Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Forward (+)

38005789 .. 38038322

Gene Structure 32534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG319600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGTGGCATCATTAGATGGAGGGACAGGGACTGCTCTAGGAGCAATATTTGGGATGCTACTTGAACTCGTTATAGAAGTGACGGACAAGAATGCGACGTTTAAGCCTCTGCTCCAAGATCTCAAATCCACTTTAGAATCCTTAAAACCGTTTGTCGAGGAGATGGCACAGCATAACAAGGTATTGGATCTCCCAAAGGAGGAACTCAAAAGATTTGCAGTGGAAATGGAGAATGGAGTAAAGCTCGTTTGCAAGTGCTCTAAGGTTCGTTTGTGGGCAAGCTACAAAAAGTACGAATACACCAACAAACTTCTTGGATTGGATGAGTTTTGCCGGAGACAGGCAAGTCTACTGAGAGAGCAGGTAGCAAGGGATGTAAGGGAGACGTCGGCTTCCATTAGGAATGTGAAGGAAGAGATGTTGGTTTTGATAAGTAATACAGAGATGGTGATCAAGCGAATGAAATTTAGCACTGGTGTTGCACAAAAATCCTTTGATAAGGCTCCATCGTCAATCCCTAGATGCTATGAAATAGTGGCTGATGATCAAAGGCGTAAAAATTTTGGGTTTATTAAGCGACGTATCCGACCCATAGCGCGAGGAGCTCCCTTCATAACTTGTTATAAATGCTCATACCCCCTGCAGATACCTGCAGGTTTTCACCTTTCTAGGAGATGGCAGAAACTCAGATGTGGTGCTTGTTCGGCGGTTCTTAAGTTTTCACTCATAATGAAATCTCATGTTGTACCATATGAAGTACAGAGTGCCAAAGAGCCTCCAACAGCTGAGGATGACAGAAACCTGGCTTCAACATCTAAACAATTTGATAGTCAACATGCGGATCCCGATACATATTCTGATGATTTCGTTGATAGACTCTTACACTACAAAAGCACCTCTACCCAAGTAAATTTTAGGGCACATTTAGGCACTCTCTCATCTTTCCTTAAACCAGGGATTCCGACTCTATATGAGGATCTGGCCCCCATATTTCGGCTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

38.01

Weight (kDa)

