Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Forward (+)

16487277 .. 16491751

Gene Structure 4475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG173100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGCAGTGGAGTTACTTGGAGGAGCAGTGTTTACACTGCTGTATGATGGGGTTAAGCAAGCAATCGGAAAGACAGGGACTTTCAAATACCTTCTCAAAGACATCAAATCCACACTGGAGTCTTTGAACAAGCTACACGCCACGGCCATCAGACAAATCGGAGAGTATAACCTGGAATTGGGTCTCCCAAATGATGATATAGAAGAGCTCAAAGAGCAAATGGAGGAAGGGGCAAAGCTGGTGGGAAAGTTGTCTGATTTTCGTGTGTGGAACTACTGCTGCTTAAGTTGTTATACCGATCAACTTGTTGATTTGGATAGGTCTCTCAAGAGGCTGTTGGAGAATCTTAAGTTGCAAGAAACTAGAGATGTGAAAGAGATCTTGGATTTGCTGAGGAAATACCGCGTTGAGCTTGATGAGTTGAAGGGAACGTTGCAGATATTACTGCAGCAGAGAGCAGGAGATGTGAAGGAGACCACCTCGAATTCAACTGCAGGAAGCAGTACAGAGACCATGCCTCAGCAAAATGTAGGGAACGGAGAGGAACAAGGAGGGGCAAATCTTCGTGCAGTGTATACGATGCTGTTTAACGTTGTTACAGAAGTGAAGGACAAGACTTTGATGTTCAGACCCCTACTCGGAGATCTCAAGTCCATGCTAGATTCCTTAGAACCACTGATCAAAGAGATAGATCAATACAATAGCGTATTGGTTCTCCCAAAGCCGGAGGTAGAAAAGTTCAGGACACAAATGGACAAGGGTGTGGAGCTCGTTTGCAAGTGCTCCAAGGTTCGTCCGTGGACCAGCTACAAAAAGTACAATTACACAATCCGACTTGTTGGATTGAATGAATCTGTTCGATTACTGTTAAGTAGACTGAGAGAGCAGGTAGCTGGGGAGGTGAGTGAGACATTGGCTTCAATAAGTAACCTAAAGGAGGTAATCAAGCAATATGAAGGGCCTAGTGTCATACAAAATCAACATGAGATTATAGGTTCCTGCAAAGTACCTGAACCTTCATCGCCTACATTGATGCCTGAGATTGAGGGTTCTGATGAAGTGCATCCATTACCAGTGCCTCCTGGAGCAAAACTACCTTCACCAAAGGAGGAAGTTGGGGAAGTGAGCGAGACATTGGCTTCAATAAGTAACCTAAAGGAGGTAGTCAAGCAATATGAAGGGCCTAGTGTCATACAAAATCAACATGAGATTATAGGTTCCTGCAAAGTACCCGAACCTTCATCGCCTACAGTGATGCCTGAGATTGAGGATTCTGTTGAAGTGCATCCATTACCAGTGCCTCCTGGAGCAAAACTACCTTCACCAAAGGTTCTAATTACATCTGAACCGGAGTCCCAGCCAATGAAAGGTCAATGGCAAAAGGGAAATCTTATTGGTCGTGGCACGTTTGGGAATGTTTATGTTGCTTCCAATGGGGACATCAAAGGGGATAATTTGCTCGTTGAGTCATCTGGTGTTGTCAAGATAGCTGACTTTGGAATTGTAAAACATATCATCAAAAATGGGATACCGAACGATAAATGCTCTGATCATGATTTGGCTCGTGGTGGTGACATATGGAGTTTGGGTTGCACTGTTATTGAATTGTTCACTGGAAAACCTCCCTGGAGTGAGTTCGAACAGCTTCAAGCCATGTTTCTAATTGTTCGTAAAGATCCTCCAATTCCAGAAACATTGTCACCTGAGGGTAAGGATTTCCTAACATGCTGCTTGCAGAGAAACCCTGCAGAGAGGCCAACTGCTGCAATGCTTTTAGAACATCCATTCTTAAAGAACTCCCAGCCGCAGGATGTCCCAACTATGACCGGTGCCATTAATCTGGTGAATTTGATGGATAAACACAAAATGACGGAACTCCAATCGTACTTGAAAGAAGACTTGATCGTTGAGATTGAGAAGATCAGGTTCTCCACTGATCCATCAATCCATCACCGCGGGATGTCTCTCGAAAGAGGCAAGGAATTCTCAGGAGGACAAGGATCGTCATTGGGGTACTCGAGTCCGAGTCCCACCGATCATCATGACCAGCAGCAGCAGCCAGTGACGCTCAGCAGGCATGAGATGCAGAAGAGGAGGGACTGGAACACTTTCGGGCAGTACTTGAAGAACCAGAGGCCCCCAGTGCCTCCCTCCCAGTGCAATTACAGCCATGTTCTCGAGTTCCTCAGGTACCTCGACCAGTTCGGGAAGACCAAAGTCCATCTCCAGGGTTGTGTGTTTTACGGCCAGCCGGAGCCACCTGCGCCTTGCACCTGTCCTCTCCGGCAGGCCTGGGGAAGCCTGGATGCTCTCATAGGGAGGCTGAGGGCTGCTTATGAGGAGAACGGTGGGGCCCCTGAGAGCAATCCTTTTGCTAGTGGTGCAATCAGGGGGTACTTGAGGGAGGTCAGGGAGTGTCAGGCCAAGGCTAGAGGGATTCCTTACAATAATAAGAAGAAGAAGCCTGGAAATAGTGATCGTGATTCTTCAACAAGTTCTATCATGCACTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

838

Amino Acids

93.34

Weight (kDa)

5.97

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	8 - 140	8.9e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8	PF05659	184 - 291	3.8e-22	Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase	PF00069	480 - 597	4.3e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	480 - 593	5.8e-11	Protein tyrosine and serine/threonine kinase
ALOG_dom	PF04852	682 - 805	2.4e-62	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2269
Acc36I	ACCTGC	2 cut(s)	877, 2269
Acc65I	GGTACC	1 cut(s)	2190
AccB1I	GGYRCC	2 cut(s)	1829, 2190
AccI	GTMKAC	2 cut(s)	575, 874
AccII	CGCG	2 cut(s)	405, 1956
AciI	CCGC	4 cut(s)	403, 1805, 1954, 1956
AclI	AACGTT	2 cut(s)	431, 591
AclWI	GGATC	3 cut(s)	1670, 1931, 2008
AcoI	YGGCCR	2 cut(s)	144, 2245
AcsI	RAATTY	3 cut(s)	484, 1846, 1982
AfaI	GTAC	9 cut(s)	505, 818, 1008, 1230, 1886, 2015, 2120, 2192, 2396
AfiI	CCNNNNNNNGG	8 cut(s)	178, 638, 724, 937, 1159, 1367, 1807, 2227
AflII	CTTAAG	2 cut(s)	283, 347
AgeI	ACCGGT	1 cut(s)	1826
AjnI	CCWGG	8 cut(s)	171, 1081, 1303, 1625, 2226, 2291, 2301, 2464
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	9 cut(s)	133, 208, 238, 412, 769, 807, 893, 1490, 1645
AluI	AGCT	9 cut(s)	133, 208, 238, 412, 769, 807, 893, 1490, 1645
Alw21I	GWGCWC	3 cut(s)	210, 771, 785
Alw26I	GTCTC	7 cut(s)	188, 327, 467, 503, 902, 1124, 1968
AlwI	GGATC	3 cut(s)	1670, 1931, 2008
Ama87I	CYCGRG	2 cut(s)	2017, 2177
AoxI	GGCC	9 cut(s)	144, 959, 1181, 1754, 2135, 2245, 2289, 2352, 2421
ApaI	GGGCCC	1 cut(s)	2356
ApeKI	GCWGC	8 cut(s)	279, 448, 1728, 1763, 2050, 2053, 2056, 2330
ApoI	RAATTY	3 cut(s)	484, 1846, 1982
AseI	ATTAAT	1 cut(s)	1836
