Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

36323667 .. 36336451

Gene Structure 12785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG303300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGCTCAAGAAAGCCATGATTGGTCCCAAAGGTTCAGGGCTAGAGGACTGGGAGCCCTCTTCTCACCACTACTGCTCCTTCTTTGGAGTTTCATGTGACCAGCAATCACGAGTTGTTGCTCTCAACTTGTCCGGTTTGCCTCTGTTTGGCTCGATTCCGGTGGAGATTGGGCTTCTGAACAAGCTCGTCAACCTCACCATTGCTGAAGACAACTTGACAGGGAGTCTTCCCCTGGAGATCGCCAACCTGACTTCTTTAAAGCTCTTGAACATCTCCAACAACTTGTTCAGTGGAAGATTTCCCGGAGAAGTCACGCTCAGAATGACAGAGCTTGAGGTTCTCGACGCGTACGACAACGACTTTATTGGGAATCTTCCCCTTGAGATCGCCAGTCTTAGAAGGCTCAAACATCTACATCTTGGCGGGAACTTCTTCACTGGAGAAATTCCCGGAAATTATTCAAAGATTCAAAGCTTAGAATATTTGGCCCTCAACGCTAATTCGCTTGCCGGAAAATTTCCGGCCAGCTTGGCTCGGTTGAGGAATCTCAAGGAATTGTACGTCGGGTACTATAACAATTTCGACGGTGGAATTCCACCTGAGTTGGGATCGTTGAGGTCGCTGCAAGTTCTAGACATGGCCAGCTGTGGCCTCTCCGGCACGATACCGACGACTATGGGCTTTTTGAAGAACGTACACTCGTTGTTTTTAAAGGCTAACCATTTCAGTGGTAATATACCTCCAGAACTTTCGGGTATGGCAAGCCTGATGAGTTTGACCCTCTCTATAAATGAACTCACCGGTGAAATACCAAAGAGTTTCTCAAAGCTCAAGAACCTTACACTTCTCAAGCTGAATGATAACAACCTCTACGGCCAGATACCCAACTTCATTGGTGATCTTCCTCATCTGGAGGTGTTTAGCGTCGGGAACAACAACTTTACATTTGCTCTACCGGAGAGTCTTGGCCGGAATGAAAGACTTATGTACCTCAATGTAACCGAAACTATATATAGACTTAAAGAGAATCACTACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

346

Amino Acids

38.14

Weight (kDa)

