RLG00000018565
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
31999084 .. 32000280
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018565

Sequence Viewer

Length: 1197 bp
ATGATCGGCCCCAAAGGTTCAGGGCTAGAGAACTGGGATCCCTCTTCTCATTACGACCGCACCTTCTCTGGAGTTTCATGTGACCACCAATCACGAGTTGTTGCTCTCAACGTGTCCAGTTTGCCTCTGTTTGGCTCGCTTCCGGCGGAGATTGGGCTTCTGAACAAGCTCGTCAACCTCAACATTGCCGACAACAACTTCACAGGGAGTCTTCCCCTCGAGATGGCCAACCTGACTTGTTTAAAGCTCTTGAACATCTCCAACAACTTGTTCAGTGGAAGATTTCCCGGAGAAGTCACGCTCAGAATGACAGAGCTTGAGGATCTCGACGCCTATAACAACAACTTCACTGGTCCACTTCCGGTAGAGCTCGCCAATCTCAAAAAGCTCAAACATCTGCATCTTGGCGGGAATTGCTTCACTGGAGAAATTCCGAATAATTATTCAGAGATTCATAGCTTGGAGTATCTGGGCCTCAACGGTATCGGGCTCACCGGAAAGTTCCCTTCCAGCTTGGCTCTGTTGAAGAATCTCAAGGAATTGTACGTTGGTTACTACAATACTTATAGCGGTGGAATTCCACCTGAGTTGGGAACGATGGAGTCGTTGCAAGTGCTTGACATGGCCAGCTGTAACCTCACCGGCACGATTCCGGTCAGTCTAGGCTTTTTGGAGAACTTACGCGCGTTGTTTCTACAGATTAACCCTTTCAGTGGTTATATACCTCCACAACTTTCAGGTATGGTGAGTCTGACGTCTTTAGATCTCTCTTTAAACGAACTCACCGGAGAAATACCAGAAAGTCTCTCAGAGCTCAAGAACCTTACCCTACTCAACCTGTATAAAAACAATCTTTACGGCCCGATACCTAACTTCATCTGCGATCTTCCTCATCTGGAGGTGCTTCAACTTCGGGGGAACAACTTTACATTTGGACTACCTGAGAGTCTTGGCCGGAATGGAAGGCTCAAAGACCTCGATGTAGCCGATAACCACCTCACCGGGTTCATTCCTCGAGATTTGTGCAAAGGAGGGGGGTTGAAGACGTTGATTCTGAAGGAGAACCAGTTCTTTGGGTCAATTCCGGAGGCATTGGGTAGGTGCAAGTCGCTAGTCAACCTCAGCATGATGAAAAACACACTCAACGGGACTATTCCTGCCGGAATCTTCAGCTTACCCCTGATTGCACATGATTGA

Protein Analysis

399

Amino Acids

43.34

Weight (kDa)

