Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

33299082 .. 33299423

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG277200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAAGTGGATGAGAAAATTGATGTGTATAGCTTTGGTGTGGTTCTGCTGGAACTAATAACAGGGAGGAAACCAGTGGTTGAACTAGTGGAAGAAGTTATGAACATAGTAAGTTGGGTAAGGAAAACCACATCAGAAATCCCTCAGTCATCCACTACATCATCTGTACTCACAGTAGTGGACTCCAGGCTCAGTGGGTTCCCACTGGCAAGTGTCGAGCATGTGTTCAAGATAGCAATGATGTGCGTTGACAATCACAGCCCTGCAAGACCTACGATGAGGGAAGTCGTCTACTTCCTCACTAATCCTCCTTGTTCAGCTCCAGGCATGACAAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.48

Weight (kDa)

5.61

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 98	2.4e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	83, 229
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	185, 322
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	33, 320
AluI	AGCT	2 cut(s)	33, 320
BciT130I	CCWGG	2 cut(s)	187, 324
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	187, 324
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	2 cut(s)	187, 324
BpmI	CTGGAG	2 cut(s)	169, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bse1I	ACTGG	2 cut(s)	74, 210
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	187, 324
BseGI	GGATG	2 cut(s)	16, 149
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	158, 205
BseNI	ACTGG	2 cut(s)	74, 210
BspCNI	CTCAG	2 cut(s)	157, 204
BspLI	GGNNCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	74, 210
Bst2UI	CCWGG	2 cut(s)	187, 324
Bst4CI	ACNGT	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	144, 191, 339
BstF5I	GGATG	2 cut(s)	16, 149
BstNI	CCWGG	2 cut(s)	187, 324
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	185, 322
BtsCI	GGATG	2 cut(s)	16, 149
BtsIMutI	CAGTG	3 cut(s)	81, 199, 203
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	2 cut(s)	221, 328
CviJI	RGCY	4 cut(s)	33, 190, 261, 320
CviKI_1	RGCY	4 cut(s)	33, 190, 261, 320
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	3 cut(s)	144, 191, 339
EcoRII	CCWGG	2 cut(s)	185, 322
FaeI	CATG	2 cut(s)	224, 331
FaiI	YATR	5 cut(s)	30, 101, 107, 222, 329
FatI	CATG	2 cut(s)	220, 327
FblI	GTMKAC	1 cut(s)	291
FokI	GGATG	2 cut(s)	23, 136
FspBI	CTAG	1 cut(s)	86
GsuI	CTGGAG	2 cut(s)	169, 306
Hin1II	CATG	2 cut(s)	224, 331
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	181, 250, 292
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	3 cut(s)	181, 250, 292
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	144, 191, 339
Hsp92II	CATG	2 cut(s)	224, 331
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	9 cut(s)	35, 48, 87, 172, 191, 199, 276, 309, 336
MaeI	CTAG	1 cut(s)	86
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	60, 153, 273, 308, 318
MslI	CAYNNNNRTG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	187, 324
MvaI	CCWGG	2 cut(s)	187, 324
NlaIII	CATG	2 cut(s)	224, 331
NlaIV	GGNNCC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	224
OliI	CACNNNNGTG	1 cut(s)	176
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	185, 322
PspGI	CCWGG	2 cut(s)	185, 322
PspN4I	GGNNCC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	176
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	187, 324
SetI	ASST	3 cut(s)	35, 274, 322
SmiMI	CAYNNNNRTG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	1 cut(s)	18
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	185, 322
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	166
TscAI	CASTG	3 cut(s)	81, 199, 210
TspDTI	ATGAA	2 cut(s)	17, 116
TspRI	CASTG	3 cut(s)	81, 199, 210
XceI	RCATGY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.