6.08

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	107 - 189	4.4e-06	Leucine-rich repeat region
LRR_14	PF23598	198 - 285	4.9e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	347
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	4 cut(s)	522, 639, 874, 967
AcsI	RAATTY	3 cut(s)	444, 515, 591
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	5 cut(s)	350, 560, 569, 696, 989
AfiI	CCNNNNNNNGG	2 cut(s)	146, 605
AflIII	ACRYGT	1 cut(s)	345
AgeI	ACCGGT	1 cut(s)	800
AgsI	TTSAA	4 cut(s)	268, 462, 470, 688
AhdI	GACNNNNNGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	8 cut(s)	184, 262, 331, 474, 528, 645, 829, 853
AluI	AGCT	8 cut(s)	184, 262, 331, 474, 528, 645, 829, 853
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	6 cut(s)	486, 522, 639, 649, 874, 967
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	3 cut(s)	444, 515, 591
AsiGI	ACCGGT	1 cut(s)	800
Asp700I	GAANNNNTTC	2 cut(s)	431, 457
AspS9I	GGNCC	2 cut(s)	23, 487
AsuC2I	CCSGG	2 cut(s)	303, 450
AsuHPI	GGTGA	5 cut(s)	56, 187, 790, 815, 908
AvaII	GGWCC	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	971, 1004
BalI	TGGCCA	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	2 cut(s)	213, 218
BbvI	GCAGC	1 cut(s)	609
BceAI	ACGGC	1 cut(s)	889
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	2 cut(s)	303, 450
BfaI	CTAG	2 cut(s)	41, 632
BglI	GCCNNNNNGGC	2 cut(s)	530, 657
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
Bme1390I	CCNGG	3 cut(s)	233, 303, 450
Bme18I	GGWCC	1 cut(s)	23
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	23, 487
BmiI	GGNNCC	2 cut(s)	25, 54
BmrFI	CCNGG	3 cut(s)	233, 303, 450
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	2 cut(s)	213, 218
BpmI	CTGGAG	4 cut(s)	254, 459, 726, 932
BpuEI	CTTGAG	5 cut(s)	353, 401, 533, 815, 833
BpuMI	CCSGG	2 cut(s)	303, 450
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	4 cut(s)	131, 157, 800, 955
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 605
Bse118I	RCCGGY	1 cut(s)	800
Bse1I	ACTGG	3 cut(s)	53, 390, 442
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	146, 605
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	331, 591
BseNI	ACTGG	3 cut(s)	53, 390, 442
BseXI	GCAGC	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	6 cut(s)	488, 524, 641, 651, 876, 969
BshTI	ACCGGT	1 cut(s)	800
BsiWI	CGTACG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	146, 605
BsmFI	GGGAC	1 cut(s)	9
BsnI	GGCC	6 cut(s)	488, 524, 641, 651, 876, 969
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	237, 384, 608, 898
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	6 cut(s)	488, 524, 641, 651, 876, 969
BspCNI	CTCAG	2 cut(s)	330, 592
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	25, 54
BspPI	GGATC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	800
BsrI	ACTGG	3 cut(s)	53, 390, 442
BssAI	RCCGGY	1 cut(s)	800
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	4 cut(s)	237, 384, 608, 898
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	507, 526, 643, 763
BstDEI	CTNAG	4 cut(s)	317, 395, 475, 600
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	4 cut(s)	240, 387, 611, 901
BstMBI	GATC	4 cut(s)	237, 384, 608, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	494, 530, 657
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	231, 301, 448
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	609
BstV2I	GAAGAC	2 cut(s)	213, 218
BstXI	CCANNNNNNTGG	1 cut(s)	728
BsuRI	GGCC	6 cut(s)	488, 524, 641, 651, 876, 969
BtsIMutI	CAGTG	3 cut(s)	295, 435, 733
Cac8I	GCNNGC	4 cut(s)	507, 526, 643, 763
Cfr10I	RCCGGY	1 cut(s)	800
Cfr13I	GGNCC	2 cut(s)	23, 487
CseI	GACGC	2 cut(s)	353, 913
Csp6I	GTAC	5 cut(s)	349, 559, 568, 695, 988
CspAI	ACCGGT	1 cut(s)	800
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	3 cut(s)	16, 93, 637
CviQI	GTAC	5 cut(s)	349, 559, 568, 695, 988
DdeI	CTNAG	4 cut(s)	317, 395, 475, 600
DpnI	GATC	4 cut(s)	239, 386, 610, 900
DpnII	GATC	4 cut(s)	237, 384, 608, 898
DraI	TTTAAA	2 cut(s)	258, 711
DriI	GACNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	4 cut(s)	522, 639, 874, 967