AsiGI	ACCGGT	1 cut(s)	1826
Asp700I	GAANNNNTTC	3 cut(s)	855, 1644, 2108
Asp718I	GGTACC	1 cut(s)	2190
AspLEI	GCGC	1 cut(s)	2266
AspS9I	GGNCC	6 cut(s)	801, 959, 1181, 2136, 2352, 2353
AsuHPI	GGTGA	7 cut(s)	913, 1092, 1314, 1583, 1692, 1855, 1943
AsuII	TTCGAA	1 cut(s)	1638
AvaI	CYCGRG	2 cut(s)	2017, 2177
AvaII	GGWCC	1 cut(s)	801
AxyI	CCTNAGG	2 cut(s)	1704, 2186
BaeGI	GKGCMC	1 cut(s)	2356
BaeI	ACNNNNGTAYC	2 cut(s)	2005, 2038
BanI	GGYRCC	2 cut(s)	1829, 2190
BanII	GRGCYC	3 cut(s)	210, 771, 2356
BauI	CACGAG	1 cut(s)	1563
BbsI	GAAGAC	2 cut(s)	1902, 2216
Bbv12I	GWGCWC	3 cut(s)	210, 771, 785
BbvCI	CCTCAGC	3 cut(s)	392, 519, 2324
BbvI	GCAGC	8 cut(s)	266, 460, 1715, 1750, 2062, 2065, 2068, 2317
BccI	CCATC	6 cut(s)	41, 155, 1846, 1948, 1956, 2229
BceAI	ACGGC	2 cut(s)	159, 2260
BciT130I	CCWGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
BciVI	GTATCC	1 cut(s)	1521
BclI	TGATCA	2 cut(s)	678, 1549
BcoDI	GTCTC	7 cut(s)	188, 327, 467, 503, 902, 1124, 1968
BfaI	CTAG	6 cut(s)	363, 659, 963, 1185, 2376, 2430
BfmI	CTRYAG	4 cut(s)	446, 492, 1248, 1746
BfrI	CTTAAG	2 cut(s)	283, 347
BfuAI	ACCTGC	2 cut(s)	877, 2269
BfuI	GTATCC	1 cut(s)	1521
BglII	AGATCT	2 cut(s)	378, 643
BisI	GCNGC	9 cut(s)	280, 449, 1729, 1764, 1805, 2051, 2054, 2057, 2331
BlpI	GCTNAGC	1 cut(s)	2069
BlsI	GCNGC	9 cut(s)	281, 450, 1730, 1765, 1806, 2052, 2055, 2058, 2332
BmcAI	AGTACT	1 cut(s)	2120
Bme1390I	CCNGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
Bme18I	GGWCC	1 cut(s)	801
BmeT110I	CYCGRG	2 cut(s)	2017, 2177
BmgT120I	GGNCC	6 cut(s)	801, 959, 1181, 2136, 2352, 2353
BmiI	GGNNCC	9 cut(s)	997, 1219, 1831, 2138, 2192, 2256, 2353, 2354, 2355
BmrFI	CCNGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
BmrI	ACTGGG	2 cut(s)	2135, 2149
BmsI	GCATC	7 cut(s)	570, 1023, 1072, 1245, 1294, 2073, 2296
BmuI	ACTGGG	2 cut(s)	2135, 2149
BoxI	GACNNNNGTC	1 cut(s)	2216
BpiI	GAAGAC	2 cut(s)	1902, 2216
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	5 cut(s)	137, 1104, 1326, 1648, 2210
Bpu10I	CCTNAGC	3 cut(s)	392, 519, 2324
Bpu1102I	GCTNAGC	1 cut(s)	2069
Bpu14I	TTCGAA	1 cut(s)	1638
BpuEI	CTTGAG	3 cut(s)	311, 632, 2419
BsaI	GGTCTC	4 cut(s)	188, 327, 467, 503
BsaJI	CCNNGG	8 cut(s)	141, 786, 797, 1625, 1954, 2227, 2292, 2424
BsaWI	WCCGGW	2 cut(s)	1348, 1826
