Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Forward (+)

32069591 .. 32070678

Gene Structure 1088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTGCAGGAGATAAGGGACGTGAAGGAGATATTGGATCTGTCGAGGAAAAGCCGCAAGGAGCTTGAAGAAGTGAAGGAGGCACAGTTGAGTATGCACAAGCCTCAACTTCGGCTGCTGCTGCGAGGGAGTGCTATTGAGATGGTGCCGAATCAAAATGAAGGGAATGGTGGCATTCAAGGTGAAATCATTGGAAATTGCTTTTTTTCTAATTTGGGTGGTCTAATGATTATGGCGGTGGCATCAATAGATGGAGGGACGGGGACTGCTCTAGGAGCAATATTTGGGATGCTACTTGAACTCGTTATAGAAGTGAAGGACAAGAATGTGATGTTTAAGCCTCTGCTCCAAGATCTCAAATCCACTTTAGAATCCTTAAAACCATTTGTCGAGGAGATGGCACAGCATAACAAGGTATTGCATCTCCCACGGGAGGAACTCAAAAGATTTGCGGTGGAAATGGAGAATGGAGTAAAGCTCGTTTGCAAGTGCTCTAAGGTTCGTTTGTGGGCAAGCTACAAAAAGTACGAATACACCAACAAACTTCTTGGATTGGATGAGTTTTGCCGGAGACAGCAAGTCTGCGAGAGAGCAGGTAGCAAGGGATGTAAGGGAGACGTACGCTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

23.73

Weight (kDa)

8.69

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	88 - 190	9.8e-29	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	3 cut(s)	55, 236, 452
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	527, 621
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	68, 179, 299
AhdI	GACNNNNNGTC	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	3 cut(s)	64, 478, 516
AluI	AGCT	3 cut(s)	64, 478, 516
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	2 cut(s)	565, 609
AlwI	GGATC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	115, 118, 121
AsuHPI	GGTGA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	102, 105, 108
BccI	CCATC	3 cut(s)	136, 245, 391
BcoDI	GTCTC	2 cut(s)	565, 609
BfaI	CTAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	4 cut(s)	55, 116, 119, 122
BlsI	GCNGC	4 cut(s)	56, 117, 120, 123
BmeRI	GACNNNNNGTC	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	3 cut(s)	251, 279, 430
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BsaJI	CCNNGG	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	3 cut(s)	294, 562, 611
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	102, 105, 108
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	568
BsiWI	CGTACG	1 cut(s)	619
BslFI	GGGAC	3 cut(s)	32, 271, 277
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	565, 609
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	3 cut(s)	32, 271, 277
BsmI	GAATGC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	37, 352
BspACI	CCGC	3 cut(s)	55, 236, 452
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	37, 352
Bst4CI	ACNGT	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	1 cut(s)	428
BstF5I	GGATG	3 cut(s)	294, 562, 611
BstKTI	GATC	2 cut(s)	40, 355
BstMAI	GTCTC	2 cut(s)	565, 609
BstMBI	GATC	2 cut(s)	37, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 275
BstV1I	GCAGC	3 cut(s)	102, 105, 108
BstX2I	RGATCY	2 cut(s)	37, 352
BstYI	RGATCY	2 cut(s)	37, 352
BtgI	CCRYGG	1 cut(s)	428
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	294, 562, 611
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	526, 620
CviJI	RGCY	7 cut(s)	54, 64, 103, 115, 340, 478, 516
CviKI_1	RGCY	7 cut(s)	54, 64, 103, 115, 340, 478, 516
CviQI	GTAC	2 cut(s)	526, 620
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	2 cut(s)	39, 354
DpnII	GATC	2 cut(s)	37, 352
DriI	GACNNNNNGTC	1 cut(s)	578
Eam1105I	GACNNNNNGTC	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	609
FaiI	YATR	4 cut(s)	95, 233, 308, 408
FaqI	GGGAC	3 cut(s)	32, 271, 277
Fnu4HI	GCNGC	4 cut(s)	55, 116, 119, 122
FokI	GGATG	3 cut(s)	301, 569, 618
Fsp4HI	GCNGC	4 cut(s)	55, 116, 119, 122
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	4 cut(s)	55, 116, 119, 122
HapII	CCGG	1 cut(s)	568
HinfI	GANTC	2 cut(s)	151, 371
HpaII	CCGG	1 cut(s)	568
HphI	GGTGA	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	19, 70, 155, 310
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	2 cut(s)	21, 618
HpyCH4V	TGCA	4 cut(s)	7, 97, 421, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 275
HpyF3I	CTNAG	1 cut(s)	495
HpySE526I	ACGT	2 cut(s)	21, 618
Kzo9I	GATC	2 cut(s)	37, 352
LmnI	GCTCC	3 cut(s)	61, 275, 351
LpnPI	CCDG	2 cut(s)	579, 581
Lsp1109I	GCAGC	3 cut(s)	102, 105, 108
LweI	GCATC	3 cut(s)	251, 279, 430
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	2 cut(s)	21, 618
MalI	GATC	2 cut(s)	39, 354
MboI	GATC	2 cut(s)	37, 352
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	2 cut(s)	37, 352
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	2 cut(s)	196, 211
MnlI	CCTC	8 cut(s)	39, 73, 114, 119, 248, 351, 385, 427
MseI	TTAA	2 cut(s)	336, 377
MspI	CCGG	1 cut(s)	568
Mva1269I	GAATGC	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	121, 275
NdeII	GATC	2 cut(s)	37, 352
NlaIV	GGNNCC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	151, 371
Pfl23II	CGTACG	1 cut(s)	619
PkrI	GCNGC	4 cut(s)	56, 117, 120, 123
PspLI	CGTACG	1 cut(s)	619
PspN4I	GGNNCC	1 cut(s)	147
PsuI	RGATCY	2 cut(s)	37, 352
RsaI	GTAC	2 cut(s)	527, 621
RsaNI	GTAC	2 cut(s)	526, 620
SaqAI	TTAA	2 cut(s)	336, 377
SatI	GCNGC	4 cut(s)	55, 116, 119, 122
Sau3AI	GATC	2 cut(s)	37, 352
SduI	GDGCHC	1 cut(s)	494
SetI	ASST	9 cut(s)	24, 66, 184, 417, 480, 501, 518, 598, 621
SfaNI	GCATC	3 cut(s)	251, 279, 430
Sse9I	AATT	2 cut(s)	196, 211
SsiI	CCGC	3 cut(s)	55, 236, 452
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	2 cut(s)	24, 621
TaqI	TCGA	2 cut(s)	44, 390
TasI	AATT	2 cut(s)	196, 211
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	151, 371
Tru1I	TTAA	2 cut(s)	336, 377
Tru9I	TTAA	2 cut(s)	336, 377
TseI	GCWGC	3 cut(s)	115, 118, 121
TspDTI	ATGAA	1 cut(s)	174
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.