5.43

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 45 - 135 3.2e-07 Leucine-rich repeat region
LRR_14 PF23598 123 - 234 2.5e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 758
AccII CGCG 2 cut(s) 684, 686
AccIII TCCGGA 1 cut(s) 1084
AciI CCGC 4 cut(s) 58, 146, 408, 570
AclWI GGATC 3 cut(s) 32, 45, 330
AcoI YGGCCR 3 cut(s) 225, 624, 952
AcsI RAATTY 2 cut(s) 429, 576
AcuI CTGAAG 2 cut(s) 1076, 1153
AcyI GRCGYC 2 cut(s) 330, 755
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 131, 223, 590, 713
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 4 cut(s) 253, 526, 908, 1042
AjuI GAANNNNNNNTTGG 4 cut(s) 254, 286, 531, 563
AloI GAACNNNNNNTCC 2 cut(s) 1052, 1084
Alw21I GWGCWC 2 cut(s) 372, 816
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 3 cut(s) 32, 45, 330
Ama87I CYCGRG 2 cut(s) 218, 1014
Aor13HI TCCGGA 1 cut(s) 1084
AoxI GGCC 6 cut(s) 7, 225, 472, 624, 859, 952
ApoI RAATTY 2 cut(s) 429, 576
Asp700I GAANNNNTTC 2 cut(s) 416, 1067
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 4 cut(s) 8, 353, 472, 860
AsuC2I CCSGG 2 cut(s) 288, 1003
AsuHPI GGTGA 5 cut(s) 484, 631, 757, 775, 991
AvaI CYCGRG 2 cut(s) 218, 1014
AvaII GGWCC 1 cut(s) 353
BalI TGGCCA 2 cut(s) 227, 626
BamHI GGATCC 1 cut(s) 37
BanII GRGCYC 3 cut(s) 372, 492, 816
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 2 cut(s) 203, 1049
Bbv12I GWGCWC 2 cut(s) 372, 816
BbvCI CCTCAGC 1 cut(s) 1121
BccI CCATC 2 cut(s) 217, 592
BceAI ACGGC 1 cut(s) 874
BcgI CGANNNNNNTGC 2 cut(s) 1005, 1039
BcnI CCSGG 2 cut(s) 288, 1003
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 3 cut(s) 26, 662, 1112
BfmI CTRYAG 1 cut(s) 695
BglII AGATCT 1 cut(s) 763
Bme1390I CCNGG 2 cut(s) 288, 1003
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 2 cut(s) 218, 1014
BmgT120I GGNCC 4 cut(s) 8, 353, 472, 860
BmiI GGNNCC 2 cut(s) 10, 39
BmrFI CCNGG 2 cut(s) 288, 1003
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 2 cut(s) 203, 1049
BpmI CTGGAG 3 cut(s) 90, 444, 917
Bpu10I CCTNAGC 1 cut(s) 1121
BpuEI CTTGAG 3 cut(s) 338, 518, 800
BpuMI CCSGG 2 cut(s) 288, 1003
BsaHI GRCGYC 2 cut(s) 330, 755
BsaWI WCCGGW 5 cut(s) 361, 494, 652, 785, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 1052, 1082
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 223, 590, 713
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 5 cut(s) 38, 117, 355, 427, 1066
Bse3DI GCAATG 1 cut(s) 183
BseAI TCCGGA 1 cut(s) 1084
BseLI CCNNNNNNNGG 4 cut(s) 131, 223, 590, 713
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 5 cut(s) 316, 576, 822, 933, 1135
BseNI ACTGG 5 cut(s) 38, 117, 355, 427, 1066
Bsh1236I CGCG 2 cut(s) 684, 686
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 2 cut(s) 372, 816
BsiHKCI CYCGRG 2 cut(s) 218, 1014
BslFI GGGAC 1 cut(s) 1162
BslI CCNNNNNNNGG 4 cut(s) 131, 223, 590, 713
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 1162
BsnI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BsoBI CYCGRG 2 cut(s) 218, 1014
Bsp1286I GDGCHC 3 cut(s) 372, 492, 816
Bsp13I TCCGGA 1 cut(s) 1084
Bsp143I GATC 5 cut(s) 3, 37, 322, 763, 883
BspACI CCGC 4 cut(s) 58, 146, 408, 570
