Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

30734994 .. 30735514

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1241800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTAGAGTATGCATACACTCTGAGGGTGGATGAGAAAAGCGATGTATATAGCTTCGGGGTGGTTCTGTTAGAGCTTCTGACGGGGCGGCGGCCGGTAGGCGAGTTTGGAGAAGGCGTGGACATAGTGCAATGGTCGAAGAAAGCAACGAATTGTCGGAAAGAGGATGTTGCAAATATTGTTGATCATAGGCTTACTATATATATGCCCAAAGATGAAGCAATGCACATGTTCTTCATTGCAATGCTTTGCATCCAAGAAAACAGCGTTGAGAGGCCGATGATGAGAGAAGTTGTTCAAATGCTATCGGAGTTTCCTCGTCACTCTCTAGAATCCTTTCGGTCCTCTTCGTCTTTAGCCAATTCCCAGAAATCGAAGAACATCGAAAAAGACGGAAAATGTCCCAAGTTCAAACAAGATATTTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

6.31

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	6 - 102	5.3e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 91
AcoI	YGGCCR	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	299, 412
AluBI	AGCT	2 cut(s)	54, 76
AluI	AGCT	2 cut(s)	54, 76
AoxI	GGCC	2 cut(s)	92, 275
Asp700I	GAANNNNTTC	2 cut(s)	294, 336
AspS9I	GGNCC	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	89, 92
BlsI	GCNGC	2 cut(s)	90, 93
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	342
BmsI	GCATC	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse118I	RCCGGY	1 cut(s)	94
Bse3DI	GCAATG	4 cut(s)	137, 228, 237, 249
BseGI	GGATG	3 cut(s)	37, 172, 252
BseMI	GCAATG	4 cut(s)	137, 228, 237, 249
BseMII	CTCAG	1 cut(s)	14
BseX3I	CGGCCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	94, 277
BsiEI	CGRYCG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	94, 277
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	88, 91
BspANI	GGCC	2 cut(s)	94, 277
BspCNI	CTCAG	1 cut(s)	15
BsrDI	GCAATG	4 cut(s)	137, 228, 237, 249
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	37, 172, 252
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	94, 277
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	37, 172, 252
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	342
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	54, 76, 94, 193, 277, 359
CviKI_1	RGCY	6 cut(s)	54, 76, 94, 193, 277, 359
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	92
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EclXI	CGGCCG	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	342
Eco52I	CGGCCG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	16
FaeI	CATG	1 cut(s)	232
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	89, 92
FokI	GGATG	3 cut(s)	44, 179, 239
Fsp4HI	GCNGC	2 cut(s)	89, 92
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	2 cut(s)	89, 92
HaeIII	GGCC	2 cut(s)	94, 277
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	24, 81, 159, 310
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	6 cut(s)	14, 130, 173, 226, 242, 252
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	2 cut(s)	108, 380
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	4 cut(s)	151, 226, 339, 388
MluCI	AATT	2 cut(s)	151, 361
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	18, 157, 267, 327, 355
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	2 cut(s)	294, 336
MseI	TTAA	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	232
PciI	ACATGT	1 cut(s)	228
PdmI	GAANNNNTTC	2 cut(s)	294, 336
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	90, 93
PscI	ACATGT	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	2 cut(s)	89, 92
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	342
SetI	ASST	2 cut(s)	56, 78
SfaNI	GCATC	1 cut(s)	261
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	151, 361
SsiI	CCGC	2 cut(s)	88, 91
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	329
TaqI	TCGA	3 cut(s)	137, 374, 384
TaqII	GACCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	151, 361
TauI	GCSGC	2 cut(s)	91, 94
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	226, 231
TspGWI	ACGGA	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	1 cut(s)	232
XmnI	GAANNNNTTC	2 cut(s)	294, 336
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.