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 1573, 1603
Bsc4I	CCNNNNNNNGG	8 cut(s)	178, 638, 724, 937, 1159, 1367, 1807, 2227
Bse118I	RCCGGY	1 cut(s)	1826
Bse1I	ACTGG	9 cut(s)	120, 1073, 1295, 1618, 2060, 2105, 2141, 2155, 2200
Bse21I	CCTNAGG	2 cut(s)	1704, 2186
Bse3DI	GCAATG	1 cut(s)	1773
BseBI	CCWGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
BseDI	CCNNGG	8 cut(s)	141, 786, 797, 1625, 1954, 2227, 2292, 2424
BseGI	GGATG	6 cut(s)	1063, 1285, 1780, 1816, 1965, 2311
BseLI	CCNNNNNNNGG	8 cut(s)	178, 638, 724, 937, 1159, 1367, 1807, 2227
BseMI	GCAATG	1 cut(s)	1773
BseNI	ACTGG	9 cut(s)	120, 1073, 1295, 1618, 2060, 2105, 2141, 2155, 2200
BseRI	GAGGAG	3 cut(s)	36, 2107, 2354
BseSI	GKGCMC	1 cut(s)	2356
BseXI	GCAGC	8 cut(s)	266, 460, 1715, 1750, 2062, 2065, 2068, 2317
BseYI	CCCAGC	3 cut(s)	893, 1356, 1800
BsgI	GTGCAG	1 cut(s)	588
Bsh1236I	CGCG	2 cut(s)	405, 1956
BshFI	GGCC	9 cut(s)	146, 961, 1183, 1756, 2137, 2247, 2291, 2354, 2423
BshNI	GGYRCC	2 cut(s)	1829, 2190
BshTI	ACCGGT	1 cut(s)	1826
BsiHKAI	GWGCWC	3 cut(s)	210, 771, 785
BsiHKCI	CYCGRG	2 cut(s)	2017, 2177
BsiSI	CCGG	5 cut(s)	725, 1349, 1827, 2252, 2284
BslFI	GGGAC	6 cut(s)	91, 1339, 1451, 1799, 2013, 2111
BslI	CCNNNNNNNGG	8 cut(s)	178, 638, 724, 937, 1159, 1367, 1807, 2227
BsmAI	GTCTC	7 cut(s)	188, 327, 467, 503, 902, 1124, 1968
BsmFI	GGGAC	6 cut(s)	91, 1339, 1451, 1799, 2013, 2111
BsnI	GGCC	9 cut(s)	146, 961, 1183, 1756, 2137, 2247, 2291, 2354, 2423
Bso31I	GGTCTC	4 cut(s)	188, 327, 467, 503
BsoBI	CYCGRG	2 cut(s)	2017, 2177
Bsp119I	TTCGAA	1 cut(s)	1638
Bsp120I	GGGCCC	1 cut(s)	2352
Bsp1286I	GDGCHC	4 cut(s)	210, 771, 785, 2356
Bsp1720I	GCTNAGC	1 cut(s)	2069
BspACI	CCGC	4 cut(s)	403, 1805, 1954, 1956
BspANI	GGCC	9 cut(s)	146, 961, 1183, 1756, 2137, 2247, 2291, 2354, 2423
BspFNI	CGCG	2 cut(s)	405, 1956
BspHI	TCATGA	2 cut(s)	1552, 2041
BspLI	GGNNCC	9 cut(s)	997, 1219, 1831, 2138, 2192, 2256, 2353, 2354, 2355
BspMAI	CTGCAG	3 cut(s)	450, 496, 1750
BspMI	ACCTGC	2 cut(s)	877, 2269
BspPI	GGATC	3 cut(s)	1670, 1931, 2008
BspQI	GCTCTTC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	1638
BspT107I	GGYRCC	2 cut(s)	1829, 2190
BspTI	CTTAAG	2 cut(s)	283, 347
BspTNI	GGTCTC	4 cut(s)	188, 327, 467, 503
BsrDI	GCAATG	1 cut(s)	1773