BspANI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BspCNI CTCAG 5 cut(s) 315, 577, 821, 934, 1134
BspEI TCCGGA 1 cut(s) 1084
BspFNI CGCG 2 cut(s) 684, 686
BspLI GGNNCC 2 cut(s) 10, 39
BspPI GGATC 3 cut(s) 32, 45, 330
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 641
BsrI ACTGG 5 cut(s) 38, 117, 355, 427, 1066
BssAI RCCGGY 1 cut(s) 641
BssMI GATC 5 cut(s) 3, 37, 322, 763, 883
BssNI GRCGYC 2 cut(s) 330, 755
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 2 cut(s) 330, 755
BstC8I GCNNGC 3 cut(s) 137, 372, 628
BstDEI CTNAG 5 cut(s) 302, 585, 808, 942, 1121
BstFNI CGCG 2 cut(s) 684, 686
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 5 cut(s) 6, 40, 325, 766, 886
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 5 cut(s) 3, 37, 322, 763, 883
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 286, 1001
BstSFI CTRYAG 1 cut(s) 695
BstUI CGCG 2 cut(s) 684, 686
BstV2I GAAGAC 2 cut(s) 203, 1049
BstX2I RGATCY 3 cut(s) 37, 322, 763
BstXI CCANNNNNNTGG 1 cut(s) 1073
BstYI RGATCY 3 cut(s) 37, 322, 763
BsuRI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BtsIMutI CAGTG 4 cut(s) 280, 348, 420, 718
Cac8I GCNNGC 3 cut(s) 137, 372, 628
CfoI GCGC 1 cut(s) 686
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 4 cut(s) 8, 353, 472, 860
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 4 cut(s) 78, 622, 1126, 1190
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 5 cut(s) 302, 585, 808, 942, 1121
DpnI GATC 5 cut(s) 5, 39, 324, 765, 885
DpnII GATC 5 cut(s) 3, 37, 322, 763, 883
DraI TTTAAA 2 cut(s) 243, 774
EaeI YGGCCR 3 cut(s) 225, 624, 952
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 2 cut(s) 370, 814
Eco24I GRGCYC 3 cut(s) 372, 492, 816
Eco47I GGWCC 1 cut(s) 353
Eco53kI GAGCTC 2 cut(s) 370, 814
Eco57I CTGAAG 2 cut(s) 1076, 1153
Eco88I CYCGRG 2 cut(s) 218, 1014
EcoICRI GAGCTC 2 cut(s) 370, 814
EcoRI GAATTC 1 cut(s) 576
EcoT38I GRGCYC 3 cut(s) 372, 492, 816
FaeI CATG 4 cut(s) 81, 625, 1129, 1193
FaqI GGGAC 1 cut(s) 1162
FatI CATG 4 cut(s) 77, 621, 1125, 1189
FauI CCCGC 1 cut(s) 401
FriOI GRGCYC 3 cut(s) 372, 492, 816
FspBI CTAG 3 cut(s) 26, 662, 1112
GlaI GCGC 1 cut(s) 685
GsuI CTGGAG 3 cut(s) 90, 444, 917
HaeIII GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
HgaI GACGC 1 cut(s) 338
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 2 cut(s) 330, 755
Hin1II CATG 4 cut(s) 81, 625, 1129, 1193
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HincII GTYRAC 2 cut(s) 175, 1117
HindII GTYRAC 2 cut(s) 175, 1117
HinfI GANTC 9 cut(s) 208, 451, 529, 602, 649, 748, 946, 1051, 1164
HphI GGTGA 5 cut(s) 484, 631, 757, 775, 991
Hpy166II GTNNAC 3 cut(s) 175, 356, 1117
Hpy188I TCNGA 7 cut(s) 162, 305, 435, 448, 753, 811, 1056
Hpy188III TCNNGA 9 cut(s) 69, 93, 220, 250, 326, 817, 896, 1016, 1085
Hpy8I GTNNAC 3 cut(s) 175, 356, 1117
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 4 cut(s) 73, 516, 957, 1051
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 4 cut(s) 111, 546, 755, 1046
HpyCH4V TGCA 5 cut(s) 400, 610, 1026, 1104, 1187
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 5 cut(s) 302, 585, 808, 942, 1121
