Rh2AG278100

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
33388114 .. 33390844
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG278100.1

Sequence Viewer

Length: 1041 bp
ATGATTGGTCCCAAAGGTTCAGGGCTGGAGGACTGGGAGCCCTCTTCTCACCACTACGGCTCCTTCTCTGGAGTTTCATGTGACCAGCAATCACGAGTTGTGGCTCTTAACGTGTCCAGTTTGCTTCTGTCTGGCTCGATTCCAGCAGAGATTGGGCTTCTGAACAAGCTCATCAACCTCACCATTGCTGACACCAACTTGACCGGGAGTCTTCCCCTCGAGATGGCCAATCTGACTTCATTAAAGCTTTTGAACATCTCCAACAGCGACCTCACTGGGAGGTTTCCTGGAGAAATCATACTCCGAATGACGGAGCTTGAGGTTCTCGACGCCTACAACAACGACTTTTTAGGGACTCTTCCGCTTGAGATTGCCAGTCTCAAAAAGCTCAGACATCTACATCTTGGCGATAGCTTCTTCACTGGAGAAATTCCCCGAAATTATTCAAATATTCATAGCTTAGAATATTTGGCCCTCAACGATAACTTGCTTACCGGAAAAGTTCCGGCCAGCTTGGCTCGGTTGAAGAATCTCAAGAAACTGTACGTCGGGAATGTTAGAATCTCAATAAACTATAACAAGTTCGACGGTGGAATTCCACCTGAGTTGGGAATGTTGGAGTCGCTGCAAGTGCTTGACATGGTCGGCTGTAAGCTCTCCGGCACGATTCCGACTACTCTGGGCTTTTTGAAGAACTTACACACGTTGAATATATCGAATAACCGTTTGAGTGGTAATATACCTCCAGAACATTCGGATTTGGTAAACCTGATGAGTTTGGACCTCTCTGTTAACAAACTCACCGGTGAAATACCAGAGAGTTTCTCAAAGCTCAAGAACCTTAAACTTCTACAACTAGTTGGGAACAACCTCTACGGCCAGATACCCATCTTCATTGGTGATCTTCCTCATCTGGAGGCGTTTGACGTTGGGGGCAACAACTTTACATTTGCTCTACCGGAGAGTCTTGGCCTGAATGAAAGACTTACGTCCCTCAAGGTATCCGAAAGACAACTCGCAGAGTCTGTTAATCCTGCATGA

Protein Analysis

346

Amino Acids

37.67

Weight (kDa)