BsrFI	RCCGGY	1 cut(s)	1826
BsrI	ACTGG	9 cut(s)	120, 1073, 1295, 1618, 2060, 2105, 2141, 2155, 2200
BssAI	RCCGGY	1 cut(s)	1826
BssECI	CCNNGG	8 cut(s)	141, 786, 797, 1625, 1954, 2227, 2292, 2424
BssNAI	GTATAC	1 cut(s)	576
BssSI	CACGAG	1 cut(s)	1563
BssT1I	CCWWGG	2 cut(s)	786, 2424
Bst1107I	GTATAC	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	1563
Bst2UI	CCWGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
Bst4CI	ACNGT	4 cut(s)	867, 1252, 1597, 2348
Bst6I	CTCTTC	2 cut(s)	198, 2084
BstAFI	CTTAAG	2 cut(s)	283, 347
BstAPI	GCANNNNNTGC	1 cut(s)	2083
BstBI	TTCGAA	1 cut(s)	1638
BstC8I	GCNNGC	5 cut(s)	60, 1733, 2075, 2249, 2289
BstDSI	CCRYGG	3 cut(s)	141, 797, 1954
BstENI	CCTNNNNNAGG	2 cut(s)	935, 1157
BstF5I	GGATG	6 cut(s)	1063, 1285, 1780, 1816, 1965, 2311
BstFNI	CGCG	2 cut(s)	405, 1956
BstHHI	GCGC	1 cut(s)	2266
BstMAI	GTCTC	7 cut(s)	188, 327, 467, 503, 902, 1124, 1968
BstMWI	GCNNNNNNNGC	9 cut(s)	214, 2056, 2065, 2074, 2083, 2143, 2166, 2263, 2381
BstNI	CCWGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
BstNSI	RCATGY	1 cut(s)	1728
BstPAI	GACNNNNGTC	1 cut(s)	2216
BstSCI	CCNGG	8 cut(s)	171, 1081, 1303, 1625, 2226, 2291, 2301, 2464
BstSFI	CTRYAG	4 cut(s)	446, 492, 1248, 1746
BstSLI	GKGCMC	1 cut(s)	2356
BstUI	CGCG	2 cut(s)	405, 1956
BstV1I	GCAGC	8 cut(s)	266, 460, 1715, 1750, 2062, 2065, 2068, 2317
BstV2I	GAAGAC	2 cut(s)	1902, 2216
BstX2I	RGATCY	3 cut(s)	378, 643, 1675
BstXI	CCANNNNNNTGG	1 cut(s)	1840
BstYI	RGATCY	3 cut(s)	378, 643, 1675
BstZ17I	GTATAC	1 cut(s)	576
Bsu36I	CCTNAGG	2 cut(s)	1704, 2186
BsuI	GTATCC	1 cut(s)	1521
BsuRI	GGCC	9 cut(s)	146, 961, 1183, 1756, 2137, 2247, 2291, 2354, 2423
BtgI	CCRYGG	3 cut(s)	141, 797, 1954
BtgZI	GCGATG	2 cut(s)	1005, 1227
BtsCI	GGATG	6 cut(s)	1063, 1285, 1780, 1816, 1965, 2311
BtsI	GCAGTG	4 cut(s)	12, 33, 35, 576
BveI	ACCTGC	2 cut(s)	877, 2269
Cac8I	GCNNGC	5 cut(s)	60, 1733, 2075, 2249, 2289
CciI	TCATGA	2 cut(s)	1552, 2041
CfoI	GCGC	1 cut(s)	2266
Cfr10I	RCCGGY	1 cut(s)	1826
Cfr13I	GGNCC	6 cut(s)	801, 959, 1181, 2136, 2352, 2353
Cfr42I	CCGCGG	1 cut(s)	1957
CseI	GACGC	1 cut(s)	2074
Csp6I	GTAC	9 cut(s)	504, 817, 1007, 1229, 1885, 2014, 2119, 2191, 2395
CspAI	ACCGGT	1 cut(s)	1826
