RLG00000002334

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000408
Physical Location & Seq
Forward (+)
32307507 .. 32308109
603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002334

Sequence Viewer

Length: 603 bp
ATGGTGATCAAGCGAATGAAATTTAGCACTGGTGTTGCACAAAAATCCTTTGATAAGGCTCGATCGTCAATCCCTGAATGCTATGAAACAGTGGCTGATGATCAAAGGCGTAAAAATTTTGAGTTTAAGCGACATATCCGACCCATAGCTGGAGGAGCTCCCTTCATAACTTGTTATAAATGCCCATACCCCCTGCAGATACCTGCAGGTTTTCGCCTTTCTAGGAGATGGCAGAAACTCAGATGTGGTGCTTGTTCGGCGGTTCTTAAGTTTTCACTCAGAATGAAATCTCATGTTGTCCCATATGAAGTATGGAGTGCCAAAGAGCCTCTAACAGCTGAGGATGACAGAAACCTGGCTTCAACACCTCAACAATTTGATAGTCAACATTCAGATCCCGAGACATATTATGATGATTTTGTTGATAGACACTTATACTACAAAAGCACCTCTACCCAAGTAAATACTGGAACACCCTCTGATTCTATCAAATGCGTTTCCGAAACATCGGAAATCTGGACCACCGATTTAGAAAGCAGAGATTTACCCATCAACCGAGCTGACCTCGATGAAGGATTTGACATGGAAATAGAGCCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

201

Amino Acids

23.06

Weight (kDa)

6.9

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_12 PF11331 50 - 93 1.8e-17 EDR4 zinc-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
Acc36I ACCTGC 2 cut(s) 197, 211
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 2 cut(s) 20, 115
AfiI CCNNNNNNNGG 1 cut(s) 149
AflII CTTAAG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 363
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 4 cut(s) 149, 158, 338, 560
AluI AGCT 4 cut(s) 149, 158, 338, 560
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 398
ApoI RAATTY 2 cut(s) 20, 115
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BbvCI CCTCAGC 1 cut(s) 339
BccI CCATC 2 cut(s) 222, 557
BciT130I CCWGG 1 cut(s) 356
BclI TGATCA 2 cut(s) 6, 100
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 2 cut(s) 222, 597
BfmI CTRYAG 2 cut(s) 194, 204
BfrI CTTAAG 1 cut(s) 266
BfuAI ACCTGC 2 cut(s) 197, 211
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 356
BplI GAGNNNNNCTC 2 cut(s) 549, 581
BpmI CTGGAG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 34, 472
BseBI CCWGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 3 cut(s) 253, 292, 330
BseNI ACTGG 2 cut(s) 34, 472
BseRI GAGGAG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 4 cut(s) 6, 62, 100, 394
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 3 cut(s) 252, 291, 331
BspMAI CTGCAG 2 cut(s) 198, 208
BspMI ACCTGC 2 cut(s) 197, 211
BspPI GGATC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 266
BsrI ACTGG 2 cut(s) 34, 472
BssMI GATC 4 cut(s) 6, 62, 100, 394
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 91
BstAFI CTTAAG 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 239, 278, 339
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 4 cut(s) 9, 65, 103, 397
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 4 cut(s) 6, 62, 100, 394
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 155, 257
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 2 cut(s) 194, 204
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 27, 96
BveI ACCTGC 2 cut(s) 197, 211
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 519
CviAII CATG 2 cut(s) 293, 583
CviJI RGCY 9 cut(s) 59, 95, 149, 158, 328, 338, 359, 560, 595
CviKI_1 RGCY 9 cut(s) 59, 95, 149, 158, 328, 338, 359, 560, 595
DdeI CTNAG 3 cut(s) 239, 278, 339
DpnI GATC 4 cut(s) 8, 64, 102, 396
DpnII GATC 4 cut(s) 6, 62, 100, 394
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 2 cut(s) 296, 586
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 292, 582
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 2 cut(s) 6, 100
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 160
FspBI CTAG 2 cut(s) 222, 597
GsuI CTGGAG 1 cut(s) 171
Hin1II CATG 2 cut(s) 296, 586
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HinfI GANTC 1 cut(s) 482
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 7 cut(s) 140, 242, 281, 394, 481, 502, 511
Hpy188III TCNNGA 2 cut(s) 398, 517
Hpy8I GTNNAC 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 172, 566
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 38, 196, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 257
HpyF3I CTNAG 3 cut(s) 239, 278, 339
Hsp92II CATG 2 cut(s) 296, 586
Ksp22I TGATCA 2 cut(s) 6, 100
Kzo9I GATC 4 cut(s) 6, 62, 100, 394
LmnI GCTCC 2 cut(s) 155, 163
MaeI CTAG 2 cut(s) 222, 597
MalI GATC 4 cut(s) 8, 64, 102, 396
MboI GATC 4 cut(s) 6, 62, 100, 394
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 20, 115, 374
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 7 cut(s) 146, 334, 339, 378, 460, 487, 575
MseI TTAA 2 cut(s) 126, 267
MspA1I CMGCKG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 155, 257
NdeI CATATG 1 cut(s) 304
NdeII GATC 4 cut(s) 6, 62, 100, 394
NlaIII CATG 2 cut(s) 296, 586
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 482
Ple19I CGATCG 1 cut(s) 65
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspPI GGNCC 1 cut(s) 519
PstI CTGCAG 2 cut(s) 198, 208
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 394
PvuI CGATCG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 338
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 126, 267
Sau3AI GATC 4 cut(s) 6, 62, 100, 394
Sau96I GGNCC 1 cut(s) 519
SbfI CCTGCAGG 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 356
SdaI CCTGCAGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 160
SfcI CTRYAG 2 cut(s) 194, 204
SinI GGWCC 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse8387I CCTGCAGG 1 cut(s) 208
Sse9I AATT 3 cut(s) 20, 115, 374
SsiI CCGC 1 cut(s) 260
SspMI CTAG 2 cut(s) 222, 597
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 61, 567
TasI AATT 3 cut(s) 20, 115, 374
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 2 cut(s) 126, 267
Tru9I TTAA 2 cut(s) 126, 267
TscAI CASTG 2 cut(s) 34, 96
TspDTI ATGAA 6 cut(s) 32, 99, 154, 299, 321, 585
TspRI CASTG 2 cut(s) 34, 96
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 519
XapI RAATTY 2 cut(s) 20, 115
XcmI CCANNNNNNNNNTGG 2 cut(s) 309, 464
XspI CTAG 2 cut(s) 222, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.