5.64

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 46 - 135 1.1e-06 Leucine-rich repeat region
LRR_14 PF23598 124 - 241 1.3e-10 Leucine-rich repeat region
LRR_14 PF23598 200 - 286 9.2e-07 Leucine-rich repeat region
LRR_8 PF13855 232 - 291 3.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 362
AcoI YGGCCR 3 cut(s) 225, 507, 877
AcsI RAATTY 2 cut(s) 429, 594
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 3 cut(s) 223, 310, 608
AflIII ACRYGT 2 cut(s) 111, 702
AgeI ACCGGT 1 cut(s) 803
AgsI TTSAA 5 cut(s) 253, 447, 526, 691, 709
AhdI GACNNNNNGTC 1 cut(s) 207
AhlI ACTAGT 1 cut(s) 856
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 9 cut(s) 169, 247, 316, 388, 414, 459, 513, 655, 832
AluI AGCT 9 cut(s) 169, 247, 316, 388, 414, 459, 513, 655, 832
Alw26I GTCTC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 5 cut(s) 225, 471, 507, 877, 970
ApeKI GCWGC 1 cut(s) 625
ApoI RAATTY 2 cut(s) 429, 594
AsiGI ACCGGT 1 cut(s) 803
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 3 cut(s) 8, 472, 781
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 5 cut(s) 41, 172, 793, 818, 911
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 2 cut(s) 8, 781
BalI TGGCCA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 612
BccI CCATC 2 cut(s) 217, 896
BceAI ACGGC 2 cut(s) 73, 892
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 1012
BcnI CCSGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 383
BcuI ACTAGT 1 cut(s) 856
BfaI CTAG 1 cut(s) 857
BfuI GTATCC 1 cut(s) 1012
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 627
Bme1390I CCNGG 2 cut(s) 205, 288
Bme18I GGWCC 2 cut(s) 8, 781
BmeRI GACNNNNNGTC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 8, 472, 781
BmiI GGNNCC 3 cut(s) 10, 39, 61
BmrFI CCNGG 2 cut(s) 205, 288
BmrI ACTGGG 2 cut(s) 43, 285
BmuI ACTGGG 2 cut(s) 43, 285
BoxI GACNNNNGTC 1 cut(s) 988
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 6 cut(s) 47, 90, 309, 444, 729, 935
BpuEI CTTGAG 5 cut(s) 338, 386, 518, 818, 980
BpuMI CCSGG 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 887
BsaHI GRCGYC 1 cut(s) 330
BsaWI WCCGGW 3 cut(s) 494, 803, 958
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 310, 608
Bse118I RCCGGY 1 cut(s) 803
Bse1I ACTGG 5 cut(s) 38, 117, 280, 375, 427
Bse3DI GCAATG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 887
BseBI CCWGG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 887
BseLI CCNNNNNNNGG 3 cut(s) 223, 310, 608
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 403, 594
BseNI ACTGG 5 cut(s) 38, 117, 280, 375, 427
BseXI GCAGC 1 cut(s) 612
BshFI GGCC 5 cut(s) 227, 473, 509, 879, 972
BshTI ACCGGT 1 cut(s) 803
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 6 cut(s) 204, 495, 506, 660, 804, 959
BslFI GGGAC 2 cut(s) 367, 976
BslI CCNNNNNNNGG 3 cut(s) 223, 310, 608
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 2 cut(s) 367, 976
BsnI GGCC 5 cut(s) 227, 473, 509, 879, 972
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 901
BspACI CCGC 1 cut(s) 362
BspANI GGCC 5 cut(s) 227, 473, 509, 879, 972
BspCNI CTCAG 2 cut(s) 402, 595
BspLI GGNNCC 3 cut(s) 10, 39, 61
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 803
BsrI ACTGG 5 cut(s) 38, 117, 280, 375, 427
BssAI RCCGGY 1 cut(s) 803
BssMI GATC 1 cut(s) 901
BssNI GRCGYC 1 cut(s) 330
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 3 cut(s) 543, 590, 725
Bst6I CTCTTC 2 cut(s) 49, 363
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 3 cut(s) 389, 460, 603
BstKTI GATC 1 cut(s) 904
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 901
BstMWI GCNNNNNNNGC 2 cut(s) 515, 631
BstNI CCWGG 1 cut(s) 288
BstPAI GACNNNNGTC 1 cut(s) 988
BstSCI CCNGG 2 cut(s) 203, 286
BstV1I GCAGC 1 cut(s) 612
BstV2I GAAGAC 1 cut(s) 203
BsuI GTATCC 1 cut(s) 1012
BsuRI GGCC 5 cut(s) 227, 473, 509, 879, 972
BtsIMutI CAGTG 2 cut(s) 273, 420
Cac8I GCNNGC 1 cut(s) 511
CaiI CAGNNNCTG 1 cut(s) 1025
Cfr10I RCCGGY 1 cut(s) 803
Cfr13I GGNCC 3 cut(s) 8, 472, 781
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 544
CspAI ACCGGT 1 cut(s) 803
CspCI CAANNNNNGTGG 2 cut(s) 588, 623
CviAII CATG 3 cut(s) 78, 640, 1038
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 3 cut(s) 389, 460, 603
DpnI GATC 1 cut(s) 903
DpnII GATC 1 cut(s) 901
DriI GACNNNNNGTC 1 cut(s) 207
EaeI YGGCCR 3 cut(s) 225, 507, 877
Eam1104I CTCTTC 2 cut(s) 49, 363
Eam1105I GACNNNNNGTC 1 cut(s) 207
EarI CTCTTC 2 cut(s) 49, 363
