Rh2BG171500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
15101545 .. 15109107
7563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG171500.1

Sequence Viewer

Length: 807 bp
ATGGCAGTGGAGTTACTTGGAGGAGCAGCATTTAGTCTGCTGTATGACGGGGTTAAGCAAGCGATTGGAAAGACTGGGACTTTCAAATACCTCCTCAGAGATATCAAATCCACGCTAGAGTCTTTGAACAAACTGCACTCCACAGCCATCCGACAAATTGGAGAGTATAACCTGGAATTGGGTCTCCTAAATGACGAAATTGAAGACCTCAGAGAACAAATGGAGGAAGGGGCGAAGCTTGTTTGCAAGTTGTCCAATTTTCGTATGTGGAACTACTGCTGCATCAATTGTTACACTGACCAACTGGTTGACTTGGATAGGTTTCTCAAAAGACTGTTAGAGAACCTCAAATTGCAGCAAACAAGGGATGTGAAAGAGATCTTGGATCTGCTGAGGAAATACCGCATTGAGCTTGATGAATTAAAGGGCATGTTGAAGATGTTACTACAGCAGAGACGAGGCGATGTGATGGAGACCTCGACTTCAACTGCAGGAAGTAGTACAGAGACCATGCCTCAGCAAAGTGAAGGGAACGGCGAGGAACAAGAAAGTGTTTTCAAGGCTTTGACTGAGTCCAACGAGATTGAGGAGGCTCTCACATTTCCAGAAAATTTCAGGCAGACATTCTCACCACCGTTATCGAATCTCAAGTATCTCAGTGTCTCGATTGTACGTCTTCGATGTCCGCAAACAATGGCCAGAGTTTCAGCCTTGACGGACTCTTTGCGTTGGATGGCACCACATGCATGGTTTACATCAACTTACTGGGACTATGATGAGCCTGAAACTTCAGAGGAAGATGAATAA

Protein Analysis

268

Amino Acids

30.88

Weight (kDa)

