAAAAGTATGCATGCACCAACAAACTTCTTAAATTAGATGAATCTCTCCGGGGGCTATTCCATAAAATGAGTATGCAGATTGCAATCCATGTGAAGGAAGGTTTGATTTCGATAAGTAGTATGGAGGCAATGATCAAGAAAATTGAAGAGAGTGGTGTGATACAAAATCAAAGTCAAGTTGTACTCACTAAACCACAACCTCCACTGCATGAAGCTGGATTGGATGTTCTGGATACGCATGGAAGTAAGGATGAGGAGGGAACAGGAGATGATTTAAATGAGAAAGAGGTTGGCGTGAAGCAAATTGGAAGAGATGGTACGAGACAGAATGAAAAAGAGATTGAAGGTTTGAGTGAAGTACCTGAAAATTCATCCCCTAAAACTACATTGGATGTGCAAGGAACAAAGGATAAAATGAGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.71

Weight (kDa)

5.97

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 54 - 184 5.4e-21 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 248, 781
AfaI GTAC 4 cut(s) 87, 597, 733, 774
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 6 cut(s) 16, 245, 253, 353, 560, 758
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AloI GAACNNNNNNTCC 2 cut(s) 624, 656
AluBI AGCT 5 cut(s) 113, 158, 164, 373, 629
AluI AGCT 5 cut(s) 113, 158, 164, 373, 629
Alw21I GWGCWC 2 cut(s) 375, 389
Alw26I GTCTC 1 cut(s) 730
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 2 cut(s) 248, 781
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 464
BanII GRGCYC 1 cut(s) 375
BarI GAAGNNNNNNTAC 2 cut(s) 715, 747
Bbv12I GWGCWC 2 cut(s) 375, 389
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 722
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 730
BfaI CTAG 1 cut(s) 838
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 3 cut(s) 31, 106, 325
BpmI CTGGAG 2 cut(s) 138, 144
BpuMI CCSGG 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 390, 463
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse3DI GCAATG 2 cut(s) 102, 549
Bse8I GATNNNNATC 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 390, 463
BseGI GGATG 4 cut(s) 643, 670, 785, 811
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMI GCAATG 2 cut(s) 102, 549
BseRI GAGGAG 1 cut(s) 683
BseXI GCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 92
BsiHKAI GWGCWC 2 cut(s) 375, 389
BsiSI CCGG 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 730
Bsp1286I GDGCHC 2 cut(s) 375, 389
Bsp1407I TGTACA 1 cut(s) 85
Bsp143I GATC 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 102, 549
BsrGI TGTACA 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 390, 463
BssMI GATC 1 cut(s) 546
BssT1I CCWWGG 1 cut(s) 390
Bst6I CTCTTC 2 cut(s) 555, 718
BstAPI GCANNNNNTGC 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 4 cut(s) 643, 670, 785, 811
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 549
BstMAI GTCTC 1 cut(s) 730
BstMBI GATC 1 cut(s) 546
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 85
BsuI GTATCC 1 cut(s) 640
BtsCI GGATG 4 cut(s) 643, 670, 785, 811
BtsI GCAGTG 1 cut(s) 617
BtsIMutI CAGTG 2 cut(s) 278, 617
Cac8I GCNNGC 1 cut(s) 427
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 4 cut(s) 86, 596, 732, 773
CviAII CATG 6 cut(s) 77, 89, 426, 503, 623, 653
CviJI RGCY 7 cut(s) 83, 113, 158, 164, 373, 469, 629
CviKI_1 RGCY 7 cut(s) 83, 113, 158, 164, 373, 469, 629
CviQI GTAC 4 cut(s) 86, 596, 732, 773
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 548
DpnII GATC 1 cut(s) 546
DraI TTTAAA 1 cut(s) 690
Eam1104I CTCTTC 2 cut(s) 555, 718
EarI CTCTTC 2 cut(s) 555, 718
Ecl136II GAGCTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 6 cut(s) 80, 92, 429, 506, 626, 656
FatI CATG 6 cut(s) 76, 88, 425, 502, 622, 652
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 4 cut(s) 650, 677, 772, 818
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 838
GlaI GCGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 74
GsuI CTGGAG 2 cut(s) 138, 144
HapII CCGG 1 cut(s) 463
HhaI GCGC 1 cut(s) 43
Hin1II CATG 6 cut(s) 80, 92, 429, 506, 626, 656
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 455, 832
HpaII CCGG 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 7, 36
Hpy188III TCNNGA 6 cut(s) 26, 217, 245, 323, 550, 644
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 5 cut(s) 205, 251, 502, 506, 752
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 6 cut(s) 80, 92, 429, 506, 626, 656
HspAI GCGC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 1 cut(s) 546
LmnI GCTCC 3 cut(s) 157, 163, 392
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 3 cut(s) 31, 106, 325
MaeI CTAG 1 cut(s) 838
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 302, 410, 833
MalI GATC 1 cut(s) 548
MboI GATC 1 cut(s) 546
MboII GAAGA 4 cut(s) 299, 311, 572, 735
MhlI GDGCHC 2 cut(s) 375, 389
MluCI AATT 6 cut(s) 105, 248, 446, 555, 717, 781
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 3 cut(s) 272, 444, 689
MspI CCGG 1 cut(s) 463
MspR9I CCNGG 1 cut(s) 464
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 464
NdeII GATC 1 cut(s) 546
NlaIII CATG 6 cut(s) 80, 92, 429, 506, 626, 656
NmuCI GTSAC 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 427
NspI RCATGY 1 cut(s) 429
PaeI GCATGC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 455
PkrI GCNGC 1 cut(s) 75
Psp124BI GAGCTC 1 cut(s) 375
RsaI GTAC 4 cut(s) 87, 597, 733, 774
RsaNI GTAC 4 cut(s) 86, 596, 732, 773
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 272, 444, 689
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 546
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 2 cut(s) 375, 389
SfaNI GCATC 3 cut(s) 31, 106, 325
SmiI ATTTAAAT 1 cut(s) 690
SphI GCATGC 1 cut(s) 429
Sse9I AATT 6 cut(s) 105, 248, 446, 555, 717, 781
SspMI CTAG 1 cut(s) 838
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 390
SwaI ATTTAAAT 1 cut(s) 690
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 264, 369, 524
TasI AATT 6 cut(s) 105, 248, 446, 555, 717, 781
TatI WGTACW 2 cut(s) 85, 595
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 3 cut(s) 272, 444, 689
Tru9I TTAA 3 cut(s) 272, 444, 689
TscAI CASTG 2 cut(s) 285, 624
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 4 cut(s) 468, 639, 759, 774
TspRI CASTG 2 cut(s) 285, 624
XapI RAATTY 2 cut(s) 248, 781
XceI RCATGY 1 cut(s) 429
XspI CTAG 1 cut(s) 838
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.