HpySE526I ACGT 4 cut(s) 111, 546, 755, 1046
Hsp92I GRCGYC 2 cut(s) 330, 755
Hsp92II CATG 4 cut(s) 81, 625, 1129, 1193
HspAI GCGC 1 cut(s) 684
Kpn2I TCCGGA 1 cut(s) 1084
Kzo9I GATC 5 cut(s) 3, 37, 322, 763, 883
LweI GCATC 1 cut(s) 409
MaeI CTAG 3 cut(s) 26, 662, 1112
MaeII ACGT 4 cut(s) 111, 546, 755, 1046
MaeIII GTNAC 4 cut(s) 80, 295, 551, 632
MalI GATC 5 cut(s) 5, 39, 324, 765, 885
MboI GATC 5 cut(s) 3, 37, 322, 763, 883
MboII GAAGA 7 cut(s) 36, 203, 291, 538, 878, 1054, 1159
MflI RGATCY 3 cut(s) 37, 322, 763
MhlI GDGCHC 3 cut(s) 372, 492, 816
MlsI TGGCCA 2 cut(s) 227, 626
MluCI AATT 6 cut(s) 412, 429, 439, 539, 576, 1080
MluNI TGGCCA 2 cut(s) 227, 626
MlyI GAGTC 4 cut(s) 217, 611, 757, 955
MmeI TCCRAC 1 cut(s) 285
Mox20I TGGCCA 2 cut(s) 227, 626
MroI TCCGGA 1 cut(s) 1084
MroXI GAANNNNTTC 2 cut(s) 416, 1067
MscI TGGCCA 2 cut(s) 227, 626
MseI TTAA 3 cut(s) 242, 702, 773
Msp20I TGGCCA 2 cut(s) 227, 626
MspA1I CMGCKG 1 cut(s) 630
MspR9I CCNGG 2 cut(s) 288, 1003
MvnI CGCG 2 cut(s) 684, 686
MwoI GCNNNNNNNGC 1 cut(s) 414
NciI CCSGG 2 cut(s) 288, 1003
NdeII GATC 5 cut(s) 3, 37, 322, 763, 883
NlaIII CATG 4 cut(s) 81, 625, 1129, 1193
NlaIV GGNNCC 2 cut(s) 10, 39
NmuCI GTSAC 2 cut(s) 80, 295
PaeR7I CTCGAG 2 cut(s) 218, 1014
PcsI WCGNNNNNNNCGW 2 cut(s) 602, 984
PdmI GAANNNNTTC 2 cut(s) 416, 1067
PfeI GAWTC 5 cut(s) 451, 529, 649, 1051, 1164
PfoI TCCNGGA 1 cut(s) 286
PleI GAGTC 4 cut(s) 216, 610, 756, 954
PpsI GAGTC 4 cut(s) 216, 610, 756, 954
Psp124BI GAGCTC 2 cut(s) 372, 816
PspN4I GGNNCC 2 cut(s) 10, 39
PspPI GGNCC 4 cut(s) 8, 353, 472, 860
PsuI RGATCY 3 cut(s) 37, 322, 763
PvuII CAGCTG 1 cut(s) 630
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SacI GAGCTC 2 cut(s) 372, 816
SaqAI TTAA 3 cut(s) 242, 702, 773
Sau3AI GATC 5 cut(s) 3, 37, 322, 763, 883
Sau96I GGNCC 4 cut(s) 8, 353, 472, 860
SchI GAGTC 4 cut(s) 217, 611, 757, 955
ScrFI CCNGG 2 cut(s) 288, 1003
SduI GDGCHC 3 cut(s) 372, 492, 816
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 695
Sfr274I CTCGAG 2 cut(s) 218, 1014
SinI GGWCC 1 cut(s) 353
SlaI CTCGAG 2 cut(s) 218, 1014
SmlI CTYRAG 5 cut(s) 218, 317, 533, 815, 1014
SmoI CTYRAG 5 cut(s) 218, 317, 533, 815, 1014
Sse9I AATT 6 cut(s) 412, 429, 439, 539, 576, 1080
SsiI CCGC 4 cut(s) 58, 146, 408, 570
SspMI CTAG 3 cut(s) 26, 662, 1112
SstI GAGCTC 2 cut(s) 372, 816
StyD4I CCNGG 2 cut(s) 286, 1001
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 4 cut(s) 114, 549, 758, 1049
TaqI TCGA 4 cut(s) 219, 327, 978, 1015
TasI AATT 6 cut(s) 412, 429, 439, 539, 576, 1080
TfiI GAWTC 5 cut(s) 451, 529, 649, 1051, 1164
Tru1I TTAA 3 cut(s) 242, 702, 773
Tru9I TTAA 3 cut(s) 242, 702, 773
TscAI CASTG 4 cut(s) 280, 355, 427, 718
TseFI GTSAC 2 cut(s) 80, 295
Tsp45I GTSAC 2 cut(s) 80, 295
TspDTI ATGAA 5 cut(s) 66, 443, 865, 997, 1145
TspRI CASTG 4 cut(s) 280, 355, 427, 718
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 2 cut(s) 429, 576
XhoI CTCGAG 2 cut(s) 218, 1014
XmnI GAANNNNTTC 2 cut(s) 416, 1067
XspI CTAG 3 cut(s) 26, 662, 1112
ZraI GACGTC 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.