9.26

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	11 - 139	4.1e-29	Arabidopsis broad-spectrum mildew resistance protein RPW8
Zn_ribbon_12	PF11331	201 - 243	6.4e-17	EDR4 zinc-ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AasI	GACNNNNNNGTC	1 cut(s)	348
AatII	GACGTC	1 cut(s)	392
Acc36I	ACCTGC	3 cut(s)	355, 647, 661
AccI	GTMKAC	1 cut(s)	352
AccII	CGCG	1 cut(s)	601
AciI	CCGC	2 cut(s)	710, 842
AclWI	GGATC	4 cut(s)	198, 839, 852, 987
AcsI	RAATTY	3 cut(s)	467, 562, 913
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	3 cut(s)	296, 750, 762
AfiI	CCNNNNNNNGG	3 cut(s)	202, 343, 996
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	2 cut(s)	68, 813
AjnI	CCWGG	2 cut(s)	804, 955
AluBI	AGCT	4 cut(s)	247, 285, 608, 788
AluI	AGCT	4 cut(s)	247, 285, 608, 788
Alw21I	GWGCWC	2 cut(s)	263, 610
Alw26I	GTCTC	2 cut(s)	334, 380
AlwI	GGATC	4 cut(s)	198, 839, 852, 987
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	984
ApoI	RAATTY	3 cut(s)	467, 562, 913
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	985
AsuHPI	GGTGA	2 cut(s)	463, 656
BaeGI	GKGCMC	1 cut(s)	925
BamHI	GGATCC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	610
Bbv12I	GWGCWC	2 cut(s)	263, 610
BbvCI	CCTCAGC	1 cut(s)	789
BccI	CCATC	5 cut(s)	14, 160, 442, 517, 672
BciT130I	CCWGG	2 cut(s)	806, 957
BciVI	GTATCC	1 cut(s)	596
BclI	TGATCA	2 cut(s)	453, 547
BcoDI	GTCTC	2 cut(s)	334, 380
BfaI	CTAG	3 cut(s)	41, 522, 672
BfmI	CTRYAG	2 cut(s)	644, 654
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	3 cut(s)	355, 647, 661
BfuI	GTATCC	1 cut(s)	596
BglII	AGATCT	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	806, 957
BmgT120I	GGNCC	1 cut(s)	985
BmiI	GGNNCC	3 cut(s)	507, 846, 987
BmrFI	CCNGG	2 cut(s)	806, 957
BmsI	GCATC	3 cut(s)	20, 48, 515
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
Bpu10I	CCTNAGC	1 cut(s)	789
BsaBI	GATNNNNATC	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	956
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 343, 996
Bse1I	ACTGG	1 cut(s)	481
Bse8I	GATNNNNATC	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	806, 957
BseDI	CCNNGG	1 cut(s)	956
BseGI	GGATG	4 cut(s)	63, 331, 382, 799
BseJI	GATNNNNATC	1 cut(s)	452
BseLI	CCNNNNNNNGG	3 cut(s)	202, 343, 996
BseMII	CTCAG	3 cut(s)	347, 703, 780
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	176, 618
BseSI	GKGCMC	1 cut(s)	925
Bsh1236I	CGCG	1 cut(s)	601
BshFI	GGCC	1 cut(s)	986
BsiHKAI	GWGCWC	2 cut(s)	263, 610
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	2 cut(s)	40, 46
BslI	CCNNNNNNNGG	3 cut(s)	202, 343, 996
BsmAI	GTCTC	2 cut(s)	334, 380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	40, 46
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	986
Bsp1286I	GDGCHC	3 cut(s)	263, 610, 925
Bsp143I	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
BspACI	CCGC	2 cut(s)	710, 842
BspANI	GGCC	1 cut(s)	986
BspCNI	CTCAG	3 cut(s)	348, 702, 781
BspFNI	CGCG	1 cut(s)	601
BspLI	GGNNCC	3 cut(s)	507, 846, 987
BspMAI	CTGCAG	2 cut(s)	648, 658
BspMI	ACCTGC	3 cut(s)	355, 647, 661
BspPI	GGATC	4 cut(s)	198, 839, 852, 987
BspTI	CTTAAG	1 cut(s)	716
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	956
BssMI	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
BssNI	GRCGYC	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	806, 957
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	389
BstAFI	CTTAAG	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	4 cut(s)	264, 356, 689, 789
BstF5I	GGATG	4 cut(s)	63, 331, 382, 799
BstFNI	CGCG	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	6 cut(s)	124, 193, 456, 550, 847, 982
BstMAI	GTCTC	2 cut(s)	334, 380
BstMBI	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 605, 707
BstNI	CCWGG	2 cut(s)	806, 957
BstNSI	RCATGY	1 cut(s)	842
BstSCI	CCNGG	2 cut(s)	804, 955
BstSFI	CTRYAG	2 cut(s)	644, 654
BstSLI	GKGCMC	1 cut(s)	925
BstUI	CGCG	1 cut(s)	601
BstX2I	RGATCY	4 cut(s)	121, 190, 844, 979
BstYI	RGATCY	4 cut(s)	121, 190, 844, 979
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	986
BtsCI	GGATG	4 cut(s)	63, 331, 382, 799
BtsI	GCAGTG	2 cut(s)	12, 228
BtsIMutI	CAGTG	3 cut(s)	12, 228, 474
BveI	ACCTGC	3 cut(s)	355, 647, 661
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	985
Csp6I	GTAC	3 cut(s)	295, 749, 761
CviAII	CATG	2 cut(s)	743, 839
CviQI	GTAC	3 cut(s)	295, 749, 761
DdeI	CTNAG	4 cut(s)	264, 356, 689, 789
DpnI	GATC	6 cut(s)	123, 192, 455, 549, 846, 981