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviQI	GTAC	9 cut(s)	504, 817, 1007, 1229, 1885, 2014, 2119, 2191, 2395
EaeI	YGGCCR	2 cut(s)	144, 2245
Eam1104I	CTCTTC	2 cut(s)	198, 2084
EarI	CTCTTC	2 cut(s)	198, 2084
Ecl136II	GAGCTC	2 cut(s)	208, 769
Eco130I	CCWWGG	2 cut(s)	786, 2424
Eco147I	AGGCCT	1 cut(s)	2291
Eco24I	GRGCYC	3 cut(s)	210, 771, 2356
Eco31I	GGTCTC	4 cut(s)	188, 327, 467, 503
Eco47I	GGWCC	1 cut(s)	801
Eco53kI	GAGCTC	2 cut(s)	208, 769
Eco81I	CCTNAGG	2 cut(s)	1704, 2186
Eco88I	CYCGRG	2 cut(s)	2017, 2177
EcoICRI	GAGCTC	2 cut(s)	208, 769
EcoNI	CCTNNNNNAGG	2 cut(s)	935, 1157
EcoO109I	RGGNCCY	5 cut(s)	959, 1181, 2136, 2352, 2353
EcoRI	GAATTC	2 cut(s)	484, 1982
EcoRII	CCWGG	8 cut(s)	171, 1081, 1303, 1625, 2226, 2291, 2301, 2464
EcoT14I	CCWWGG	2 cut(s)	786, 2424
EcoT38I	GRGCYC	3 cut(s)	210, 771, 2356
ErhI	CCWWGG	2 cut(s)	786, 2424
FaqI	GGGAC	6 cut(s)	91, 1339, 1451, 1799, 2013, 2111
FauI	CCCGC	1 cut(s)	1949
FauNDI	CATATG	1 cut(s)	1577
FbaI	TGATCA	2 cut(s)	678, 1549
FblI	GTMKAC	2 cut(s)	575, 874
Fnu4HI	GCNGC	9 cut(s)	280, 449, 1729, 1764, 1805, 2051, 2054, 2057, 2331
FokI	GGATG	6 cut(s)	1050, 1272, 1767, 1823, 1972, 2318
FriOI	GRGCYC	3 cut(s)	210, 771, 2356
Fsp4HI	GCNGC	9 cut(s)	280, 449, 1729, 1764, 1805, 2051, 2054, 2057, 2331
FspBI	CTAG	6 cut(s)	363, 659, 963, 1185, 2376, 2430
GlaI	GCGC	1 cut(s)	2265
GluI	GCNGC	9 cut(s)	280, 449, 1729, 1764, 1805, 2051, 2054, 2057, 2331
GsaI	CCCAGC	3 cut(s)	897, 1360, 1804
GsuI	CTGGAG	5 cut(s)	137, 1104, 1326, 1648, 2210
HaeIII	GGCC	9 cut(s)	146, 961, 1183, 1756, 2137, 2247, 2291, 2354, 2423
HapII	CCGG	5 cut(s)	725, 1349, 1827, 2252, 2284
HgaI	GACGC	1 cut(s)	2074
HhaI	GCGC	1 cut(s)	2266
Hin6I	GCGC	1 cut(s)	2264
HinP1I	GCGC	1 cut(s)	2264
HpaII	CCGG	5 cut(s)	725, 1349, 1827, 2252, 2284
HphI	GGTGA	7 cut(s)	913, 1092, 1314, 1583, 1692, 1855, 1943
Hpy166II	GTNNAC	5 cut(s)	33, 576, 801, 875, 1611
Hpy8I	GTNNAC	5 cut(s)	33, 576, 801, 875, 1611
HpyCH4III	ACNGT	4 cut(s)	867, 1252, 1597, 2348
HpyCH4IV	ACGT	3 cut(s)	431, 591, 1406
HpyF10VI	GCNNNNNNNGC	9 cut(s)	214, 2056, 2065, 2074, 2083, 2143, 2166, 2263, 2381
HpySE526I	ACGT	3 cut(s)	431, 591, 1406
HspAI	GCGC	1 cut(s)	2264
KpnI	GGTACC	1 cut(s)	2194
Ksp22I	TGATCA	2 cut(s)	678, 1549
KspI	CCGCGG	1 cut(s)	1957
