Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001852.1

Orthogroup ID

OG0000408

Physical Location & Seq

Genomic Coordinates Reverse (-)

92630 .. 93495

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001852.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggcagtggagttacttggaggagcagtatttagtctgctgtgtgatggggttaagccagcgattggaaagactgggactttcaaatacctcctcagagatatcaaatccacgctagagtctttgaacaaactacactccacagccatccaacaaattggagagtacaacctggaattgggtctcccaaatgacgaaattgaagacctcagagaacagatggagcaaggggcgaagcttgtttgcaacttgtccaattttcgcatgtggaactactgcagcatcaattgttacactgaccaactggccttgattaatgcatggaatggagcttgtcagaatattggaggaagtatggtgctgttcccaagaggcacatttgtggtggctccggtggttcttccaggtccatgtaagggaccaatggagttggaaattcagggtacttctaaggaggtcaaagatttcattgatattgaccattggatcaccataaaatacgttcagcgcttgaggattattagtggtggaaccctagaatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

5.21

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11090 FvH4_5g11120 FvH4_5g11130 FvH4_5g11160 FvH4_5g11200 FvH4_5g11201 FvH4_5g11220 FvH4_5g11230 FvH4_5g11231 FvH4_5g11250
malus_domestica	MD02G1021700.v1.1 MD02G1022000.v1.1 MD06G1115400.v1.1 MD06G1115800.v1.1 MD06G1116100.v1.1 MD15G1278700.v1.1
prunus_persica	Prupe.5G127700_v2.0.a1 Prupe.5G127800_v2.0.a1 Prupe.5G127900_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1 Prupe.7G138400_v2.0.a1
pyrus_communis	pycom06g10800 pycom06g10840 pycom14g10990 pycom15g24080 pycom15g24110 pycom15g24120
rosa_chinensis	RchiOBHm_Chr2g0104561 RchiOBHm_Chr7g0186621 RchiOBHm_Chr7g0186631 RchiOBHm_Chr7g0186691
rosa_laevigata	RLG00000002334 RLG00000004825 RLG00000004827 RLG00000004828 RLG00000014202
rosa_multiflora	Rmu_sc0000645.1_g000001 Rmu_sc0000645.1_g000011 Rmu_sc0000645.1_g000016 Rmu_sc0001301.1_g000003 Rmu_sc0001852.1_g000020 Rmu_sc0002316.1_g000047 Rmu_sc0003419.1_g000031 Rmu_sc0003825.1_g000016 Rmu_sc0005784.1_g000004 Rmu_sc0005784.1_g000013 Rmu_sc0005784.1_g000014 Rmu_sc0007722.1_g000010 Rmu_sc0007722.1_g000018
rosa_roxburghii	Rroxscaffold_3G00240400 Rroxscaffold_3G00267900 Rroxscaffold_3G00267910 Rroxscaffold_3G00267940 Rroxscaffold_3G00267990 Rroxscaffold_3G00268000
rosa_rugosa	Rorug02G0116000 Rorug02G0120800 Rorug02G0120900 Rorug06G0475500 Rorug06G0475600 Rorug06G0475600 Rorug06G0475700
rosa_samantha	Rh2AG164300 Rh2AG171300 Rh2AG173100 Rh2BG171500 Rh2BG178600 Rh2BG180800 Rh2DG169600 Rh2DG177300 Rh2DG179300 Rh7AG065000 Rh7AG065200 Rh7AG065300 Rh7AG321500 Rh7AG321700 Rh7AG322300 Rh7AG322400 Rh7BG081200 Rh7BG081300 Rh7BG313300 Rh7CG082400 Rh7CG082600 Rh7CG338000 Rh7CG338200 Rh7CG339000 Rh7CG339100 Rh7DG083400 Rh7DG083500 Rh7DG083700 Rh7DG319500 Rh7DG319600
rosa_wichuraiana	Rw0G013250 Rw7G006930 Rw7G006940 Rw7G007150 Rw7G007180 Rw7G026920 Rw7G027300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	435
AfaI	GTAC	2 cut(s)	167, 445
AfeI	AGCGCT	1 cut(s)	509
AfiI	CCNNNNNNNGG	3 cut(s)	65, 178, 416
AgsI	TTSAA	3 cut(s)	85, 127, 203
AjnI	CCWGG	2 cut(s)	171, 403
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	2 cut(s)	238, 332
AluI	AGCT	2 cut(s)	238, 332
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	494
Aor51HI	AGCGCT	1 cut(s)	509
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	435
AseI	ATTAAT	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	407, 419
AsuHPI	GGTGA	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	407, 419
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	3 cut(s)	41, 155, 214
BciT130I	CCWGG	2 cut(s)	173, 405
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	3 cut(s)	116, 536, 544
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	173, 405
Bme18I	GGWCC	2 cut(s)	407, 419
BmgT120I	GGNCC	2 cut(s)	407, 419
BmiI	GGNNCC	3 cut(s)	390, 420, 532
BmrFI	CCNGG	2 cut(s)	173, 405
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	532
BsaI	GGTCTC	1 cut(s)	188
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 178, 416
Bse1I	ACTGG	2 cut(s)	79, 309
BseBI	CCWGG	2 cut(s)	173, 405
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	65, 178, 416
BseMII	CTCAG	2 cut(s)	109, 223
BseNI	ACTGG	2 cut(s)	79, 309
BseRI	GAGGAG	2 cut(s)	36, 83