DpnII	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
DrdI	GACNNNNNNGTC	1 cut(s)	348
DseDI	GACNNNNNNGTC	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	608
EcoICRI	GAGCTC	1 cut(s)	608
EcoRII	CCWGG	2 cut(s)	804, 955
EcoT38I	GRGCYC	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	2 cut(s)	746, 842
FaqI	GGGAC	2 cut(s)	40, 46
FatI	CATG	2 cut(s)	742, 838
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	2 cut(s)	453, 547
FblI	GTMKAC	1 cut(s)	352
FokI	GGATG	4 cut(s)	70, 338, 389, 806
FriOI	GRGCYC	1 cut(s)	610
FspBI	CTAG	3 cut(s)	41, 522, 672
GlaI	GCGC	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	986
HapII	CCGG	1 cut(s)	337
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	746, 842
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HinfI	GANTC	4 cut(s)	140, 879, 961, 967
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	463, 656
Hpy166II	GTNNAC	2 cut(s)	353, 836
Hpy188I	TCNGA	4 cut(s)	590, 692, 862, 966
Hpy188III	TCNNGA	1 cut(s)	848
Hpy8I	GTNNAC	2 cut(s)	353, 836
Hpy99I	CGWCG	3 cut(s)	103, 394, 585
HpyAV	CCTTC	2 cut(s)	406, 622
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	3 cut(s)	101, 389, 583
HpyCH4V	TGCA	5 cut(s)	221, 255, 485, 646, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 605, 707
HpyF3I	CTNAG	4 cut(s)	264, 356, 689, 789
HpySE526I	ACGT	3 cut(s)	101, 389, 583
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	746, 842
HspAI	GCGC	1 cut(s)	599
Ksp22I	TGATCA	2 cut(s)	453, 547
Kzo9I	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
LmnI	GCTCC	5 cut(s)	44, 120, 511, 605, 613
LweI	GCATC	3 cut(s)	20, 48, 515
MaeI	CTAG	3 cut(s)	41, 522, 672
MaeII	ACGT	3 cut(s)	101, 389, 583
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	6 cut(s)	123, 192, 455, 549, 846, 981
MboI	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	4 cut(s)	121, 190, 844, 979
MhlI	GDGCHC	3 cut(s)	263, 610, 925
MluCI	AATT	4 cut(s)	467, 562, 824, 913
MlyI	GAGTC	2 cut(s)	873, 961
MmeI	TCCRAC	3 cut(s)	613, 806, 989
MnlI	CCTC	9 cut(s)	17, 120, 154, 196, 596, 784, 789, 910, 970
MseI	TTAA	5 cut(s)	105, 146, 576, 717, 951
MspA1I	CMGCKG	1 cut(s)	788
MspCI	CTTAAG	1 cut(s)	716
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	806, 957
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	2 cut(s)	806, 957
MvnI	CGCG	1 cut(s)	601
MwoI	GCNNNNNNNGC	3 cut(s)	44, 605, 707
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
NlaIII	CATG	2 cut(s)	746, 842
NlaIV	GGNNCC	3 cut(s)	507, 846, 987
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	842
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	140, 961
PleI	GAGTC	2 cut(s)	873, 961
PpsI	GAGTC	2 cut(s)	873, 961
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	804, 955
PspGI	CCWGG	2 cut(s)	804, 955
PspN4I	GGNNCC	3 cut(s)	507, 846, 987
PspPI	GGNCC	1 cut(s)	985
PstI	CTGCAG	2 cut(s)	648, 658
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	4 cut(s)	121, 190, 844, 979
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	3 cut(s)	296, 750, 762
RsaNI	GTAC	3 cut(s)	295, 749, 761
SacI	GAGCTC	1 cut(s)	610
SaqAI	TTAA	5 cut(s)	105, 146, 576, 717, 951
Sau3AI	GATC	6 cut(s)	121, 190, 453, 547, 844, 979
Sau96I	GGNCC	1 cut(s)	985
SbfI	CCTGCAGG	1 cut(s)	658
SchI	GAGTC	2 cut(s)	873, 961
ScrFI	CCNGG	2 cut(s)	806, 957
SdaI	CCTGCAGG	1 cut(s)	658
SduI	GDGCHC	3 cut(s)	263, 610, 925
SfaNI	GCATC	3 cut(s)	20, 48, 515
SfcI	CTRYAG	2 cut(s)	644, 654
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse8387I	CCTGCAGG	1 cut(s)	658
Sse9I	AATT	4 cut(s)	467, 562, 824, 913
SsiI	CCGC	2 cut(s)	710, 842
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	3 cut(s)	41, 522, 672
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	804, 955
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	3 cut(s)	104, 392, 586
TaqI	TCGA	1 cut(s)	159
TasI	AATT	4 cut(s)	467, 562, 824, 913
TatI	WGTACW	1 cut(s)	760
TfiI	GAWTC	2 cut(s)	140, 961
Tru1I	TTAA	5 cut(s)	105, 146, 576, 717, 951
Tru9I	TTAA	5 cut(s)	105, 146, 576, 717, 951
TscAI	CASTG	3 cut(s)	12, 228, 481
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	5 cut(s)	479, 546, 604, 749, 771
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	3 cut(s)	12, 228, 481
Vha464I	CTTAAG	1 cut(s)	716
XapI	RAATTY	3 cut(s)	467, 562, 913
XceI	RCATGY	1 cut(s)	842
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	3 cut(s)	41, 522, 672
ZraI	GACGTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.