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	6 cut(s)	23, 766, 788, 1085, 1307, 2254
Lsp1109I	GCAGC	8 cut(s)	266, 460, 1715, 1750, 2062, 2065, 2068, 2317
LweI	GCATC	7 cut(s)	570, 1023, 1072, 1245, 1294, 2073, 2296
MaeI	CTAG	6 cut(s)	363, 659, 963, 1185, 2376, 2430
MaeII	ACGT	3 cut(s)	431, 591, 1406
MaeIII	GTNAC	7 cut(s)	12, 595, 926, 1148, 1571, 1698, 2062
MflI	RGATCY	3 cut(s)	378, 643, 1675
MhlI	GDGCHC	4 cut(s)	210, 771, 785, 2356
MlyI	GAGTC	5 cut(s)	128, 1361, 1475, 2029, 2035
MmeI	TCCRAC	3 cut(s)	318, 820, 856
MroXI	GAANNNNTTC	3 cut(s)	855, 1644, 2108
MseI	TTAA	7 cut(s)	54, 284, 348, 588, 869, 1790, 1836
MspA1I	CMGCKG	1 cut(s)	1956
MspCI	CTTAAG	2 cut(s)	283, 347
MspI	CCGG	5 cut(s)	725, 1349, 1827, 2252, 2284
MspR9I	CCNGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
MvaI	CCWGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
MvnI	CGCG	2 cut(s)	405, 1956
MwoI	GCNNNNNNNGC	9 cut(s)	214, 2056, 2065, 2074, 2083, 2143, 2166, 2263, 2381
NdeI	CATATG	1 cut(s)	1577
NlaIV	GGNNCC	9 cut(s)	997, 1219, 1831, 2138, 2192, 2256, 2353, 2354, 2355
NmuCI	GTSAC	3 cut(s)	1571, 1698, 2062
NspI	RCATGY	1 cut(s)	1728
NspV	TTCGAA	1 cut(s)	1638
PaeR7I	CTCGAG	2 cut(s)	2017, 2177
PagI	TCATGA	2 cut(s)	1552, 2041
PaqCI	CACCTGC	1 cut(s)	2269
PceI	AGGCCT	1 cut(s)	2291
PciSI	GCTCTTC	1 cut(s)	198
PdmI	GAANNNNTTC	3 cut(s)	855, 1644, 2108
PfeI	GAWTC	6 cut(s)	343, 662, 851, 1271, 2437, 2483
PfoI	TCCNGGA	2 cut(s)	1081, 1303
PinAI	ACCGGT	1 cut(s)	1826
PkrI	GCNGC	9 cut(s)	281, 450, 1730, 1765, 1806, 2052, 2055, 2058, 2332
PleI	GAGTC	5 cut(s)	127, 1360, 1474, 2028, 2034
PpsI	GAGTC	5 cut(s)	127, 1360, 1474, 2028, 2034
PshAI	GACNNNNGTC	1 cut(s)	2216
PshBI	ATTAAT	1 cut(s)	1836
Psp124BI	GAGCTC	2 cut(s)	210, 771
Psp1406I	AACGTT	2 cut(s)	431, 591
Psp6I	CCWGG	8 cut(s)	171, 1081, 1303, 1625, 2226, 2291, 2301, 2464
PspFI	CCCAGC	3 cut(s)	893, 1356, 1800
PspGI	CCWGG	8 cut(s)	171, 1081, 1303, 1625, 2226, 2291, 2301, 2464
PspN4I	GGNNCC	9 cut(s)	997, 1219, 1831, 2138, 2192, 2256, 2353, 2354, 2355
PspOMI	GGGCCC	1 cut(s)	2352
PspPI	GGNCC	6 cut(s)	801, 959, 1181, 2136, 2352, 2353
PspXI	VCTCGAGB	1 cut(s)	2017
PstI	CTGCAG	3 cut(s)	450, 496, 1750
PsuI	RGATCY	3 cut(s)	378, 643, 1675
RsaI	GTAC	9 cut(s)	505, 818, 1008, 1230, 1886, 2015, 2120, 2192, 2396