4.83

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 8 - 140 4.2e-18 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 736
AciI CCGC 2 cut(s) 403, 686
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 502, 672
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 6 cut(s) 85, 127, 203, 436, 486, 559
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 2 cut(s) 238, 412
AluI AGCT 2 cut(s) 238, 412
Alw26I GTCTC 5 cut(s) 188, 448, 467, 500, 667
AlwI GGATC 1 cut(s) 393
AoxI GGCC 1 cut(s) 696
ApeKI GCWGC 3 cut(s) 26, 279, 355
ApoI RAATTY 1 cut(s) 610
ArsI GACNNNNNNTTYG 2 cut(s) 706, 738
AsuHPI GGTGA 1 cut(s) 621
BalI TGGCCA 1 cut(s) 698
BanI GGYRCC 1 cut(s) 736
BbsI GAAGAC 2 cut(s) 210, 668
BbvCI CCTCAGC 2 cut(s) 392, 516
BbvI GCAGC 3 cut(s) 38, 266, 367
BccI CCATC 3 cut(s) 155, 463, 727
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 5 cut(s) 188, 448, 467, 500, 667
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 2 cut(s) 446, 489
BglII AGATCT 1 cut(s) 378
BisI GCNGC 3 cut(s) 27, 280, 356
BlsI GCNGC 3 cut(s) 28, 281, 357
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 2 cut(s) 84, 775
BmsI GCATC 1 cut(s) 291
BmuI ACTGGG 2 cut(s) 84, 775
BpiI GAAGAC 2 cut(s) 210, 668
Bpu10I CCTNAGC 2 cut(s) 392, 516
BpuEI CTTGAG 1 cut(s) 632
BsaI GGTCTC 3 cut(s) 188, 467, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 3 cut(s) 79, 309, 770
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 3 cut(s) 147, 373, 738
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 6 cut(s) 109, 223, 383, 530, 561, 670
BseNI ACTGG 3 cut(s) 79, 309, 770
BseRI GAGGAG 3 cut(s) 36, 83, 602
BseXI GCAGC 3 cut(s) 38, 266, 367
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 1 cut(s) 698
BshNI GGYRCC 1 cut(s) 736
BslFI GGGAC 2 cut(s) 91, 782
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 5 cut(s) 188, 448, 467, 500, 667
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 2 cut(s) 91, 782
BsnI GGCC 1 cut(s) 698
Bso31I GGTCTC 3 cut(s) 188, 467, 500
Bsp143I GATC 2 cut(s) 378, 385
BspACI CCGC 2 cut(s) 403, 686
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 6 cut(s) 108, 222, 384, 529, 562, 669
BspLI GGNNCC 1 cut(s) 738
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 736
BspTNI GGTCTC 3 cut(s) 188, 467, 500
BsrI ACTGG 3 cut(s) 79, 309, 770
BssMI GATC 2 cut(s) 378, 385
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 336, 636
BstAPI GCANNNNNTGC 1 cut(s) 743
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 6 cut(s) 95, 209, 392, 516, 570, 656
BstF5I GGATG 3 cut(s) 147, 373, 738
BstKTI GATC 2 cut(s) 381, 388
BstMAI GTCTC 5 cut(s) 188, 448, 467, 500, 667
BstMBI GATC 2 cut(s) 378, 385
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 2 cut(s) 433, 746
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 2 cut(s) 446, 489
BstV1I GCAGC 3 cut(s) 38, 266, 367
BstV2I GAAGAC 2 cut(s) 210, 668
BstX2I RGATCY 2 cut(s) 378, 385
BstXI CCANNNNNNTGG 1 cut(s) 747
BstYI RGATCY 2 cut(s) 378, 385
BsuRI GGCC 1 cut(s) 698
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 3 cut(s) 147, 373, 738
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 294, 664
Cac8I GCNNGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 501, 671
CviAII CATG 4 cut(s) 430, 511, 743, 747
CviJI RGCY 8 cut(s) 146, 238, 412, 563, 593, 698, 710, 781
CviKI_1 RGCY 8 cut(s) 146, 238, 412, 563, 593, 698, 710, 781
CviQI GTAC 2 cut(s) 501, 671
DdeI CTNAG 6 cut(s) 95, 209, 392, 516, 570, 656
DpnI GATC 2 cut(s) 380, 387
DpnII GATC 2 cut(s) 378, 385
EaeI YGGCCR 1 cut(s) 696
Eco31I GGTCTC 3 cut(s) 188, 467, 500
Eco32I GATATC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 748
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 4 cut(s) 433, 514, 746, 750
FaiI YATR 8 cut(s) 45, 168, 266, 431, 512, 744, 748, 774
FaqI GGGAC 2 cut(s) 91, 782
FatI CATG 4 cut(s) 429, 510, 742, 746
Fnu4HI GCNGC 3 cut(s) 27, 280, 356
FokI GGATG 3 cut(s) 134, 380, 745
Fsp4HI GCNGC 3 cut(s) 27, 280, 356
FspBI CTAG 1 cut(s) 116
GluI GCNGC 3 cut(s) 27, 280, 356
HaeIII GGCC 1 cut(s) 698
Hin1II CATG 4 cut(s) 433, 514, 746, 750
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 4 cut(s) 119, 572, 643, 719
HphI GGTGA 1 cut(s) 621
Hpy166II GTNNAC 2 cut(s) 310, 753
Hpy188I TCNGA 4 cut(s) 98, 152, 212, 793
Hpy188III TCNNGA 2 cut(s) 605, 664
Hpy8I GTNNAC 2 cut(s) 310, 753
HpyAV CCTTC 2 cut(s) 221, 521
HpyCH4III ACNGT 2 cut(s) 336, 636
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 6 cut(s) 136, 246, 282, 355, 491, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 6 cut(s) 95, 209, 392, 516, 570, 656
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 4 cut(s) 433, 514, 746, 750
Kzo9I GATC 2 cut(s) 378, 385
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 3 cut(s) 38, 266, 367
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 3 cut(s) 12, 290, 441
MalI GATC 2 cut(s) 380, 387
MboI GATC 2 cut(s) 378, 385
MboII GAAGA 3 cut(s) 215, 448, 668
MfeI CAATTG 1 cut(s) 286
MflI RGATCY 2 cut(s) 378, 385
MlsI TGGCCA 1 cut(s) 698
MluCI AATT 8 cut(s) 156, 176, 198, 256, 286, 350, 419, 610
MluNI TGGCCA 1 cut(s) 698
MlyI GAGTC 3 cut(s) 128, 581, 713
MmeI TCCRAC 3 cut(s) 175, 600, 710
Mox20I TGGCCA 1 cut(s) 698
Mph1103I ATGCAT 1 cut(s) 748
MscI TGGCCA 1 cut(s) 698
MseI TTAA 2 cut(s) 54, 422
MslI CAYNNNNRTG 1 cut(s) 745
Msp20I TGGCCA 1 cut(s) 698
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 743
NdeII GATC 2 cut(s) 378, 385
NlaIII CATG 4 cut(s) 433, 514, 746, 750
NlaIV GGNNCC 1 cut(s) 738
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 2 cut(s) 433, 746
PfeI GAWTC 1 cut(s) 643
PflFI GACNNNGTC 1 cut(s) 571
PkrI GCNGC 3 cut(s) 28, 281, 357
PleI GAGTC 3 cut(s) 127, 580, 713
PpsI GAGTC 3 cut(s) 127, 580, 713
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 738
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 378, 385
PsyI GACNNNGTC 1 cut(s) 571
RsaI GTAC 2 cut(s) 502, 672
RsaNI GTAC 2 cut(s) 501, 671
RseI CAYNNNNRTG 1 cut(s) 745
SaqAI TTAA 2 cut(s) 54, 422
SatI GCNGC 3 cut(s) 27, 280, 356
Sau3AI GATC 2 cut(s) 378, 385
SchI GAGTC 3 cut(s) 128, 581, 713
ScrFI CCNGG 1 cut(s) 173
SetI ASST 9 cut(s) 93, 174, 210, 240, 323, 348, 414, 479, 676
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 2 cut(s) 446, 489
SmiMI CAYNNNNRTG 1 cut(s) 745
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 8 cut(s) 156, 176, 198, 256, 286, 350, 419, 610
SsiI CCGC 2 cut(s) 403, 686
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 336, 636
TaiI ACGT 1 cut(s) 676
TaqI TCGA 4 cut(s) 479, 641, 665, 679
TasI AATT 8 cut(s) 156, 176, 198, 256, 286, 350, 419, 610
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 2 cut(s) 54, 422
Tru9I TTAA 2 cut(s) 54, 422
TscAI CASTG 3 cut(s) 12, 301, 664
TseI GCWGC 3 cut(s) 26, 279, 355
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 1 cut(s) 731
TspRI CASTG 3 cut(s) 12, 301, 664
Tth111I GACNNNGTC 1 cut(s) 571
XapI RAATTY 1 cut(s) 610
XceI RCATGY 2 cut(s) 433, 746
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.