Eam1104I	CTCTTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	3 cut(s)	19, 96, 640
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	3 cut(s)	15, 92, 636
FauI	CCCGC	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	623
FspBI	CTAG	2 cut(s)	41, 632
GluI	GCNGC	1 cut(s)	623
GsuI	CTGGAG	4 cut(s)	254, 459, 726, 932
HaeIII	GGCC	6 cut(s)	488, 524, 641, 651, 876, 969
HgaI	GACGC	2 cut(s)	353, 913
Hin1II	CATG	3 cut(s)	19, 96, 640
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	472
HinfI	GANTC	7 cut(s)	154, 223, 370, 466, 544, 961, 1027
HphI	GGTGA	5 cut(s)	56, 187, 790, 815, 908
Hpy166II	GTNNAC	2 cut(s)	190, 697
Hpy188I	TCNGA	2 cut(s)	177, 320
Hpy188III	TCNNGA	9 cut(s)	7, 108, 265, 341, 632, 743, 832, 911, 928
Hpy8I	GTNNAC	2 cut(s)	190, 697
Hpy99I	CGWCG	5 cut(s)	347, 566, 587, 673, 929
HpyAV	CCTTC	2 cut(s)	88, 393
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	2 cut(s)	561, 693
HpyCH4V	TGCA	1 cut(s)	625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	494, 530, 657
HpyF3I	CTNAG	4 cut(s)	317, 395, 475, 600
HpySE526I	ACGT	2 cut(s)	561, 693
Hsp92II	CATG	3 cut(s)	19, 96, 640
Kzo9I	GATC	4 cut(s)	237, 384, 608, 898
LmnI	GCTCC	2 cut(s)	52, 80
Lsp1109I	GCAGC	1 cut(s)	609
MaeI	CTAG	2 cut(s)	41, 632
MaeII	ACGT	2 cut(s)	561, 693
MaeIII	GTNAC	3 cut(s)	95, 310, 997
MalI	GATC	4 cut(s)	239, 386, 610, 900
MboI	GATC	4 cut(s)	237, 384, 608, 898
MboII	GAAGA	8 cut(s)	51, 218, 218, 306, 365, 424, 700, 893
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	7 cut(s)	444, 454, 499, 515, 554, 577, 591
MluI	ACGCGT	1 cut(s)	345
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	2 cut(s)	232, 970
MmeI	TCCRAC	1 cut(s)	300
Mox20I	TGGCCA	1 cut(s)	641
MroXI	GAANNNNTTC	2 cut(s)	431, 457
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	4 cut(s)	257, 710, 1020, 1039
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	645
MspR9I	CCNGG	3 cut(s)	233, 303, 450
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	494, 530, 657
NciI	CCSGG	2 cut(s)	303, 450
NdeII	GATC	4 cut(s)	237, 384, 608, 898
NlaIII	CATG	3 cut(s)	19, 96, 640
NlaIV	GGNNCC	2 cut(s)	25, 54
NmuCI	GTSAC	2 cut(s)	95, 310
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 668
PdmI	GAANNNNTTC	2 cut(s)	431, 457
PfeI	GAWTC	5 cut(s)	154, 370, 466, 544, 1027
Pfl23II	CGTACG	1 cut(s)	348
PfoI	TCCNGGA	2 cut(s)	301, 448
PinAI	ACCGGT	1 cut(s)	800
PkrI	GCNGC	1 cut(s)	624
PleI	GAGTC	2 cut(s)	231, 969
PpsI	GAGTC	2 cut(s)	231, 969
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspLI	CGTACG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	25, 54
PspPI	GGNCC	2 cut(s)	23, 487
PvuII	CAGCTG	1 cut(s)	645
RsaI	GTAC	5 cut(s)	350, 560, 569, 696, 989
RsaNI	GTAC	5 cut(s)	349, 559, 568, 695, 988
RseI	CAYNNNNRTG	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	257, 710, 1020, 1039
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	4 cut(s)	237, 384, 608, 898
Sau96I	GGNCC	2 cut(s)	23, 487
SchI	GAGTC	2 cut(s)	232, 970
ScrFI	CCNGG	3 cut(s)	233, 303, 450
SduI	GDGCHC	1 cut(s)	57
SgrAI	CRCCGGYG	1 cut(s)	800
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	6 cut(s)	5, 332, 380, 548, 830, 848
SmoI	CTYRAG	6 cut(s)	5, 332, 380, 548, 830, 848
Sse9I	AATT	7 cut(s)	444, 454, 499, 515, 554, 577, 591
SsiI	CCGC	1 cut(s)	423
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	2 cut(s)	41, 632
StyD4I	CCNGG	3 cut(s)	231, 301, 448
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	2 cut(s)	564, 696
TaqI	TCGA	3 cut(s)	152, 342, 582
TasI	AATT	7 cut(s)	444, 454, 499, 515, 554, 577, 591
TfiI	GAWTC	5 cut(s)	154, 370, 466, 544, 1027
Tru1I	TTAA	4 cut(s)	257, 710, 1020, 1039
Tru9I	TTAA	4 cut(s)	257, 710, 1020, 1039
TscAI	CASTG	3 cut(s)	295, 442, 733
TseFI	GTSAC	2 cut(s)	95, 310
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	2 cut(s)	95, 310
TspDTI	ATGAA	4 cut(s)	81, 807, 880, 990
TspRI	CASTG	3 cut(s)	295, 442, 733
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	3 cut(s)	444, 515, 591
XbaI	TCTAGA	1 cut(s)	631
XmnI	GAANNNNTTC	2 cut(s)	431, 457
XspI	CTAG	2 cut(s)	41, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.