RsaNI	GTAC	9 cut(s)	504, 817, 1007, 1229, 1885, 2014, 2119, 2191, 2395
SacI	GAGCTC	2 cut(s)	210, 771
SacII	CCGCGG	1 cut(s)	1957
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	7 cut(s)	54, 284, 348, 588, 869, 1790, 1836
SatI	GCNGC	9 cut(s)	280, 449, 1729, 1764, 1805, 2051, 2054, 2057, 2331
Sau96I	GGNCC	6 cut(s)	801, 959, 1181, 2136, 2352, 2353
ScaI	AGTACT	1 cut(s)	2120
SchI	GAGTC	5 cut(s)	128, 1361, 1475, 2029, 2035
ScrFI	CCNGG	8 cut(s)	173, 1083, 1305, 1627, 2228, 2293, 2303, 2466
SduI	GDGCHC	4 cut(s)	210, 771, 785, 2356
SfaNI	GCATC	7 cut(s)	570, 1023, 1072, 1245, 1294, 2073, 2296
SfcI	CTRYAG	4 cut(s)	446, 492, 1248, 1746
Sfr274I	CTCGAG	2 cut(s)	2017, 2177
Sfr303I	CCGCGG	1 cut(s)	1957
SfuI	TTCGAA	1 cut(s)	1638
SgrBI	CCGCGG	1 cut(s)	1957
SinI	GGWCC	1 cut(s)	801
SlaI	CTCGAG	2 cut(s)	2017, 2177
SmlI	CTYRAG	7 cut(s)	283, 326, 347, 647, 2017, 2177, 2398
SmoI	CTYRAG	7 cut(s)	283, 326, 347, 647, 2017, 2177, 2398
SseBI	AGGCCT	1 cut(s)	2291
SsiI	CCGC	4 cut(s)	403, 1805, 1954, 1956
SspMI	CTAG	6 cut(s)	363, 659, 963, 1185, 2376, 2430
SstI	GAGCTC	2 cut(s)	210, 771
StuI	AGGCCT	1 cut(s)	2291
StyD4I	CCNGG	8 cut(s)	171, 1081, 1303, 1625, 2226, 2291, 2301, 2464
StyI	CCWWGG	2 cut(s)	786, 2424
TaaI	ACNGT	4 cut(s)	867, 1252, 1597, 2348
TaiI	ACGT	3 cut(s)	434, 594, 1409
TaqI	TCGA	7 cut(s)	482, 859, 1638, 1968, 2018, 2178, 2196
TatI	WGTACW	3 cut(s)	503, 816, 2118
TauI	GCSGC	1 cut(s)	1807
TfiI	GAWTC	6 cut(s)	343, 662, 851, 1271, 2437, 2483
Tru1I	TTAA	7 cut(s)	54, 284, 348, 588, 869, 1790, 1836
Tru9I	TTAA	7 cut(s)	54, 284, 348, 588, 869, 1790, 1836
TseFI	GTSAC	3 cut(s)	1571, 1698, 2062
TseI	GCWGC	8 cut(s)	279, 448, 1728, 1763, 2050, 2053, 2056, 2330
Tsp45I	GTSAC	3 cut(s)	1571, 1698, 2062
TspDTI	ATGAA	7 cut(s)	864, 969, 1008, 1071, 1191, 1230, 1379
TspGWI	ACGGA	3 cut(s)	552, 786, 1886
Vha464I	CTTAAG	2 cut(s)	283, 347
VpaK11BI	GGWCC	1 cut(s)	801
VspI	ATTAAT	1 cut(s)	1836
XagI	CCTNNNNNAGG	2 cut(s)	935, 1157
XapI	RAATTY	3 cut(s)	484, 1846, 1982
XceI	RCATGY	1 cut(s)	1728
XhoI	CTCGAG	2 cut(s)	2017, 2177
XmiI	GTMKAC	2 cut(s)	575, 874
XmnI	GAANNNNTTC	3 cut(s)	855, 1644, 2108
XspI	CTAG	6 cut(s)	363, 659, 963, 1185, 2376, 2430
ZrmI	AGTACT	1 cut(s)	2120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.