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 8, 781
Eco88I CYCGRG 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 594
EcoRII CCWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 3 cut(s) 81, 643, 1041
FaiI YATR 8 cut(s) 79, 299, 456, 576, 641, 713, 740, 1039
FaqI GGGAC 2 cut(s) 367, 976
FatI CATG 3 cut(s) 77, 639, 1037
Fnu4HI GCNGC 1 cut(s) 626
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 1 cut(s) 857
GluI GCNGC 1 cut(s) 626
GsuI CTGGAG 6 cut(s) 47, 90, 309, 444, 729, 935
HaeIII GGCC 5 cut(s) 227, 473, 509, 879, 972
HapII CCGG 6 cut(s) 204, 495, 506, 660, 804, 959
HgaI GACGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 3 cut(s) 81, 643, 1041
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 9 cut(s) 139, 208, 355, 529, 561, 620, 667, 964, 1022
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 6 cut(s) 204, 495, 506, 660, 804, 959
HphI GGTGA 5 cut(s) 41, 172, 793, 818, 911
Hpy166II GTNNAC 2 cut(s) 766, 793
Hpy188I TCNGA 7 cut(s) 162, 234, 305, 392, 672, 757, 1006
Hpy188III TCNNGA 9 cut(s) 69, 93, 220, 326, 535, 550, 746, 835, 914
Hpy8I GTNNAC 2 cut(s) 766, 793
Hpy99I CGWCG 3 cut(s) 332, 551, 590
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 543, 590, 725
HpyCH4IV ACGT 5 cut(s) 111, 546, 704, 927, 989
HpyCH4V TGCA 2 cut(s) 628, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 631
HpyF3I CTNAG 3 cut(s) 389, 460, 603
HpySE526I ACGT 5 cut(s) 111, 546, 704, 927, 989
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 81, 643, 1041
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 1 cut(s) 901
LmnI GCTCC 3 cut(s) 37, 65, 313
Lsp1109I GCAGC 1 cut(s) 612
MaeI CTAG 1 cut(s) 857
MaeII ACGT 5 cut(s) 111, 546, 704, 927, 989
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 903
MboI GATC 1 cut(s) 901
MboII GAAGA 8 cut(s) 36, 203, 350, 409, 538, 703, 883, 896
MhlI GDGCHC 1 cut(s) 42
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 3 cut(s) 429, 439, 594
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 5 cut(s) 217, 349, 629, 973, 1031
MmeI TCCRAC 3 cut(s) 285, 597, 695
Mox20I TGGCCA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 227
MseI TTAA 5 cut(s) 108, 242, 792, 843, 1029
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 6 cut(s) 204, 495, 506, 660, 804, 959
MspR9I CCNGG 2 cut(s) 205, 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 515, 631
NciI CCSGG 1 cut(s) 205
NdeII GATC 1 cut(s) 901
NlaIII CATG 3 cut(s) 81, 643, 1041
NlaIV GGNNCC 3 cut(s) 10, 39, 61
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 4 cut(s) 139, 529, 561, 667
PflFI GACNNNGTC 1 cut(s) 641
PfoI TCCNGGA 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 803
PkrI GCNGC 1 cut(s) 627
PleI GAGTC 5 cut(s) 216, 349, 628, 972, 1030
PpsI GAGTC 5 cut(s) 216, 349, 628, 972, 1030
PshAI GACNNNNGTC 1 cut(s) 988
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 10, 39, 61
PspPI GGNCC 3 cut(s) 8, 472, 781
PsrI GAACNNNNNNTAC 2 cut(s) 857, 889
PstNI CAGNNNCTG 1 cut(s) 1025
PsyI GACNNNGTC 1 cut(s) 641
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SaqAI TTAA 5 cut(s) 108, 242, 792, 843, 1029
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 1 cut(s) 901
Sau96I GGNCC 3 cut(s) 8, 472, 781
SchI GAGTC 5 cut(s) 217, 349, 629, 973, 1031
ScrFI CCNGG 2 cut(s) 205, 288
SduI GDGCHC 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 218
SgrAI CRCCGGYG 1 cut(s) 803
SinI GGWCC 2 cut(s) 8, 781
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 6 cut(s) 218, 317, 365, 533, 833, 995
SmoI CTYRAG 6 cut(s) 218, 317, 365, 533, 833, 995
SpeI ACTAGT 1 cut(s) 856
Sse9I AATT 3 cut(s) 429, 439, 594
SsiI CCGC 1 cut(s) 362
SspI AATATT 2 cut(s) 451, 467
SspMI CTAG 1 cut(s) 857
StyD4I CCNGG 2 cut(s) 203, 286
TaaI ACNGT 3 cut(s) 543, 590, 725
TaiI ACGT 5 cut(s) 114, 549, 707, 930, 992
TaqI TCGA 5 cut(s) 137, 219, 327, 585, 716
TasI AATT 3 cut(s) 429, 439, 594
TfiI GAWTC 4 cut(s) 139, 529, 561, 667
Tru1I TTAA 5 cut(s) 108, 242, 792, 843, 1029
Tru9I TTAA 5 cut(s) 108, 242, 792, 843, 1029
TscAI CASTG 2 cut(s) 280, 427
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 625
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 66, 228, 443, 883, 993
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 2 cut(s) 280, 427
Tth111I GACNNNGTC 1 cut(s) 641
VpaK11BI GGWCC 2 cut(s) 8, 781
XapI RAATTY 2 cut(s) 429, 594
XhoI CTCGAG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.