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	91, 432
BslI	CCNNNNNNNGG	3 cut(s)	65, 178, 416
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	91, 432
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	486
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	2 cut(s)	108, 222
BspLI	GGNNCC	3 cut(s)	390, 420, 532
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	79, 309
BssMI	GATC	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	173, 405
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	95, 209, 450
BstF5I	GGATG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	486
BstNI	CCWGG	2 cut(s)	173, 405
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	171, 403
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 294
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	407, 419
Csp6I	GTAC	2 cut(s)	166, 444
CviAII	CATG	3 cut(s)	265, 321, 411
CviJI	RGCY	6 cut(s)	58, 146, 238, 308, 332, 389
CviKI_1	RGCY	6 cut(s)	58, 146, 238, 308, 332, 389
CviQI	GTAC	2 cut(s)	166, 444
DdeI	CTNAG	3 cut(s)	95, 209, 450
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	407, 419
Eco47III	AGCGCT	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	171, 403
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	3 cut(s)	268, 324, 414
FaiI	YATR	5 cut(s)	266, 322, 356, 412, 494
FaqI	GGGAC	2 cut(s)	91, 432
FatI	CATG	3 cut(s)	264, 320, 410
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	3 cut(s)	116, 536, 544
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	3 cut(s)	268, 324, 414
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	119, 539
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	98, 212, 339
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	3 cut(s)	246, 279, 320
HpyF3I	CTNAG	3 cut(s)	95, 209, 450
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	268, 324, 414
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	4 cut(s)	23, 223, 329, 394
LpnPI	CCDG	9 cut(s)	60, 72, 158, 185, 290, 390, 405, 417, 425
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	3 cut(s)	116, 536, 544
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	12, 290
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	2 cut(s)	215, 392
MfeI	CAATTG	1 cut(s)	286
MluCI	AATT	6 cut(s)	156, 176, 198, 256, 286, 435
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	175, 411
MnlI	CCTC	8 cut(s)	14, 101, 104, 218, 341, 365, 448, 507
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	2 cut(s)	54, 315
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	173, 405
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	2 cut(s)	173, 405
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	3 cut(s)	268, 324, 414
NlaIV	GGNNCC	3 cut(s)	390, 420, 532
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	268
OliI	CACNNNNGTG	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	171, 403
PspGI	CCWGG	2 cut(s)	171, 403
PspN4I	GGNNCC	3 cut(s)	390, 420, 532
PspPI	GGNCC	2 cut(s)	407, 419
PstI	CTGCAG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	167, 445
RsaNI	GTAC	2 cut(s)	166, 444
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	54, 315
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	2 cut(s)	407, 419
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	173, 405
SetI	ASST	8 cut(s)	93, 174, 210, 240, 334, 409, 459, 504
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	2 cut(s)	407, 419
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	6 cut(s)	156, 176, 198, 256, 286, 435
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	3 cut(s)	116, 536, 544
StyD4I	CCNGG	2 cut(s)	171, 403
TaiI	ACGT	1 cut(s)	504
TasI	AATT	6 cut(s)	156, 176, 198, 256, 286, 435
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	54, 315
Tru9I	TTAA	2 cut(s)	54, 315
TscAI	CASTG	2 cut(s)	12, 301
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	12, 301
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	407, 419
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	1 cut(s)	435
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	3 cut(s)	116, 536, 544
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.